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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0316800 |
Transcript ID | LotjaGi2g1v0316800.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|A0A1J7I6W8|A0A1J7I6W8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0316800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79207457..79212802) extracted from Lotus japonicus Gifu genome v1.2.
TACTTTTTAAACGTACACAAATGAAGTGTGCACACATCGCGTTGAAGAGCATTGTGCTATATAATAGTCCTCAAATATCT AACAAAAAAATGTTATATAACATAATAAAAACTAGATGAACATCATTCTTCTGAACACCTAGCAATACTTGCAATTTTGT GGAGGTTTATCACTGCACAAATTGAAGAGTCATCCAAAACTAACACAAATTACTCGTGTTTATGGATGTCTGCTAAGGTG TTCACAGATCACAACAATTAATATAATGTTAGAATTCGATGCGGGTGATCTTTTTCTGAACTTTTCAAGTTTGCAGGTAT TTTATTGGCAGAAAAGCATAAAGCTCCTCTTCTTGCCCTTTCTCCTAATTCAGGTATATAAGCATGCAAAGTTTTGTCTT GTTAATAATATCATATAGAATGTTAGAATTGCAAGTCTTTTCTTTTCTTCTCCAATAACAACATGATATTTTATTGATAG AAAAGGACAAAGGTTACAAGAAAGAATGTGACTACTTTAAAGGCAAATGGGTTCCTGATAGGAGAGGCCCTTTGTACAAC GGTACAACATGTGGCGATACGATCCAAAATACCCATAATTGCATGACCAATGGCAGGCCTGACATGGGGTATCTTTATTG GAGATGGAAACCTAGGAGGTGCAATCTTCCAAGGTTTGATCCTATCAATTTTCTCCAAGTCGTTAAAAACAGGCACATAT CTTTTGTTGGGGATTCTCTAGCTAGGAACCAATTAGAGTCTCTTATTTGCATGTTATCCTCTGTTTCAACACCCAAACTT GACCTCTATAAAGGTATTGGTTGGTGGCACTTTCCTTCTCACAATGTAACCTTGTCATCATATTGGGCACCATTTCTTGT GCAAGGGGTTCAAAGACAATTAACCGGTCCCGGACCACATCATAATACAATGTATTTGGATCAAGTTAATGAAAAATGGG CTTTGGATATGGATAAAATGGATTTAATTGTGCTTGGATTTGGGCATTGGTTTGCTGGCATTCCTTCACTTTACTATGAG GGTGATTCAGTTTTGGGTTGCCAAAATTTTCCTAATCTTAATTGCACCGATATTGGGTTTTATGTCCCGATAAGAAAGGC TTTGAGGACTGCTCTTAATAGCATAATTGAGAGGAAAGCAGCTAAAGGAAATGGAGTTGGTGTCATTGTGAGAACATTCG CACCTGTTCATTTTGAAGGTGCTTGGGATAAAGGTGGCACTTGTTCAAAGAATACACCTTATAAAAAAGGGGAGAAGAAA CTCGAAGAAAAGGATGTTGAGATTAGAAAGATTGGAATGGAAGAATTACAAAATGCAAAGGAAAAAGCCAAACAATTTGG AGGGTTTAGGTTTGAAGTACTAGATGTAACCGTATTAGCATCAATGAGACCAGATGGCCATCCCGGTGCTTATAGAAAGC CATTCCCATTTGCTAAAGGGGTTGAAAAGAATGTGCAGAACGATTGTACTCATTGGTGTTTGCCAGGGCCTATAGACACT TGGAATGAAATCTTTATTGAGATGATAAAGAACTGGGAGGAACAACTAAGAAGTGAAGAGTGAGATATTTCTCTTACATA TCTTGTTAATAGAAAATTCTTGTTCTCACAATTGTTGCTCTTTCTTTTTTTTTTTATTTTAAAGTAAACTGAATTTCCAT TAAAAGCCATTCGGCAAACAAGACATAACATCTGAAACAACATAAGCTAAAGCAGCATCCGGAACCTCCTCCACCCAAAC TAAATCAGTATAGGTTTCAGCGGTCCGGGCTAGGAAATCCGCAACAGTATTACCCGTGCGTCTAACAAAAGAGAAAGAAA CAACATCAAAAGCACATAAAAGTGTGTGACACTCGCTAATAATAGAACTCAAATGGGAACGCCCAACCTCCTTGGCTTTC CAATAATTATATAGCTGTAAACAGTCTGTCTCCAAACAAATCCTCCGGAAGCCAAGATCAATAGCTAGCTGCATGGTCCA CCTCAAGCTCAGTGCTTCCGCCAAAAGAGGTGAGATAGCGGATTTGGGATAGGAGCATGCCGCCGCCATCACCTCCCCCC