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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0316800 |
Transcript ID | LotjaGi2g1v0316800.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|A0A151TGN5|A0A151TGN5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0316800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79207457..79213571) extracted from Lotus japonicus Gifu genome v1.2.
ATCCTTTTAGTTGTTAGACGATTTTTTTTTTTCGTTTGGCTTCATATGTACGCTCTCAAATAGTCAGCACTTGCATGTTA CACTCTTACAATCTCTCATTCTTTTATTAAGAAGTTTGTCACGTTAATTTTCATAATGCATGCTTTGGAATGAAAAAAAA ATTCAGCACATTTTTGTCATTGTGATCATTCCAGTTGTCCAAGATGCACTGGTACTGCATTTTCTCTATCTGCGTCTTTA TATAGAAAGAGAATCTCTTCTGCTCAGAACACAACACTCCACACACAAAAGAGTACTTAGCAGAAAATAAAGCAGGAATG CATGTCTTCAAAATGAGAAGTGCAAAAGCATATAGATACCAATCCCTCTCCCTCTTATGGAGACTTGTTCCCTGCACATT CCTAGCACTACTTTGTTTATACTTCTACCCTCACTTCAATAACTCATCTCCACCAACTGATCCGCATCCTTACTCCAGCT ATATCACATATAACCCCTCTCTTTCTGCTCCTGTCCTTTTTCCTCCCCCTTCTTATTCAGGTATGCATATCCGTATACAT GCATAATTTGATCTTGTTAAGGGATGCACGTACCAATTATTCTAAATTAAACCTTAAGCATTCAACCAATACATATGAAC AGTTTTATATATATTATATTTCTACAAAATCGTTCTTTAGCACAACAAGGTGTGCACGGCTGGGCACGATGGACCAATGC ATTTTGAAAGATTTTGTATTTTATTTAATCCATTAAAGTGTGATTTTGTTACTTTTTAAACGTACACAAATGAAGTGTGC ACACATCGCGTTGAAGAGCATTGTGCTATATAATAGTCCTCAAATATCTAACAAAAAAATGTTATATAACATAATAAAAA CTAGATGAACATCATTCTTCTGAACACCTAGCAATACTTGCAATTTTGTGGAGGTTTATCACTGCACAAATTGAAGAGTC ATCCAAAACTAACACAAATTACTCGTGTTTATGGATGTCTGCTAAGGTGTTCACAGATCACAACAATTAATATAATGTTA GAATTCGATGCGGGTGATCTTTTTCTGAACTTTTCAAGTTTGCAGGTATTTTATTGGCAGAAAAGCATAAAGCTCCTCTT CTTGCCCTTTCTCCTAATTCAGGTATATAAGCATGCAAAGTTTTGTCTTGTTAATAATATCATATAGAATGTTAGAATTG CAAGTCTTTTCTTTTCTTCTCCAATAACAACATGATATTTTATTGATAGAAAAGGACAAAGGTTACAAGAAAGAATGTGA CTACTTTAAAGGCAAATGGGTTCCTGATAGGAGAGGCCCTTTGTACAACGGTACAACATGTGGCGATACGATCCAAAATA CCCATAATTGCATGACCAATGGCAGGCCTGACATGGGGTATCTTTATTGGAGATGGAAACCTAGGAGGTGCAATCTTCCA AGGTTTGATCCTATCAATTTTCTCCAAGTCGTTAAAAACAGGCACATATCTTTTGTTGGGGATTCTCTAGCTAGGAACCA ATTAGAGTCTCTTATTTGCATGTTATCCTCTGTTTCAACACCCAAACTTGACCTCTATAAAGGTATTGGTTGGTGGCACT TTCCTTCTCACAATGTAACCTTGTCATCATATTGGGCACCATTTCTTGTGCAAGGGGTTCAAAGACAATTAACCGGTCCC GGACCACATCATAATACAATGTATTTGGATCAAGTTAATGAAAAATGGGCTTTGGATATGGATAAAATGGATTTAATTGT GCTTGGATTTGGGCATTGGTTTGCTGGCATTCCTTCACTTTACTATGAGGGTGATTCAGTTTTGGGTTGCCAAAATTTTC