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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0331100 |
| Transcript ID | LotjaGi2g1v0331100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G65640.1 beta HLH protein 93; Swiss-Prot: sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93; TrEMBL-Plants: tr|I1J4X0|I1J4X0_SOYBN BHLH transcription factor; Found in the gene: LotjaGi2g1v0331100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80679508..80682967) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTATTTCGGTGAAAAGGACATTAATTCACCTTGAGAGTGAGAGAGAGAAACAAAGAGATTCCATTTTAATCTGAGG CTATACCTCTAGGTGCTATTTCACTAGACTTTTCACTGTAATACATTCTGTAATCATGTGTTTGATCAAGAAAGAATGGA CATCTTCCAGCTTCTAAGCCAAATGATTCAATATCGGCTGGCCCAAAAGGCTAGTTGTTAAGCCAATGCCATAAGTGCGG ACCGGATGATTTAGTAAAGGAACATCCGTCTCACTCGGTCACATGAAGATCGATATACGACAAGTAAAGTAAGGCAGTCT AGAGTTGATCATGAGCTCGAAAACCCCTGCAATAGGACTTTCCTCATACCTCCAGAGGTAAACCATAACGCACCTTAAAT CTATAAATACATGTGTAGTCGCTCATTTACCTAACATTCATGCTATCATTCAAGCACATCTTTGAGTTTCTGTAAGACTC AAATATTCTCCCATTTCTCTCTGACTTAAGCGTTGGATTGTCTTTAATTTACGTTAAACTGAACATGAGAAATTGTAACT TTTCCTTTAGTACTTTGTGATAAGTGAAATCATGTTTGAGTTTTCACACACGTACAACCAAAAGTGTACTGCATAATATG ACTCTTTTGTTTTTAAACAAACTACTCCCATTTGGTTTTATTAAGCCTCTTCTGTTTGGTTCTTTCCACAATTCACATCC TCTTTAGACAAGAAGAGCAGAGAGAAAAAAACAGAACAGGGATGGAGCTTTCTCATCTTAGTTTTCTGGAGGAACTACTA GCTCCAAGAAAAGACACTTCTTGTTGGAATGCTTTGTCCACTGAGTTGAACGAGCCACTCCCTAGTGCTTGGAGCTTTGA CTCATTTGATGAGAATCAAGCTTTAGCTTCTCTATATCCTCCATTTGCTGCATTTTCAACACCATTAGACCAGAGATTTG AATGTCCTTATGGCAGTGATGCAGCTGCAGCATACCCATTTGTTGATGGTTTCACAATGCCAGAGCTTGATTCATCATAC ACCAGGAAAGAGGAGTCATCAGCACCACCTCCACTTTTGCCTCAAGAAGATAACCAGAGTTTGGATGAAGAGTTTGGGTT TCTGGGCAGTGATAATAACCAGGGTTTGGAGCAGATAAAAGATAGCTGCAAAATCGAGGAACAGGTTTCAGAGGTTCCAA TGGTGTTCAACATGGGTATGTGTGGAGAGAAAAAGGCTAAATCCAAAAAGCTAGAAGGACAGCCTTCTAAGAATCTCATG GCAGAGAGGAGGAGGAGAAAGCGTCTCAATGACCGGCTTTCCATGCTAAGGTCAATAGTTCCTAAGATCAGCAAGGTGAT TCTAAAGAAACATGTTTATGTTTTCTACCTCATTCTTTCTTATCTTTTCATATCCTTGTTATTAATGTCTTAATCAATGC AAATCAAAATACTTCACTAAAGTAGGTGATTTTTTCATGATTATGCATGACTAAGTGTTAGGATAAACTTCTTTTTTCTC