TACAGTTCCGTGCCACCATGCCCAACCCACTCAAGCCATTTCCGTGATAGGAAGCATCAAAATTGCACTTAATGATACCT GAAGCTGGCGGCTTCCACCTCGCGGGCAAGGCCACCGCCGGCGCTCTCATCTGGTCACGCACTTGGACCTCCTCCATCAA GCAGCTGACCCGCCTAAGCACGGTGTCCACCTTGATCTGCTGCTGCTGGAAATTGCTACGGTTCCTGGCCTCCCATATGG CGTAAGTCGTGGTCTGAACAAGAGCCATCACCCCGTCATCATGCAGCTCCACCACCGCTAACCAGAAATCTCGAAAAGTG GAGAAGGACGCCACTCGAAGTGCTAGCTGAGAAGCAAACCACACATGCTGCGCCGCTGGACAGTGGATGAATAAATGGTC CTCAGTCTCCCTTGCCGTTGCACAAAATGAGCACCCGGGGTCTACATCCACCTGCCGACTAAATAGCCTCTCCTTCAATG GCAAATAACCTTGTATAGCCCTCCAACATGTCTCCTTGCATCGTGGTAAAGCTCGTGAGGCCCAGAAAAAATTCCAGAAT CTGGGCTCAAGCATCACAGCCATGGATGATGATGTTTCAGCAAGCGATATCAGCTGGCTCATGAACTTGTACCCCTCCTT ACACGTGTAATGGCCATTGGTTGTGGTTGGCCAATGAAATTCATCCGGGCTACCTGGCACACCCAGCGGGATCGATAAAA TGCTAGCTGCAGTGCTTGGATTAAAGACAAGCTGAATCAAGTCTGTCCTCCACCTGTGCAAATCATGATCAATAAGCATA GAAACATGTGTTAGTTGAAATTCATCAACAAGGTCTTGGCGGTAGATGAGGGGGGCACCCCCTGGCACCCAATTTTCATT CCAAATATGAACCTGTGAACCATCACCAATTTTCCAAAGCCCTCCGCGCTCAAAAATCCAACTTGTTTTTAAGATACTGG TCCAGGCATAGCTTGGACGGTACCCCTTTTTTGCCTCCCGTAATGAAGTTCTATGGAAATAGACCCCGTTAAAGACTCGA GCAACCAAACTTTCCGGGCGAGTGTATAAGCGCCACCAGTTCTTCCCAACTAGAGCCATGTTAAAAGATTTAAAATCACG GAACCCAAGGCCCCCTTCCACTTTGTTCTTACATAAGTTCTTCCACTTTGTCCAATGTAGACCACGGCGGTTTGGGTCCC CACCCCAATAGAATCTCGCAATCATGCTATCAATATCGGTGCCCACTAGGGTGGACAAGTATCAAAATGGTCCATCAATA GACCACTCATCACAACCGTTGATATATAATATTTTAAGGTAGTGGTCTAGATTTTTCACCTTGCACTTGCGAAACAGGTG AAATTGGTGGCCCTAACAGATTTGTAAAATTTGCTAAGGCACCCCTCTCTCTCATGTGACTCCGCTTGTACTGTGACTTT CACTCGTCGCGCTCTCGCCGCCCCGAAGTCGCGGTGACCACGCCGCACCCCTCTGATAACGCAACCATCTTGATATTCTC CTTCTGGTTGTCTTCTTTCTCCGCCATCACTGCTGACCCCTCCTGACACTCGTTGAGGAGCTCCAACTTGGCAGCCCGGT CTGGGAGAAGCGGGTTCTTCTTTCTGGTTACCGCGCCGCCCTGAAGCGCCACGACGATGGGGTGCTTGAAATCGACAACT TCAATGGCTATGAAGGTATTGTATGGAGAATCCCGGCTCTGTTCATACTAAAATTGCTGGTTTTGTCAATTTACCTTAGG TTTGTAAGACTATGAAGCCTCAATTACTATTGTGTCAATTTGCTTCTAGCTCAGTATAAAGGTTGAATACTAAGGTCCCA TTTCCCCATCTTGCTTCTGTTTCCTTCTTTGTCACCTCTTGGAGCCGGATCCATGTTCAGGATCAAGGTGAAAGGAAGGA ATTGGAGAAAATTGCCCTGTTAAGATTGTTGGAAATTAGAGAAATACAATTACTATTGTTGAATATTAATTGCTACTACT CTTCCTAGAAGGTGTTGTGTTCATTTGTTACAACATGAGTTGCAGGTTTTGTCTGCAAAACAGAACTGTTTCTGGTGTGT GGTTTGGCACGCGGTGATTTGATCTTTGTGACTTGGAAGAAATGATTTGTTATTTAGGGGTGTGGCTTTGGAGCTGGACA GAGTTATGGAATTAATTCATATCAGAACTTGGAATTGACTAACAATGAAAATTAAATCGTTTCATCATTCTTTTTTCGAG TGGTGCACTAGCCCGACGTTGTGCTTAAAAGATGTGTGAGTGTGAGGATCGAGTAGTTGTTGGTGTGTGGGCTGCAGATT GCGTTTGACAGTGGATGATTTGGACAGTTGGTAGTTTTGGCATGGATTGTGTTTTGTCTTTGCTGAAGGTTGCTGTGCAG TAGCTTGTCTGGTTGCAGGTTCATGTTTTCTATTTGGTTGGCCAAGTGGTGCAGGTGTTTTTGCTGGTGGTGGTTTTTGG