Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015915
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 131 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.900s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0120939.1
n.a. PREDICTED: LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|359487672|ref|XP_002277646.2| chr0 53828260 53833168 +
2 domain predictions
1 GO term
Lj0g3v0120939.2
n.a. PREDICTED: LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|359487672|ref|XP_002277646.2| chr0 53828260 53833168 +
2 domain predictions
1 GO term
Lj0g3v0213109.1
n.a. PREDICTED: RING finger protein B-like isoform X2 [Cicer arietinum] gi|502151887|ref|XP_004508662.1| chr0 107543985 107544305 +
2 domain predictions
1 GO term
Lj0g3v0213119.1
n.a. PREDICTED: kelch domain-containing protein 3-like [Glycine max] gi|356562638|ref|XP_003549576.1| chr0 107544658 107547737 +
2 domain predictions
1 GO term
Lj0g3v0295679.1
n.a. F-box [Medicago truncatula] gi|357483729|ref|XP_003612151.1| chr0 153629302 153630728 -
2 domain predictions
1 GO term
Lj1g3v0292630.1
n.a. PREDICTED: kelch domain-containing protein 4-like [Glycine max] gi|356508772|ref|XP_003523128.1| chr1 3379932 3388258 +
2 domain predictions
1 GO term
Lj1g3v3779370.1
n.a. PREDICTED: kelch repeat-containing protein At3g27220-like isoform X1 [Cicer arietinum] gi|502156650|ref|XP_004510579.1| chr1 43343069 43346483 +
2 domain predictions
1 GO term
Lj1g3v4274410.1
n.a. Guanylate kinase [Medicago truncatula] gi|357509727|ref|XP_003625152.1| chr1 50282041 50286108 +
2 domain predictions
1 GO term
Lj1g3v4482340.1
n.a. PREDICTED: F-box/kelch-repeat protein OR23-like [Glycine max] gi|356503594|ref|XP_003520592.1| chr1 52456889 52462841 -
2 domain predictions
1 GO term
Lj1g3v5021230.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Glycine max] gi|356506030|ref|XP_003521791.1| chr1 61283212 61285468 +
2 domain predictions
1 GO term
Lj3g3v0787290.1
n.a. PREDICTED: nitrile-specifier protein 5-like [Cicer arietinum] gi|502088392|ref|XP_004488809.1| chr3 9384024 9386562 +
2 domain predictions
1 GO term
Lj3g3v1294420.1
n.a. PREDICTED: serine/threonine-protein phosphatase BSL2-like [Glycine max] gi|356550064|ref|XP_003543410.1| chr3 16460160 16474892 -
2 domain predictions
1 GO term
Lj3g3v1294420.3
n.a. PREDICTED: serine/threonine-protein phosphatase BSL2-like [Glycine max] gi|356550064|ref|XP_003543410.1| chr3 16460160 16475156 -
2 domain predictions
1 GO term
Lj3g3v2058560.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g51550-like [Cicer arietinum] gi|502148066|ref|XP_004507024.1| chr3 26494879 26498659 +
2 domain predictions
1 GO term
Lj3g3v2058570.1
n.a. n.a. chr3 26498793 26503781 +
2 domain predictions
1 GO term
Lj3g3v2058580.1
n.a. PREDICTED: kelch repeat-containing protein At3g27220-like isoform X1 [Cicer arietinum] gi|502148068|ref|XP_004507025.1| chr3 26498909 26503236 -
2 domain predictions
1 GO term
Lj3g3v2248250.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g80440-like [Cicer arietinum] gi|502147661|ref|XP_004506867.1| chr3 27841622 27843073 +
2 domain predictions
1 GO term
Lj3g3v2928410.1
n.a. BRI1 suppressor 1 (BSU1)-like 2 isoform 1 [Theobroma cacao] gi|508786020|gb|EOY33276.1| chr3 36606657 36618050 +
2 domain predictions
1 GO term
Lj3g3v2928410.2
n.a. BRI1 suppressor 1 (BSU1)-like 2 isoform 1 [Theobroma cacao] gi|508786020|gb|EOY33276.1| chr3 36607398 36618050 +
2 domain predictions
1 GO term
Lj4g3v0153680.1
n.a. PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Cicer arietinum] gi|502149858|ref|XP_004507689.1| chr4 1697188 1703846 +
2 domain predictions