CGAATCAGTTCTGACTAAGAACAATACTCACATAAGTTTCTTTCTAGAATTGATTCATACTTCAGAATTAATTGTAGAAG TATTTCCAAACATGGAGTAATACTTGCATTTATTGCTTGATTTGCTCTATAACCTTCAAGCTAACATGAGGTTATGACCT TTGACAGATGGACAGGACCTCCATTCTTGGAGACACCATTGATTACATGAAAGAGCTTCTTGAAAGGATTGGTAACCTGC AAGAAGAAGAAACGGAGGAGGGAAAGAATCAGATAGACCTCTTGGGAATTTCTAAGGAGCAAAAGCCAAATGAAGCAATG GTAAGAAATTCTCCCAAGGTAAGCTTTTGCTCTAGTTAGTCGATGCATCTTTGGATACACAGTGGAAAGTGGAAAACCAC GGTGAAGCTTAAATCACGGTCAACGGCCACAAAATTAACGGAAGTTAATTGTGATTTTGGCTAACTTAGTTTTACCGTTG TGTATCCAAATATGCATCAAGCTCAAACCCTTGAACTGATGCATAATCAGTCACCAAGTTCCTAAATTAGCACATTTTAC TGTAATGCACTTTTTCAGTTTGATGTTGAAAGAAAAGACCAAGACACGAGGATCAGCATCTGCTGTGCCACAAAGCCAGG GTTATTACTGTCAACAGTGAACACTTTAGAAGCATTAGGCCTTGAGATTCACCAATGTGTGATAAGCAGCTTCAGTGATT TTTCATTGCAAGCATCTTGCTCAGAGGTTTGTAGCCTATTTTAGTGGCCTTAATATTTGTTTGCATGCTTGAAATAATGA AATTGTACATGTTTTTTATTTCTTTTAACTTGTTGTGTTCTCATGGTTTTTCTAGGCTGCTGGGCAGAGGAATTGTATGA GCCCTGAAGAGATAAAGCAAGCACTGTTCAGAAATGCAGGCTATGGTGGGAGATGTGTCTAGGAGGAAGATGGAAAAGAG GGTGTAACAATTTGCATATGTTGAAAAAGAAGCAAGTTTTCCCCTCTTGTGTAATTCAAGGAATTAGGATGTTAAAGATC TTATGATGTTCCAAATAAGATGGCTTTTATTGATGCTTTCATTACAGTCTTAACCCTCCAAGCTTCTCTTTTCCCCTTGT GATAAAAAATCCTTTTTTCCAAGTAGCAAATTGAGTGTTTGACAATTTGTTTGAGAATCATGGTGAACAAAAGCTAGAGC TTATGTCCACCATGATTTTGGTTTCACGGTAGTTTTTAAATGAGTTTCCAAACATGCACTAAAATAAATGATAATGGAGA GTTGTTGCTAAACCCAAGTGGAATCAAACTGCTTTAAGTATATTCCTTAATATGCAGCTTCTTCAAAATTTAGTATTTCT GGACATCAATTAAACAAATAATAGTGTCTTCTGCATGCTGTTGACGTGGCCTAACAACAAGTGGATGAAGCAATTCTAAA ATGTTTCAGGTCTGTCAGATATCTAACACTAGTTGTTGGCTTGTTGCTAAATAATTTGCACAACAATCACTGATAAAGTG CTAGACTCTTACCATTTGACAGAACTAGTTTAATAGGACCACTGTTGTGTGGTAGATTAAAGAGAGAGAGATAATTGATA ACAGGATGAAAGCTCCGGAATCAAAGAGTCAACCAGGTTCAGTGTTCAAAGCCTTGTGCTCCATCTTGACAGAAGGAAAA GCTTGTTCAGGCATATAGACATCAGACATGGTTCTTTTAGGAGTGTTAGTGAATGCATTCTTCTTTTATTGAAAGGATGG AGCAGAAGAAGTAGCTTGAGAGTGATATGACCATGCCCTTGACTAGGAGGAGAAAATACTCATCAGCAAATCACATGTAA CGTTTTGTTCAGTTATTTGTGTTACAGATAAATGAGACACTCAAAATATCTTGAAATGAAATAGAAGGTCGTAATCTAAT TGATCTCAACTCAACATCCC
