Transcript — View — Lotus Base

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LotjaGi2g1v0325700.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0325700
Transcript ID	LotjaGi2g1v0325700.1
Lotus japonicus genome version	Gifu v1.2
Description	Dihydrofolate reductase-like protein; TAIR: AT4G24380.1 dihydrofolate reductase; Swiss-Prot: sp\|Q18169\|LOVG_CAEEL Esterase C25G4.2; TrEMBL-Plants: tr\|I3SQX9\|I3SQX9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0325700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:80107412..80109170) extracted from Lotus japonicus Gifu genome v1.2.

AATAAAACCCACAACGACACATTTGTGAAATCTAAAAGCAAGTTGATGGAAGATCATAGCTTGAATAAACCCAGAATCCT CTGCCTCCACGGTCACACGCGTAGTGGTGAATTCCTGAAGCGATTAGTCTTACAGTGGCCAGAATCTGTGATACAAAAAC TGGACCTCGTCTTTCTCAATGGCCCATTTCCAATGCTGGAACCAGACAGTTTTGAATGGTTCCAAGCCAATGAGGTTTGT TATAATAATAAGAGTGAATGGTTAAATTAGTCATGAAAGTGTGATACTGGCAAGTTCGTCATGCATATAGGAAATATCTC TGCGGTCACTAATTATGTAAAATGTGGATCAAGTTAGTCCTAGGTAACTTGACCGACATTTTTACACAGTCAGCATTGGG ACAAACTCGTGAGCGTCCAATATTTTCAGGGACAAATTTCATCATTCACTGGTAATAATAATGATGCTGATGTCATTCAT TGATGTATCTGTTTGTTTTGTTTGCTGCAGGATTTCACTGAGTACAGTAACTTTGAAGAATGCTTAGCATACATTGAAGA TTACATGGTGAAAAATGGCCCTTTTGATGGTTTTCTAGGACACTCTCAGGTATGGTTGGACTTGGATCACTATTGAACTT TTGGCATCTTTTTTTGTTGTTGTTATAATCACGTATGTCTGTCACTTATTAGGGAGTACACTGCCAGGAATGTAAGAACA GGTACGATGAAAGAAACCCATATATGTTTGCTATTATAAAATGTTGTTAATTACTTTTAATTTGATTGAACTAAGTGATC GATGATGAGTTTAGGGAGTAGCACTTGGGAAGGTAGACAAGATAAAGTTCGTGATTCTGTCATCAGCAGCTAAGCTTGGA GGGGAGAAGTTTGCAGCGCCTGAATTAGCTTCCAATGCATTTTCAAAACCAATCGAGTGTCCATCTCTTCATTTTATAGG TAGTTCTTAATTTTAACTTGCAAAGTTGCATTGTATCTCCCATTAACATACTAATTAATAATTCACTTTGTCCATGTTGT TATGTGATGAAGGGGGTGAGACTGATAAAGCGATGCCAGAGAGCATTGCTTTGCTGAAAGAATTCGTGGAGCCTGTTGTG ATTTATCACACACAAGGGCATACCGTCCCCCGGCTTGGTTAGTTGTAATTAATTTTCAAAACATGCTAGCAACACACTAA AAACTGACTCCAACATACTCATTGTGTTCTATGAGTTTATTGGAGTGTGTCAGTGTGTTGCTACGTGCTAGTCCTCTTGT TAATTATTCTATTCTATGAGTGTATGAGTGTGTTGGAGCGTGTACTAGTAAGAGTGTGTTCTATAGTACACAAGTAGTGA TAGAAGTCTGAGATTTTTGTTTGGTGCTTGGTTGTTCCAGATGATGATAAGAGTCTTGGAATTATGCTCGGTTTCATTGA CACCATTCAGGGGACACTTACTATGACTATGGACACCGCTTGGGCCGTGAAAGATTGCGCTCGGCCTGCCAATTTATATT TTTGGTCAAGCTGAGCAAATTGTTGGGCCTAAGTTGAGTGAATCAGCCCACCAGTGATAATACTATTATGAAACATATAG GGTATCCTTGAGCCCAAAAATAAGTATGAAAAAAAAACATGGAGCATCCATATTGCATATATGTTAAATCCATCCCTGTA TAATAATATCCACTTTCATCCTACAAGAACATGAAAACTGCTTATGGAACTAATGTGTAGATTGACAAATAACAATGCA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0325700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGATCATAGCTTGAATAAACCCAGAATCCTCTGCCTCCACGGTCACACGCGTAGTGGTGAATTCCTGAAGCGATT AGTCTTACAGTGGCCAGAATCTGTGATACAAAAACTGGACCTCGTCTTTCTCAATGGCCCATTTCCAATGCTGGAACCAG ACAGTTTTGAATGGTTCCAAGCCAATGAGGATTTCACTGAGTACAGTAACTTTGAAGAATGCTTAGCATACATTGAAGAT TACATGGTGAAAAATGGCCCTTTTGATGGTTTTCTAGGACACTCTCAGGGAGTAGCACTTGGGAAGGTAGACAAGATAAA GTTCGTGATTCTGTCATCAGCAGCTAAGCTTGGAGGGGAGAAGTTTGCAGCGCCTGAATTAGCTTCCAATGCATTTTCAA AACCAATCGAGTGTCCATCTCTTCATTTTATAGGGGGTGAGACTGATAAAGCGATGCCAGAGAGCATTGCTTTGCTGAAA GAATTCGTGGAGCCTGTTGTGATTTATCACACACAAGGGCATACCGTCCCCCGGCTTGATGATGATAAGAGTCTTGGAAT TATGCTCGGTTTCATTGACACCATTCAGGGGACACTTACTATGACTATGGACACCGCTTGGGCCGTGAAAGATTGCGCTC GGCCTGCCAATTTATATTTTTGGTCAAGCTGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0325700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDHSLNKPRILCLHGHTRSGEFLKRLVLQWPESVIQKLDLVFLNGPFPMLEPDSFEWFQANEDFTEYSNFEECLAYIED YMVKNGPFDGFLGHSQGVALGKVDKIKFVILSSAAKLGGEKFAAPELASNAFSKPIECPSLHFIGGETDKAMPESIALLK EFVEPVVIYHTQGHTVPRLDDDKSLGIMLGFIDTIQGTLTMTMDTAWAVKDCARPANLYFWSS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR22778 View details on PTHR22778 Search for proteins/transripts with this domain View external data on PTHR22778	2	196	195	8.9E-75	–
PANTHER	PTHR22778:SF47 View details on PTHR22778:SF47 Search for proteins/transripts with this domain View external data on PTHR22778:SF47	2	196	195	8.9E-75	–
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	5	195	191	1.1E-32	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03959 View details on PF03959 Search for proteins/transripts with this domain View external data on PF03959	7	182	176	2.6E-31	IPR005645 Show description in modal box View details on IPR005645 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53474 View details on SSF53474 Search for proteins/transripts with this domain View external data on SSF53474	7	177	171	1.52E-5	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0325700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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