1 GO term
Lj4g3v1721950.1
n.a. PREDICTED: actin-fragmin kinase-like [Glycine max] gi|356513479|ref|XP_003525441.1| chr4 24780736 24784554 -
2 domain predictions
1 GO term
Lj4g3v2370480.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356563867|ref|XP_003550179.1| chr4 32642746 32650367 +
2 domain predictions
1 GO term
Lj4g3v2370480.2
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356563867|ref|XP_003550179.1| chr4 32642746 32650367 +
2 domain predictions
1 GO term
Lj4g3v3113210.1
n.a. circadian clock-associated FKF1 [Glycine max] gi|351727583|ref|NP_001235886.1| chr4 41619472 41622815 -
2 domain predictions
1 GO term
Lj5g3v0308810.1
n.a. PREDICTED: F-box/kelch-repeat protein At5g43190-like [Glycine max] gi|356577799|ref|XP_003557010.1| chr5 2971123 2973347 +
2 domain predictions
1 GO term
Lj5g3v0890630.1
n.a. PREDICTED: guanylate kinase-like [Glycine max] gi|356504801|ref|XP_003521183.1| chr5 13210246 13214177 -
2 domain predictions
1 GO term
Lj5g3v1496790.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356576793|ref|XP_003556514.1| chr5 21736421 21743697 -
2 domain predictions
1 GO term
Lj5g3v1681440.2
n.a. PREDICTED: serine/threonine-protein phosphatase BSL1-like [Glycine max] gi|356500242|ref|XP_003518942.1| chr5 23874799 23900121 -
2 domain predictions
1 GO term
Lj5g3v1699040.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356576361|ref|XP_003556301.1| chr5 24550871 24556764 -
2 domain predictions
1 GO term
Lj5g3v1770480.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform 1 [Glycine max] gi|356576309|ref|XP_003556275.1| chr5 25171245 25174479 +
2 domain predictions
1 GO term
Lj5g3v1770480.2
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform 1 [Glycine max] gi|356576309|ref|XP_003556275.1| chr5 25172286 25177886 +
2 domain predictions
1 GO term
Lj6g3v1368660.1
n.a. clock-associated PAS protein ZEITLUPE 2 [Glycine max] gi|351727148|ref|NP_001235871.1| chr6 16175863 16181915 -
2 domain predictions
1 GO term
Lj6g3v1368660.3
n.a. PREDICTED: adagio protein 1-like [Cicer arietinum] gi|502085564|ref|XP_004487946.1| chr6 16175863 16181915 -
2 domain predictions
1 GO term
Lj6g3v1368670.1
n.a. n.a. chr6 16175863 16178196 +
2 domain predictions
1 GO term
Lj6g3v2055760.1
n.a. PREDICTED: kelch-like protein 8-like [Glycine max] gi|356549387|ref|XP_003543075.1| chr6 24315980 24317735 +
2 domain predictions
1 GO term
LotjaGi0g1v0000200.1
n.a. Guanylate kinase; TAIR: AT3G57550.1 guanylate kinase; Swiss-Prot: sp|Q9M682|GMK2_ARATH Guanylate kinase 2; TrEMBL-Plants: tr|A0A0B2P9S7|A0A0B2P9S7_GLYSO Guanylate kinase; Found in the gene: LotjaGi0g1v0000200 LjG1.1_chr0 1083521 1087800 +
2 domain predictions
1 GO term
LotjaGi0g1v0000200.2
n.a. Guanylate kinase; TAIR: AT3G57550.1 guanylate kinase; Swiss-Prot: sp|Q9M682|GMK2_ARATH Guanylate kinase 2; TrEMBL-Plants: tr|A0A0B2P9S7|A0A0B2P9S7_GLYSO Guanylate kinase; Found in the gene: LotjaGi0g1v0000200 LjG1.1_chr0 1083550 1087644 +
2 domain predictions
1 GO term
LotjaGi1g1v0217700.1
n.a. Kelch repeat-containing protein; TAIR: AT1G74510.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510; TrEMBL-Plants: tr|A0A0S3RG77|A0A0S3RG77_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0217700 LjG1.1_chr1 48192944 48198907 +
3 domain predictions
1 GO term
LotjaGi1g1v0217700.2
n.a. Kelch repeat-containing protein; TAIR: AT1G74510.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510; TrEMBL-Plants: tr|A0A0S3RG77|A0A0S3RG77_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0217700 LjG1.1_chr1 48194009 48195334 +
3 domain predictions
1 GO term
LotjaGi1g1v0234700.1