CTAATCTTAATTGCACCGATATTGGGTTTTATGTCCCGATAAGAAAGGCTTTGAGGACTGCTCTTAATAGCATAATTGAG AGGAAAGCAGCTAAAGGAAATGGAGTTGGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTGCTTGGGATAA AGGTGGCACTTGTTCAAAGAATACACCTTATAAAAAAGGGGAGAAGAAACTCGAAGAAAAGGATGTTGAGATTAGAAAGA TTGGAATGGAAGAATTACAAAATGCAAAGGAAAAAGCCAAACAATTTGGAGGGTTTAGGTTTGAAGTACTAGATGTAACC GTATTAGCATCAATGAGACCAGATGGCCATCCCGGTGCTTATAGAAAGCCATTCCCATTTGCTAAAGGGGTTGAAAAGAA TGTGCAGAACGATTGTACTCATTGGTGTTTGCCAGGGCCTATAGACACTTGGAATGAAATCTTTATTGAGATGATAAAGA ACTGGGAGGAACAACTAAGAAGTGAAGAGTGAGATATTTCTCTTACATATCTTGTTAATAGAAAATTCTTGTTCTCACAA TTGTTGCTCTTTCTTTTTTTTTTTATTTTAAAGTAAACTGAATTTCCATTAAAAGCCATTCGGCAAACAAGACATAACAT CTGAAACAACATAAGCTAAAGCAGCATCCGGAACCTCCTCCACCCAAACTAAATCAGTATAGGTTTCAGCGGTCCGGGCT AGGAAATCCGCAACAGTATTACCCGTGCGTCTAACAAAAGAGAAAGAAACAACATCAAAAGCACATAAAAGTGTGTGACA CTCGCTAATAATAGAACTCAAATGGGAACGCCCAACCTCCTTGGCTTTCCAATAATTATATAGCTGTAAACAGTCTGTCT CCAAACAAATCCTCCGGAAGCCAAGATCAATAGCTAGCTGCATGGTCCACCTCAAGCTCAGTGCTTCCGCCAAAAGAGGT GAGATAGCGGATTTGGGATAGGAGCATGCCGCCGCCATCACCTCCCCCCTACAGTTCCGTGCCACCATGCCCAACCCACT CAAGCCATTTCCGTGATAGGAAGCATCAAAATTGCACTTAATGATACCTGAAGCTGGCGGCTTCCACCTCGCGGGCAAGG CCACCGCCGGCGCTCTCATCTGGTCACGCACTTGGACCTCCTCCATCAAGCAGCTGACCCGCCTAAGCACGGTGTCCACC TTGATCTGCTGCTGCTGGAAATTGCTACGGTTCCTGGCCTCCCATATGGCGTAAGTCGTGGTCTGAACAAGAGCCATCAC CCCGTCATCATGCAGCTCCACCACCGCTAACCAGAAATCTCGAAAAGTGGAGAAGGACGCCACTCGAAGTGCTAGCTGAG AAGCAAACCACACATGCTGCGCCGCTGGACAGTGGATGAATAAATGGTCCTCAGTCTCCCTTGCCGTTGCACAAAATGAG CACCCGGGGTCTACATCCACCTGCCGACTAAATAGCCTCTCCTTCAATGGCAAATAACCTTGTATAGCCCTCCAACATGT CTCCTTGCATCGTGGTAAAGCTCGTGAGGCCCAGAAAAAATTCCAGAATCTGGGCTCAAGCATCACAGCCATGGATGATG ATGTTTCAGCAAGCGATATCAGCTGGCTCATGAACTTGTACCCCTCCTTACACGTGTAATGGCCATTGGTTGTGGTTGGC CAATGAAATTCATCCGGGCTACCTGGCACACCCAGCGGGATCGATAAAATGCTAGCTGCAGTGCTTGGATTAAAGACAAG CTGAATCAAGTCTGTCCTCCACCTGTGCAAATCATGATCAATAAGCATAGAAACATGTGTTAGTTGAAATTCATCAACAA GGTCTTGGCGGTAGATGAGGGGGGCACCCCCTGGCACCCAATTTTCATTCCAAATATGAACCTGTGAACCATCACCAATT TTCCAAAGCCCTCCGCGCTCAAAAATCCAACTTGTTTTTAAGATACTGGTCCAGGCATAGCTTGGACGGTACCCCTTTTT TGCCTCCCGTAATGAAGTTCTATGGAAATAGACCCCGTTAAAGACTCGAGCAACCAAACTTTCCGGGCGAGTGTATAAGC GCCACCAGTTCTTCCCAACTAGAGCCATGTTAAAAGATTTAAAATCACGGAACCCAAGGCCCCCTTCCACTTTGTTCTTA CATAAGTTCTTCCACTTTGTCCAATGTAGACCACGGCGGTTTGGGTCCCCACCCCAATAGAATCTCGCAATCATGCTATC