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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0322200 |
| Transcript ID | LotjaGi2g1v0322200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein; TAIR: AT1G23390.1 Kelch repeat-containing F-box family protein; Swiss-Prot: sp|Q9LDE3|FBK9_ARATH F-box/kelch-repeat protein At1g23390; TrEMBL-Plants: tr|G7JXX3|G7JXX3_MEDTR F-box/kelch-repeat plant protein; Found in the gene: LotjaGi2g1v0322200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79699506..79701440) extracted from Lotus japonicus Gifu genome v1.2.
GTGCAAGCAGAAATGGTTGCTAGCATTTTCTCAATATATAGAAATTTATTAATTGGTTCGATTGTTCGAAGGAGTCAATG AGTGAGTTACCAAGACACCCGTTCACATTCTGACACGGATGACGTGGCACCCACCCACCATTGGTCACACTGATTCATGC GATTTCCAATTTTCAATTCTCTTTTCCCACCCAAGGCACCATTATATAAACCTGCACACCTCTGTTTCTCTTTCACTCTC ACATCACCACAACCACAACCAGAAGAACTAGCTTGCAACAATGGCAGCTCAATGGGAATTAGCAGAAGAAGCACCCATCC ATGGAGATGTCTTAGAGACAATCCTCTCACACGTGCCACTCATCCACTTGGTCCCCGCTTGTCACGTGTCAAACACATGG AAGCATGCGGTGTTTTCCTCACTCGCTCACACCAGAACCATTAAGCCATGGCTAATCATCCTCACACAGAGCACTCGTGC CTCGCACGTGATAACCGCGCACGCTTACGATCCTCGCTCGCACGTGTGGGTGGAGATGAAACTACCCCACCCTTTGAAGG GCCACCCCTCCGCCACCGCCGCCGTCCGATCATCTCACTCCACGCTGCTCTACACTCTCTCCCCCGCCGAATTCGCCTTC TCCATCGACGCGCTGCATCTCGACTGGCACCACGCTCCCGCCCCACGCGTGTGGCGTACTGACCCGATCGTGGCGCGAGT TGGACAGCGCGTGGTGGTAGCTGGCGGCGCGTGTGACTTCGAGGATGACCCGCTGGCGGTGGAGATGTATGACATGGAGA GTAACACCTGGGTGATGTGCCAGTCCATGCCGGCTATGCTGAAGGGCTCGTCGGGGTCGACGTGGCTTTCGGTCGCCGTC GCCGGAGAGGCGGTGCTTGTGACGGAGGAAAGCTCCGGTATGACGTTTTGTTTTGACACGGTTTCGATGAAGTGGGATGG GCCGTATGATCTTTGTCCTGACCAGAGTGTTGGTTACTGCGTTACGGGGATGTTAGGGAAGAGGTTGATGGTGGCGGGGG TGGTGGGGGACGGTGAGGACGTGAAAGCGGTGAAGCTGTGGGCGGTTAAGGGGGGGTTGGGTTCGGGAATGATGGAGGAA GTGGGTGAGATGCCGGAGGAGCTGTTGGAGAAGTTCAAAGGTGATTCTGATGAGTTGGGTTCGTTGGAGGTGACTTGGGT TGGGAATTTTGTTTACTTGCGGAACACGTTGGAGATTGAGGAGTTGGTGATGTGTGAAGTTGTGAATGGGAGTAGGTGTG AGTGGAGGAGTGTGCGCAACGCCGCTGTGGATGGCGGCACAAGGATGGTGGTTTGCGGCAGCGAAGTGCGCTTGGAGGAT CTGCAAAGCGCAATGGTTTCTGGGATTCAAACATTTCGTACAAAAGAATTATGAAATGGGCGAGTTGATTGTTCTCATGG GTCGGCGTCTACCATTTAGTTCGCTGGCTGCATGATGATAAATTAATTTTACGGCAATCTGTTGTGGAGATATTTTATTC AACACCAAACCTGTGTGTTGATTATTGAAGTTGATTTTTCTTTGTCTCGTTGAAATTTAAGTCTTGTTTGTTTTGCTTCG GATTTTACCTTGTTTTGAGCGAGAATAACCATGTTTGGTGTTTCCTCAACAAGGTTTTTTTTCTGTCTGAGCAGAATATT TGAATCGGAATTTGGTTTCAGTGGAATTAAGCAATGCTCTTTGTGAATTAGAGGTGTTAATTTTTTTTTCTTCTGTTTAT GCTTTTTATTGTAAACCAAACCGATCATTAGTGTTCATTTGTTCTCTGTTTGTGTTGACATTGGCTTAAAAAATGACTCC GTTTGATTATCGTTTGAACTTCTTCAATTGACAAAACCAACTACCTTTTTTATTTTTTTACGTTTACTTCCTGAAATGGA TGAAAGGGTAGGTTA
