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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0317000 |
| Transcript ID | LotjaGi2g1v0317000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|A0A1J7I6W8|A0A1J7I6W8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0317000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79230103..79231851) extracted from Lotus japonicus Gifu genome v1.2.
GAATGAAAAATATTCAGCACATTTTTGTCATTGTGATCATTCCAATTATCCAAGATGCAGGACTACATTTTTTTTTCTGT CCGCGCCTTTATATAGCAGGAAATAAAGCAGGAATTGAAGGAATGAATGCCTTCATCAAAATGAGAAGTGCAAAACCATT CAAATATCAACCCCTCTCCCCCATCTGGAAACTTCTTCTCTGCATATTCCTAGCACTGCTTTCTTTATACTATTACCCTC ATTCCAGCTATATCACCTACCACTCCTCTCCTCCTCCTTATTCAGGTATACGTACACACACACACACACACACACACACA CACATATATATATATGCATAAATCTTTTTGTCTTATTAACATCATTATATATAATTTTTAGAAGTGCAAGGATATTTTCT AACTTATCAAATTAGTAGGTATTTTATCAACAGGAAAGAACAAAAGTTACAAGAAACAGTGTGACTACTTTAATGGCAAT TGGGTTCCTGATAGGAGAGGCCCTTTGTATAATGGTACGACCTGTGGTATGATCCTAGAAAGCTATAATTGCATGACCAA TGGCAGGCCTGACTCAGAATATCTTTACTGGAGATGGAAACCTAGGAGGTGCAATCTTCCGAGGTTTGAACCTCACACTT TTCTCCAACTCATTCAGAACAAGCATATAGCTTTTGTTGGGGATTCTATAGCTAGAAACCAATTAGAATCCCTTCTTTGC ATGTTAGCCACTGCTTCAACACCTAAACTTGACCCCCGTAAAGGTTTGGGTTGGTGGCATTTTCCTTCACACAATGCAAC CATATCATCATATTGGGCCCCATTTCTTGTACAAGGTGTTCCAATATCACGAAACGTGTCAGGACCACGTCATAATACAG TGTATTTGGATCAAGTTAATGATGGTTGGGCAAGGGATATTGATCAAATGGACTTAATTGTGCTTGGATTTGGGAATTGG TTTCTGAGCTTGCCTTCAGTTTACTATGAGGCTAGTTCAGTTTTAGGTTGTCGAAACATTCCTGGTCTTAATTGCACTGA TATTGGATTTTATATTCCATTAAGAAAGGCTTTAAGGACTGCTCTTCATAGCATCATTGAGAGAAAAGCAGCTAAAGGAA ATGGAGGTGGTGTCATTGTGAGAACATCCTCACCTTCTCACTTTAAAGGTACTTGGGATAGTGGTGGTACTTGTTCAATG ACTAAACCTTATGAAAAAGGGGAGAAGAAACTTCAAAAATGGGATGCTGAGATTAGAAAGATTGAAATAGAAGAACTACA AAATGCTAAGGAAAAAGCCAAACAGTTAGGAGGGTTTAAGTTTAAGGCACTTGATGTAACAAAATTAGCATTAATGAGAT CAGATGGGCATCCCAGTATTTATAGGAGTGCATTCCTAGTTGCTAAAGAGGTTCCAAAAAATGTGCAGAAAGATTGTTCT CACTGGTGCCTGCCAGGGCCTATAGATACATGGAATGAGATTTTCCTAGAGATGGTGAAGAAGTGGGAAGAATAGCCGAG GATTGAAGTGTTCTTGGACGTTCATTTTATATATCTTATTCATAATTTATTACACTAATCTTTCCAAAGAGATCACATTT ATTCTGCTTAAGTTTTCTGATTTCATGATGGGATGTAGGTTAATAAGTAGAGAGGTTTTTACTTGTAAGTTTTCAATTTA AATTGTAAAGACAAAAATGTTTGGCGGGCACTAGATATGTATTGCCAGCATTTTCCTGCTAAGTTTTTC
CDS sequence (LotjaGi2g1v0317000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCTAGAAAGCTATAATTGCATGACCAATGGCAGGCCTGACTCAGAATATCTTTACTGGAGATGGAAACCTAGGAG GTGCAATCTTCCGAGGTTTGAACCTCACACTTTTCTCCAACTCATTCAGAACAAGCATATAGCTTTTGTTGGGGATTCTA TAGCTAGAAACCAATTAGAATCCCTTCTTTGCATGTTAGCCACTGCTTCAACACCTAAACTTGACCCCCGTAAAGGTTTG GGTTGGTGGCATTTTCCTTCACACAATGCAACCATATCATCATATTGGGCCCCATTTCTTGTACAAGGTGTTCCAATATC ACGAAACGTGTCAGGACCACGTCATAATACAGTGTATTTGGATCAAGTTAATGATGGTTGGGCAAGGGATATTGATCAAA TGGACTTAATTGTGCTTGGATTTGGGAATTGGTTTCTGAGCTTGCCTTCAGTTTACTATGAGGCTAGTTCAGTTTTAGGT TGTCGAAACATTCCTGGTCTTAATTGCACTGATATTGGATTTTATATTCCATTAAGAAAGGCTTTAAGGACTGCTCTTCA TAGCATCATTGAGAGAAAAGCAGCTAAAGGAAATGGAGGTGGTGTCATTGTGAGAACATCCTCACCTTCTCACTTTAAAG GTACTTGGGATAGTGGTGGTACTTGTTCAATGACTAAACCTTATGAAAAAGGGGAGAAGAAACTTCAAAAATGGGATGCT GAGATTAGAAAGATTGAAATAGAAGAACTACAAAATGCTAAGGAAAAAGCCAAACAGTTAGGAGGGTTTAAGTTTAAGGC ACTTGATGTAACAAAATTAGCATTAATGAGATCAGATGGGCATCCCAGTATTTATAGGAGTGCATTCCTAGTTGCTAAAG AGGTTCCAAAAAATGTGCAGAAAGATTGTTCTCACTGGTGCCTGCCAGGGCCTATAGATACATGGAATGAGATTTTCCTA GAGATGGTGAAGAAGTGGGAAGAATAG
Protein sequence (LotjaGi2g1v0317000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILESYNCMTNGRPDSEYLYWRWKPRRCNLPRFEPHTFLQLIQNKHIAFVGDSIARNQLESLLCMLATASTPKLDPRKGL GWWHFPSHNATISSYWAPFLVQGVPISRNVSGPRHNTVYLDQVNDGWARDIDQMDLIVLGFGNWFLSLPSVYYEASSVLG CRNIPGLNCTDIGFYIPLRKALRTALHSIIERKAAKGNGGGVIVRTSSPSHFKGTWDSGGTCSMTKPYEKGEKKLQKWDA EIRKIEIEELQNAKEKAKQLGGFKFKALDVTKLALMRSDGHPSIYRSAFLVAKEVPKNVQKDCSHWCLPGPIDTWNEIFL EMVKKWEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 326 | 325 | 1.1E-147 | – | |
| PANTHER | 2 | 326 | 325 | 1.1E-147 | ||
| Pfam | 3 | 29 | 27 | 5.3E-10 | ||
| Pfam | 30 | 322 | 293 | 1.1E-83 | ||
| Coils | 228 | 260 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0317000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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