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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0315100 |
| Transcript ID | LotjaGi2g1v0315100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit G-A; TAIR: AT1G70200.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1; TrEMBL-Plants: tr|V7CJM4|V7CJM4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0315100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79058569..79061474) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAATGAAACTAAAGCGATATTGTAAGTAGTGACGAAGAAGAAACGAAGAACACAGAAGCAGAAGAAGAATGCTCCGA GCAACTGCGTTTCCGCCACCGTTCAATTCGCCGCCGGTTCTCCCTCGCGCACACACGTGCCATTCTCTTGCACCCGCACG TGTCGTTCAATCTTCCCCTTCTTCCATTTCGAGGTTCGAGTTTCGAGTATTTCAACAACCCTGCGTGAAGAGCCTGCGCG CCGTGCGCGGTGGCGGGGTTGTTACAGCCGTCGCGAAGAAGAAAGGTCGCGGCGGAGTTGGTATCGTGGGAGTCGACGAA GGTTTTGACGAGGAGGAGGAGGGTGATGGTATTGAATACTATGATGATGATGATGATGATGAAGAAGTAGAGGAAGGTGA ATTTGATGATGATGGTGGTGATGATGGGGAAGAGGTGCTTCCGTTGGAGCAGATGAAGCAATGGTTTGACAAGAAGCCGA AGGGGTTTGGTGAAGGGAAAGTGTACGACACTTCTGTTGAGGATAAGCTGCTCGAGGAATTGCGCCAGAGTAGAGAAGCT CAAGCTGCTAATTTGGAGAAGCTTAAAGCCAATCCTGTCAAGCCTGCCTCCAACAAAAATGCTCAAAACCAGAAAGGTTA TCCACCATAAATCTTCTTTTTTTAGTTTTAATTTTTAAATTTGGGAATACCCTTTTAGCTGCAATGCTCAAACTTCAAAT CAGTTCTAAAATGTCAACTTTAGTGAGATTATTCTGCTGTTCATAATGGGGTTCTGTTCATGTGCTTGGTCCTGTGTTGT TTGTATCTACTGCCAATGCATGCATAGAGCATTTTTCCAGGGAGACTTGATTAATTTCACTAAGAGTTCACATTCTAGTT TGTGAAATAAGTCTTCTAGAATGATTATGAGAGAAGTGATTTTGGGAGAATTTGTTTAAATAAAAAGGACATTCTCTGCA TATGATTTCTGGTTTTCTTTCTCTTCTAAAACAGCTAATACAACTCTTGTCTGGTGATTGGAATTTGTAAAGAATTCAAA GACTTGTTAACCAATGCTATGGTCCAGTGTCATGTATTCTTGTTGTAGGTGGCTATTTTGTGTCTTGTCTTTGGGAGAAT GATGAAATTGATGTTCAAGGCTATTGATTTGTGAAGTAGTTGCTTCTTTTTTCTGCTGAGTGTACAATTTGAAATCTGAT TCTATCTGTTGCAATGGGACTTTGTAGATGCTGAAGTTGTTCCACTTGGAGGTCGAGTGCTTTTGGCGAACCTGCCGAAG AAAAAGAACATCCACAGGGACCTGAAATCAGCTATGCAAGGGGTTCCGGGCATAATAAATATAGCTCCAGCTGTTACTGG AAACAAGAAGACAAGGGATCCTATCTGCAAGGGTTTTGCTTTTGTTGATTTTAAGGACAAAAAGGATGCAGTTAGGTGTG TTAACCTCAATCCTGTATCTGCTTCCACCCTCCACCCCAAGAAAAATAATGATGGAAAATGAGGGAAGAGTAGTTTAGTC