CDS sequence (LotjaGi2g1v0322200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTCAATGGGAATTAGCAGAAGAAGCACCCATCCATGGAGATGTCTTAGAGACAATCCTCTCACACGTGCCACT CATCCACTTGGTCCCCGCTTGTCACGTGTCAAACACATGGAAGCATGCGGTGTTTTCCTCACTCGCTCACACCAGAACCA TTAAGCCATGGCTAATCATCCTCACACAGAGCACTCGTGCCTCGCACGTGATAACCGCGCACGCTTACGATCCTCGCTCG CACGTGTGGGTGGAGATGAAACTACCCCACCCTTTGAAGGGCCACCCCTCCGCCACCGCCGCCGTCCGATCATCTCACTC CACGCTGCTCTACACTCTCTCCCCCGCCGAATTCGCCTTCTCCATCGACGCGCTGCATCTCGACTGGCACCACGCTCCCG CCCCACGCGTGTGGCGTACTGACCCGATCGTGGCGCGAGTTGGACAGCGCGTGGTGGTAGCTGGCGGCGCGTGTGACTTC GAGGATGACCCGCTGGCGGTGGAGATGTATGACATGGAGAGTAACACCTGGGTGATGTGCCAGTCCATGCCGGCTATGCT GAAGGGCTCGTCGGGGTCGACGTGGCTTTCGGTCGCCGTCGCCGGAGAGGCGGTGCTTGTGACGGAGGAAAGCTCCGGTA TGACGTTTTGTTTTGACACGGTTTCGATGAAGTGGGATGGGCCGTATGATCTTTGTCCTGACCAGAGTGTTGGTTACTGC GTTACGGGGATGTTAGGGAAGAGGTTGATGGTGGCGGGGGTGGTGGGGGACGGTGAGGACGTGAAAGCGGTGAAGCTGTG GGCGGTTAAGGGGGGGTTGGGTTCGGGAATGATGGAGGAAGTGGGTGAGATGCCGGAGGAGCTGTTGGAGAAGTTCAAAG GTGATTCTGATGAGTTGGGTTCGTTGGAGGTGACTTGGGTTGGGAATTTTGTTTACTTGCGGAACACGTTGGAGATTGAG GAGTTGGTGATGTGTGAAGTTGTGAATGGGAGTAGGTGTGAGTGGAGGAGTGTGCGCAACGCCGCTGTGGATGGCGGCAC AAGGATGGTGGTTTGCGGCAGCGAAGTGCGCTTGGAGGATCTGCAAAGCGCAATGGTTTCTGGGATTCAAACATTTCGTA CAAAAGAATTATGA
Protein sequence (LotjaGi2g1v0322200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAQWELAEEAPIHGDVLETILSHVPLIHLVPACHVSNTWKHAVFSSLAHTRTIKPWLIILTQSTRASHVITAHAYDPRS HVWVEMKLPHPLKGHPSATAAVRSSHSTLLYTLSPAEFAFSIDALHLDWHHAPAPRVWRTDPIVARVGQRVVVAGGACDF EDDPLAVEMYDMESNTWVMCQSMPAMLKGSSGSTWLSVAVAGEAVLVTEESSGMTFCFDTVSMKWDGPYDLCPDQSVGYC VTGMLGKRLMVAGVVGDGEDVKAVKLWAVKGGLGSGMMEEVGEMPEELLEKFKGDSDELGSLEVTWVGNFVYLRNTLEIE ELVMCEVVNGSRCEWRSVRNAAVDGGTRMVVCGSEVRLEDLQSAMVSGIQTFRTKEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 362 | 361 | 9.0E-172 | – | |
| PANTHER | 2 | 362 | 361 | 9.0E-172 | – | |
| Gene3D | 36 | 242 | 207 | 1.3E-10 | ||
| SUPERFAMILY | 56 | 268 | 213 | 1.57E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0322200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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