ATTCTTGTAATTTGCTGGCGATGGTTTATTTGGTGGGAACTAGGGTGTTGTTGGGGTTCTTTAGTTTCGGTAGTTGCTGC TGTTTTCTTGCTGTTTTTTATTTATTTTTTGCTTGTTATCTTCTCTTTTGGTAGTGTTTTGCTTTCTTGTATTGGCATTC CTTTTTCATGTATTCAGGTTCTAGCACCCCCTGTGCTAGCTTTGAATGCAATTGGCTTATCTAAAAAACTATTGTTGAAT ATTGTTAATCATGAAGAACTGCTTTGCTGACCTTAAAATATTTTCCTGCTATATTACTTGGTATTGGAGATAGCTGACGT TTCACATAAGATGTTTGCTGTCTTCTACTTCCCATGAGCTATTCAAATGCTTGCTGTCTTATGTTTCGTGTGACCAAACT TCAGGGAGAGATAGGATTACGAAATACACAAGACAAATACCCAGAGACTTATACGCCTGTATCATCCAGACAAGTATCAT GGAACATGAAGATGTATTGCAGCTGCTTTAGGAGAGAATCAAAGCTGTCTGTAGTTGTTTTGGATCCACCAAGTGTGTAC TGGAGGTGTAGGTCCCAACAGAGTTGAAGTTTCAGGACAGAACTTGCAAAGCTAATGCACGAAGATTATGTAGAATAGGA ATTATGTATTTATTGATTACACACTATTGAACTTCAATTTTGTACAATGTTGTAACAATAGTTCTGATTGCAATAAAATG AGACTTTTAAGTTTAATTCTTTGTTTACTTTCTTTTTGTGAATAAAATGAGGTTTTTGTACTCAAA
CDS sequence (LotjaGi2g1v0316800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAATGGCAGGCCTGACATGGGGTATCTTTATTGGAGATGGAAACCTAGGAGGTGCAATCTTCCAAGGTTTGATCC TATCAATTTTCTCCAAGTCGTTAAAAACAGGCACATATCTTTTGTTGGGGATTCTCTAGCTAGGAACCAATTAGAGTCTC TTATTTGCATGTTATCCTCTGTTTCAACACCCAAACTTGACCTCTATAAAGGTATTGGTTGGTGGCACTTTCCTTCTCAC AATGTAACCTTGTCATCATATTGGGCACCATTTCTTGTGCAAGGGGTTCAAAGACAATTAACCGGTCCCGGACCACATCA TAATACAATGTATTTGGATCAAGTTAATGAAAAATGGGCTTTGGATATGGATAAAATGGATTTAATTGTGCTTGGATTTG GGCATTGGTTTGCTGGCATTCCTTCACTTTACTATGAGGGTGATTCAGTTTTGGGTTGCCAAAATTTTCCTAATCTTAAT TGCACCGATATTGGGTTTTATGTCCCGATAAGAAAGGCTTTGAGGACTGCTCTTAATAGCATAATTGAGAGGAAAGCAGC TAAAGGAAATGGAGTTGGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTGCTTGGGATAAAGGTGGCACTT GTTCAAAGAATACACCTTATAAAAAAGGGGAGAAGAAACTCGAAGAAAAGGATGTTGAGATTAGAAAGATTGGAATGGAA GAATTACAAAATGCAAAGGAAAAAGCCAAACAATTTGGAGGGTTTAGGTTTGAAGTACTAGATGTAACCGTATTAGCATC AATGAGACCAGATGGCCATCCCGGTGCTTATAGAAAGCCATTCCCATTTGCTAAAGGGGTTGAAAAGAATGTGCAGAACG ATTGTACTCATTGGTGTTTGCCAGGGCCTATAGACACTTGGAATGAAATCTTTATTGAGATGATAAAGAACTGGGAGGAA CAACTAAGAAGTGAAGAGTGA
Protein sequence (LotjaGi2g1v0316800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNGRPDMGYLYWRWKPRRCNLPRFDPINFLQVVKNRHISFVGDSLARNQLESLICMLSSVSTPKLDLYKGIGWWHFPSH NVTLSSYWAPFLVQGVQRQLTGPGPHHNTMYLDQVNEKWALDMDKMDLIVLGFGHWFAGIPSLYYEGDSVLGCQNFPNLN CTDIGFYVPIRKALRTALNSIIERKAAKGNGVGVIVRTFAPVHFEGAWDKGGTCSKNTPYKKGEKKLEEKDVEIRKIGME ELQNAKEKAKQFGGFRFEVLDVTVLASMRPDGHPGAYRKPFPFAKGVEKNVQNDCTHWCLPGPIDTWNEIFIEMIKNWEE QLRSEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 318 | 317 | 1.8E-152 | – | |
PANTHER | 2 | 318 | 317 | 1.8E-152 | ||
Pfam | 22 | 314 | 293 | 5.9E-84 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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