TGATACATGCAGTGCATGACAATATTGTGATGAGAAATATATCATGATGATAATTTCTTCATGAATTTTGACCACTTTAA AGATGTTTTCTTTTAGACACACCCCACCCCGTGTTTATCATAATGAAAATATGTGAAATTAGTAAAAGTTAGGTTGCTTC TCCTGGATGATCTATTCAAGCTTCCTGATGTTGTTTTACTTGGTTAAAGTTGAATAGTGCATAAATTTAACACAGGCATC TGTTGAATTTTGATTATTGTACTTTTGTTATTCAGTAAGCTGTCTGTTTGCAATGTTTAAGTTGTTTTTAGGTTCACTGT TCTAATACTACTATCTTACTAACTCCATTGTTCTTCCTCTCAGGTTTGTAGAGTTATACACTGGGCAAACTCTAACTTTT GGCAAAATTCAGAAGCAAATAAAATGCGAGGTTGTAAATGCACAGTCTTCATCTTCTTCTCCTGAGTTAAGCAAAAATCT TGGTGCTCTTCCACGTCTCATGGACTCTCCCTTTGAAGAAGATTCAAATGAGGATTCTAATATGGATGATTCTGCCGTCA GTTCCTGGGATGGGACTGATTCAAATGATTTGGATGAAGAACAGGAAAGTGATGGAGAGAATCAAGAGTATGCCACTGCT TTGGATGTGGATTTCGATGACAGTGTGGAAATGACGATTGATTCTGAAACTAATCCACTTCCATCTGAACAGGGTACCAT AAACCCCACAGCTGAGCCTGAGAAGAAGTCATCTGCTAAATTTAGACAAGAGAGTGCACCCAAGAAAAAACTAATTTCCA AAAAGAAAGTAAAAAAGGTTTTAGAAATTCCTGGATCAGCAAAAAGGTGATTCCCTGTGCAGTATAGACAGCTTTAGCAT GACTTCCATGCTTTGTGTTCATTTCTCATGTATACTTGTTTGACTCTGGTGCAGGTTGAAGATCAAGGAGAAGGCTGTAT TAACTGATGTTTTCTCCAAGTACGGAAAAAGAGCTGTTCTTGCTTCAAAGGATAATTAGTGAATTGTTAATGATCAGAGA TTGTCATTGTCTAAACTAAAAAACCATGTTACCTGCTGGGGGACTTTTTAGTTGGCCTAGGTTCATGCTAGTTTTTGATT CAGTGTCCAATCAAGTTGTAGCATAGGAAGTATTGTCCAAAATTGTTATACTACTATCTCTCCTTAATATCAAGGCATTC TTTCTCAGTATCTCAACTCTTGTGTGGAAATTGAAATGTTTATTGGACATTCTCATGTACTCATGTGGGACTTGAGGACT TCAAATGTAGGACTGAGTTGAGGTATTAAGTGTTGTGTTTGATTCATTAAACACTGGGTTAAATTTGTTTGCTTTAGTAA ATAGACAAGATTTAGTTGAACTTAAG
CDS sequence (LotjaGi2g1v0315100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCGAGCAACTGCGTTTCCGCCACCGTTCAATTCGCCGCCGGTTCTCCCTCGCGCACACACGTGCCATTCTCTTGC ACCCGCACGTGTCGTTCAATCTTCCCCTTCTTCCATTTCGAGGTTCGAGTTTCGAGTATTTCAACAACCCTGCGTGAAGA GCCTGCGCGCCGTGCGCGGTGGCGGGGTTGTTACAGCCGTCGCGAAGAAGAAAGGTCGCGGCGGAGTTGGTATCGTGGGA GTCGACGAAGGTTTTGACGAGGAGGAGGAGGGTGATGGTATTGAATACTATGATGATGATGATGATGATGAAGAAGTAGA GGAAGGTGAATTTGATGATGATGGTGGTGATGATGGGGAAGAGGTGCTTCCGTTGGAGCAGATGAAGCAATGGTTTGACA AGAAGCCGAAGGGGTTTGGTGAAGGGAAAGTGTACGACACTTCTGTTGAGGATAAGCTGCTCGAGGAATTGCGCCAGAGT