AATATCGGTGCCCACTAGGGTGGACAAGTATCAAAATGGTCCATCAATAGACCACTCATCACAACCGTTGATATATAATA TTTTAAGGTAGTGGTCTAGATTTTTCACCTTGCACTTGCGAAACAGGTGAAATTGGTGGCCCTAACAGATTTGTAAAATT TGCTAAGGCACCCCTCTCTCTCATGTGACTCCGCTTGTACTGTGACTTTCACTCGTCGCGCTCTCGCCGCCCCGAAGTCG CGGTGACCACGCCGCACCCCTCTGATAACGCAACCATCTTGATATTCTCCTTCTGGTTGTCTTCTTTCTCCGCCATCACT GCTGACCCCTCCTGACACTCGTTGAGGAGCTCCAACTTGGCAGCCCGGTCTGGGAGAAGCGGGTTCTTCTTTCTGGTTAC CGCGCCGCCCTGAAGCGCCACGACGATGGGGTGCTTGAAATCGACAACTTCAATGGCTATGAAGGTATTGTATGGAGAAT CCCGGCTCTGTTCATACTAAAATTGCTGGTTTTGTCAATTTACCTTAGGTTTGTAAGACTATGAAGCCTCAATTACTATT GTGTCAATTTGCTTCTAGCTCAGTATAAAGGTTGAATACTAAGGTCCCATTTCCCCATCTTGCTTCTGTTTCCTTCTTTG TCACCTCTTGGAGCCGGATCCATGTTCAGGATCAAGGTGAAAGGAAGGAATTGGAGAAAATTGCCCTGTTAAGATTGTTG GAAATTAGAGAAATACAATTACTATTGTTGAATATTAATTGCTACTACTCTTCCTAGAAGGTGTTGTGTTCATTTGTTAC AACATGAGTTGCAGGTTTTGTCTGCAAAACAGAACTGTTTCTGGTGTGTGGTTTGGCACGCGGTGATTTGATCTTTGTGA CTTGGAAGAAATGATTTGTTATTTAGGGGTGTGGCTTTGGAGCTGGACAGAGTTATGGAATTAATTCATATCAGAACTTG GAATTGACTAACAATGAAAATTAAATCGTTTCATCATTCTTTTTTCGAGTGGTGCACTAGCCCGACGTTGTGCTTAAAAG ATGTGTGAGTGTGAGGATCGAGTAGTTGTTGGTGTGTGGGCTGCAGATTGCGTTTGACAGTGGATGATTTGGACAGTTGG TAGTTTTGGCATGGATTGTGTTTTGTCTTTGCTGAAGGTTGCTGTGCAGTAGCTTGTCTGGTTGCAGGTTCATGTTTTCT ATTTGGTTGGCCAAGTGGTGCAGGTGTTTTTGCTGGTGGTGGTTTTTGGATTCTTGTAATTTGCTGGCGATGGTTTATTT GGTGGGAACTAGGGTGTTGTTGGGGTTCTTTAGTTTCGGTAGTTGCTGCTGTTTTCTTGCTGTTTTTTATTTATTTTTTG CTTGTTATCTTCTCTTTTGGTAGTGTTTTGCTTTCTTGTATTGGCATTCCTTTTTCATGTATTCAGGTTCTAGCACCCCC TGTGCTAGCTTTGAATGCAATTGGCTTATCTAAAAAACTATTGTTGAATATTGTTAATCATGAAGAACTGCTTTGCTGAC CTTAAAATATTTTCCTGCTATATTACTTGGTATTGGAGATAGCTGACGTTTCACATAAGATGTTTGCTGTCTTCTACTTC CCATGAGCTATTCAAATGCTTGCTGTCTTATGTTTCGTGTGACCAAACTTCAGGGAGAGATAGGATTACGAAATACACAA GACAAATACCCAGAGACTTATACGCCTGTATCATCCAGACAAGTATCATGGAACATGAAGATGTATTGCAGCTGCTTTAG GAGAGAATCAAAGCTGTCTGTAGTTGTTTTGGATCCACCAAGTGTGTACTGGAGGTGTAGGTCCCAACAGAGTTGAAGTT TCAGGACAGAACTTGCAAAGCTAATGCACGAAGATTATGTAGAATAGGAATTATGTATTTATTGATTACACACTATTGAA CTTCAATTTTGTACAATGTTGTAACAATAGTTCTGATTGCAATAAAATGAGACTTTTAAGTTTAATTCTTTGTTTACTTT CTTTTTGTGAATAAAATGAGGTTTTTGTACTCAAA