n.a. Kelch domain-containing protein 4; TAIR: AT5G50310.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q921I2|KLDC4_MOUSE Kelch domain-containing protein 4; TrEMBL-Plants: tr|A0A0S3RG42|A0A0S3RG42_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0234700 LjG1.1_chr1 55440604 55451155 -
3 domain predictions
1 GO term
LotjaGi1g1v0234700.2
n.a. Kelch domain-containing protein 4; TAIR: AT5G50310.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q921I2|KLDC4_MOUSE Kelch domain-containing protein 4; TrEMBL-Plants: tr|A0A0R0KET3|A0A0R0KET3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0234700 LjG1.1_chr1 55441395 55451089 -
3 domain predictions
1 GO term
LotjaGi1g1v0234700.3
n.a. Kelch domain-containing protein 4; TAIR: AT5G50310.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q921I2|KLDC4_MOUSE Kelch domain-containing protein 4; TrEMBL-Plants: tr|A0A0S3RG42|A0A0S3RG42_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0234700 LjG1.1_chr1 55441395 55451089 -
3 domain predictions
1 GO term
LotjaGi1g1v0247400.1
n.a. Kelch repeat-containing protein; TAIR: AT1G22040.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040; TrEMBL-Plants: tr|I1KA24|I1KA24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0247400 LjG1.1_chr1 59456929 59459911 +
3 domain predictions
1 GO term
LotjaGi1g1v0247400.2
n.a. Kelch repeat-containing protein; TAIR: AT1G22040.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LM55|FBK8_ARATH F-box/kelch-repeat protein At1g22040; TrEMBL-Plants: tr|I1KA24|I1KA24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0247400 LjG1.1_chr1 59458021 59459409 +
3 domain predictions
1 GO term
LotjaGi1g1v0311900.1
n.a. Kelch repeat-containing protein; TAIR: AT2G21950.1 SKP1 interacting partner 6; Swiss-Prot: sp|Q9SJ04|SKIP6_ARATH F-box/kelch-repeat protein SKIP6; TrEMBL-Plants: tr|G7JAA2|G7JAA2_MEDTR SKP1 interacting partner 6; Found in the gene: LotjaGi1g1v0311900 LjG1.1_chr1 75602286 75609261 +
3 domain predictions
1 GO term
LotjaGi1g1v0394200.1
n.a. Kelch repeat-containing F-box family protein; TAIR: AT2G24540.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q8LAW2|AFR_ARATH F-box protein AFR; TrEMBL-Plants: tr|K7KTQ4|K7KTQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0394200 LjG1.1_chr1 87872524 87874917 +
3 domain predictions
1 GO term
LotjaGi1g1v0447400.1
n.a. Kelch-like protein; TAIR: AT5G01660.1 influenza virus NS1A-binding protein; Swiss-Prot: sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17; TrEMBL-Plants: tr|K7MTP9|K7MTP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0447400 LjG1.1_chr1 94626763 94638367 -
3 domain predictions
1 GO term
LotjaGi1g1v0521200.1
n.a. F-box family protein; TAIR: AT5G15710.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710; TrEMBL-Plants: tr|M9RSD2|M9RSD2_9FABA F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0521200 LjG1.1_chr1 104562292 104566398 -
3 domain predictions
1 GO term
LotjaGi1g1v0567400.1
n.a. F-box/kelch-repeat protein; TAIR: AT5G42350.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9FII2|FK117_ARATH F-box/kelch-repeat protein At5g42350; TrEMBL-Plants: tr|I1JST5|I1JST5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0567400 LjG1.1_chr1 110073104 110077287 +
3 domain predictions
1 GO term
LotjaGi1g1v0567400.2
n.a. F-box/kelch-repeat protein; TAIR: AT5G42350.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9FII2|FK117_ARATH F-box/kelch-repeat protein At5g42350; TrEMBL-Plants: tr|I1JST5|I1JST5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0567400 LjG1.1_chr1 110073978 110075723 +
3 domain predictions
1 GO term