AGAGAAGCTCAAGCTGCTAATTTGGAGAAGCTTAAAGCCAATCCTGTCAAGCCTGCCTCCAACAAAAATGCTCAAAACCA GAAAGATGCTGAAGTTGTTCCACTTGGAGGTCGAGTGCTTTTGGCGAACCTGCCGAAGAAAAAGAACATCCACAGGGACC TGAAATCAGCTATGCAAGGGGTTCCGGGCATAATAAATATAGCTCCAGCTGTTACTGGAAACAAGAAGACAAGGGATCCT ATCTGCAAGGGTTTTGCTTTTGTTGATTTTAAGGACAAAAAGGATGCAGTTAGGTTTGTAGAGTTATACACTGGGCAAAC TCTAACTTTTGGCAAAATTCAGAAGCAAATAAAATGCGAGGTTGTAAATGCACAGTCTTCATCTTCTTCTCCTGAGTTAA GCAAAAATCTTGGTGCTCTTCCACGTCTCATGGACTCTCCCTTTGAAGAAGATTCAAATGAGGATTCTAATATGGATGAT TCTGCCGTCAGTTCCTGGGATGGGACTGATTCAAATGATTTGGATGAAGAACAGGAAAGTGATGGAGAGAATCAAGAGTA TGCCACTGCTTTGGATGTGGATTTCGATGACAGTGTGGAAATGACGATTGATTCTGAAACTAATCCACTTCCATCTGAAC AGGGTACCATAAACCCCACAGCTGAGCCTGAGAAGAAGTCATCTGCTAAATTTAGACAAGAGAGTGCACCCAAGAAAAAA CTAATTTCCAAAAAGAAAGTAAAAAAGGTTTTAGAAATTCCTGGATCAGCAAAAAGGTTGAAGATCAAGGAGAAGGCTGT ATTAACTGATGTTTTCTCCAAGTACGGAAAAAGAGCTGTTCTTGCTTCAAAGGATAATTAG
Protein sequence (LotjaGi2g1v0315100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRATAFPPPFNSPPVLPRAHTCHSLAPARVVQSSPSSISRFEFRVFQQPCVKSLRAVRGGGVVTAVAKKKGRGGVGIVG VDEGFDEEEEGDGIEYYDDDDDDEEVEEGEFDDDGGDDGEEVLPLEQMKQWFDKKPKGFGEGKVYDTSVEDKLLEELRQS REAQAANLEKLKANPVKPASNKNAQNQKDAEVVPLGGRVLLANLPKKKNIHRDLKSAMQGVPGIINIAPAVTGNKKTRDP ICKGFAFVDFKDKKDAVRFVELYTGQTLTFGKIQKQIKCEVVNAQSSSSSPELSKNLGALPRLMDSPFEEDSNEDSNMDD SAVSSWDGTDSNDLDEEQESDGENQEYATALDVDFDDSVEMTIDSETNPLPSEQGTINPTAEPEKKSSAKFRQESAPKKK LISKKKVKKVLEIPGSAKRLKIKEKAVLTDVFSKYGKRAVLASKDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 445 | 425 | 2.4E-133 | – | |
| Gene3D | 83 | 291 | 209 | 3.6E-6 | ||
| MobiDBLite | 88 | 120 | 33 | - | – | |
| Coils | 154 | 174 | 21 | - | – | |
| SUPERFAMILY | 174 | 285 | 112 | 1.33E-6 | ||
| ProSiteProfiles | 197 | 284 | 88 | 9.132 | ||
| CDD | 199 | 268 | 70 | 1.86767E-6 | – | |
| MobiDBLite | 283 | 344 | 62 | - | – | |
| MobiDBLite | 360 | 396 | 37 | - | – | |
| MobiDBLite | 362 | 383 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0315100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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