CDS sequence (LotjaGi2g1v0316800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGTCTTCAAAATGAGAAGTGCAAAAGCATATAGATACCAATCCCTCTCCCTCTTATGGAGACTTGTTCCCTGCAC ATTCCTAGCACTACTTTGTTTATACTTCTACCCTCACTTCAATAACTCATCTCCACCAACTGATCCGCATCCTTACTCCA GCTATATCACATATAACCCCTCTCTTTCTGCTCCTGTCCTTTTTCCTCCCCCTTCTTATTCAGGTATTTTATTGGCAGAA AAGCATAAAGCTCCTCTTCTTGCCCTTTCTCCTAATTCAGAAAAGGACAAAGGTTACAAGAAAGAATGTGACTACTTTAA AGGCAAATGGGTTCCTGATAGGAGAGGCCCTTTGTACAACGGTACAACATGTGGCGATACGATCCAAAATACCCATAATT GCATGACCAATGGCAGGCCTGACATGGGGTATCTTTATTGGAGATGGAAACCTAGGAGGTGCAATCTTCCAAGGTTTGAT CCTATCAATTTTCTCCAAGTCGTTAAAAACAGGCACATATCTTTTGTTGGGGATTCTCTAGCTAGGAACCAATTAGAGTC TCTTATTTGCATGTTATCCTCTGTTTCAACACCCAAACTTGACCTCTATAAAGGTATTGGTTGGTGGCACTTTCCTTCTC ACAATGTAACCTTGTCATCATATTGGGCACCATTTCTTGTGCAAGGGGTTCAAAGACAATTAACCGGTCCCGGACCACAT CATAATACAATGTATTTGGATCAAGTTAATGAAAAATGGGCTTTGGATATGGATAAAATGGATTTAATTGTGCTTGGATT TGGGCATTGGTTTGCTGGCATTCCTTCACTTTACTATGAGGGTGATTCAGTTTTGGGTTGCCAAAATTTTCCTAATCTTA ATTGCACCGATATTGGGTTTTATGTCCCGATAAGAAAGGCTTTGAGGACTGCTCTTAATAGCATAATTGAGAGGAAAGCA GCTAAAGGAAATGGAGTTGGTGTCATTGTGAGAACATTCGCACCTGTTCATTTTGAAGGTGCTTGGGATAAAGGTGGCAC TTGTTCAAAGAATACACCTTATAAAAAAGGGGAGAAGAAACTCGAAGAAAAGGATGTTGAGATTAGAAAGATTGGAATGG AAGAATTACAAAATGCAAAGGAAAAAGCCAAACAATTTGGAGGGTTTAGGTTTGAAGTACTAGATGTAACCGTATTAGCA TCAATGAGACCAGATGGCCATCCCGGTGCTTATAGAAAGCCATTCCCATTTGCTAAAGGGGTTGAAAAGAATGTGCAGAA CGATTGTACTCATTGGTGTTTGCCAGGGCCTATAGACACTTGGAATGAAATCTTTATTGAGATGATAAAGAACTGGGAGG AACAACTAAGAAGTGAAGAGTGA
Protein sequence (LotjaGi2g1v0316800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHVFKMRSAKAYRYQSLSLLWRLVPCTFLALLCLYFYPHFNNSSPPTDPHPYSSYITYNPSLSAPVLFPPPSYSGILLAE KHKAPLLALSPNSEKDKGYKKECDYFKGKWVPDRRGPLYNGTTCGDTIQNTHNCMTNGRPDMGYLYWRWKPRRCNLPRFD PINFLQVVKNRHISFVGDSLARNQLESLICMLSSVSTPKLDLYKGIGWWHFPSHNVTLSSYWAPFLVQGVQRQLTGPGPH HNTMYLDQVNEKWALDMDKMDLIVLGFGHWFAGIPSLYYEGDSVLGCQNFPNLNCTDIGFYVPIRKALRTALNSIIERKA AKGNGVGVIVRTFAPVHFEGAWDKGGTCSKNTPYKKGEKKLEEKDVEIRKIGMEELQNAKEKAKQFGGFRFEVLDVTVLA SMRPDGHPGAYRKPFPFAKGVEKNVQNDCTHWCLPGPIDTWNEIFIEMIKNWEEQLRSEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
TMHMM | 19 | 38 | 20 | - | – | |
Phobius | 20 | 37 | 18 | - | – | |
Phobius | 38 | 460 | 423 | - | – | |
PANTHER | 88 | 452 | 365 | 1.3E-170 | – | |
PANTHER | 88 | 452 | 365 | 1.3E-170 | ||
Pfam | 101 | 155 | 55 | 1.8E-21 | ||
Pfam | 156 | 448 | 293 | 1.8E-83 | ||
Coils | 442 | 460 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0316800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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