CDS sequence (LotjaGi2g1v0331100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTTCTCATCTTAGTTTTCTGGAGGAACTACTAGCTCCAAGAAAAGACACTTCTTGTTGGAATGCTTTGTCCAC TGAGTTGAACGAGCCACTCCCTAGTGCTTGGAGCTTTGACTCATTTGATGAGAATCAAGCTTTAGCTTCTCTATATCCTC CATTTGCTGCATTTTCAACACCATTAGACCAGAGATTTGAATGTCCTTATGGCAGTGATGCAGCTGCAGCATACCCATTT GTTGATGGTTTCACAATGCCAGAGCTTGATTCATCATACACCAGGAAAGAGGAGTCATCAGCACCACCTCCACTTTTGCC TCAAGAAGATAACCAGAGTTTGGATGAAGAGTTTGGGTTTCTGGGCAGTGATAATAACCAGGGTTTGGAGCAGATAAAAG ATAGCTGCAAAATCGAGGAACAGGTTTCAGAGGTTCCAATGGTGTTCAACATGGGTATGTGTGGAGAGAAAAAGGCTAAA TCCAAAAAGCTAGAAGGACAGCCTTCTAAGAATCTCATGGCAGAGAGGAGGAGGAGAAAGCGTCTCAATGACCGGCTTTC CATGCTAAGGTCAATAGTTCCTAAGATCAGCAAGATGGACAGGACCTCCATTCTTGGAGACACCATTGATTACATGAAAG AGCTTCTTGAAAGGATTGGTAACCTGCAAGAAGAAGAAACGGAGGAGGGAAAGAATCAGATAGACCTCTTGGGAATTTCT AAGGAGCAAAAGCCAAATGAAGCAATGGTAAGAAATTCTCCCAAGTTTGATGTTGAAAGAAAAGACCAAGACACGAGGAT CAGCATCTGCTGTGCCACAAAGCCAGGGTTATTACTGTCAACAGTGAACACTTTAGAAGCATTAGGCCTTGAGATTCACC AATGTGTGATAAGCAGCTTCAGTGATTTTTCATTGCAAGCATCTTGCTCAGAGGCTGCTGGGCAGAGGAATTGTATGAGC CCTGAAGAGATAAAGCAAGCACTGTTCAGAAATGCAGGCTATGGTGGGAGATGTGTCTAG
Protein sequence (LotjaGi2g1v0331100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSHLSFLEELLAPRKDTSCWNALSTELNEPLPSAWSFDSFDENQALASLYPPFAAFSTPLDQRFECPYGSDAAAAYPF VDGFTMPELDSSYTRKEESSAPPPLLPQEDNQSLDEEFGFLGSDNNQGLEQIKDSCKIEEQVSEVPMVFNMGMCGEKKAK SKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGNLQEEETEEGKNQIDLLGIS KEQKPNEAMVRNSPKFDVERKDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFSDFSLQASCSEAAGQRNCMS PEEIKQALFRNAGYGGRCV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 339 | 307 | 1.8E-148 | – | |
| PANTHER | 33 | 339 | 307 | 1.8E-148 | – | |
| MobiDBLite | 91 | 111 | 21 | - | – | |
| Gene3D | 155 | 216 | 62 | 1.6E-13 | ||
| ProSiteProfiles | 166 | 215 | 50 | 15.491 | ||
| SUPERFAMILY | 169 | 228 | 60 | 7.07E-15 | ||
| Pfam | 172 | 215 | 44 | 5.8E-10 | ||
| SMART | 172 | 221 | 50 | 3.1E-12 | ||
| CDD | 173 | 219 | 47 | 5.43762E-5 | ||
| Coils | 212 | 232 | 21 | - | – | |
| CDD | 265 | 306 | 42 | 3.27745E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0331100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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