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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0331200 |
| Transcript ID | LotjaGi2g1v0331200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DnaJ subfamily C member 2; TAIR: AT3G53440.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|O73700|CAC1D_CHICK Voltage-dependent L-type calcium channel subunit alpha-1D; TrEMBL-Plants: tr|A0A151TH61|A0A151TH61_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0331200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80684260..80686898) extracted from Lotus japonicus Gifu genome v1.2.
CATCAAACCCCGTCATGCGCCAATAGATATTCAAGTTCGAATTCACCCTTTTCCCTCTCTCTAAAAGAACTGTTGTAGTC TTCGGAGTGAACCCATCAAGTGTTTGTGAAAATGCCGAAGAGAAACTCCTCTGTCTGCAACCACCCCACCACCACCCCAC GACGGTCACCGAGGCTCAACCCCACCACTCCCGACCCCAAACCGTCAAAGAAGAAATCTCCGGCGGAATCGAGAATCTGC ACCGTTGGATTGAGACGATCTCCCCGGTTCATCAACAATGGGGTCGCTGAGGTTCCCTCTCTCAGACGATCTCCCAGGTT CTCCGATGACCAAACCCTAGAAAATGAGCAGAGAACCCCAGAGAAATTGAGCAAACCCGGTAACGCTTCTGGTGGTTCGG TGAAATCCGCGAGAGTGAAGAAGGGTTCTGTAGCAAAAAAGAAAGAGAACAGTGCTGTTGCTGATGAGGGGATTGCGGTT GAAGATGGAGGCAAAGGGAAAGGGAGAAATGGGGTCCTGGCAGGGAAGAGAAAGCGCGGTGGCGGCGGAGAAATTCATGA AGGGTGGACAAAGGAACAAGAATTGGCTTTGCAAAGGGCTTATTATTCTGCAAAGCCCAGCCCCCATTTCTGGAAGAACG TTTCGAAACTGGTAACTATCTTTCTTTGTATTTACATTTTAAAGGATGCACACTGAGTTACAGCACAAATAGCATAACAT GATAGATTATCTGAATTGCAAATCTTGAACTTTTGTCATGTTTGTTTTATCCTGTGTTGTGTTGCATGTCATGATTATTT TTGAAATCAAACATGAAATGAGTATCATTATGCTTAATCAAAGGCCATTACGCTTGTTCATTTTCTTTATTGTCCTTTTT GAATGTTCAAAATCAAATGCAATGCTAGAAGGGTCACCTGACCTGAGAATTTGACAACTTGTGTGTTCTCTGACAGCTGA GGATAGCAGTGAATAAGTGATTATATGAGCTTTTAGGCCAAAACTCTAGTAACTTGGAAATGCTGATAACTGTTTTTTGG ATGGAGTTGTTATTGACAAGTTTTCTGTATACATATATTTGCTTTAGCTTAAGGTAACCATTGCAAAGAATGTATGTAAT ATTATAATTTGTTGTTTGTTAATTGCTTGTTAAATAGGTGCAGATATTCTGTATATTGTTTTGTTCATTGAAACTCCCAT ACAAAACCTATTTCAGGTTCCTGGAAAGTCTCAACAAGATTGCTTTGATAGGATTCATCATGACTATATGACACCGCCTC AGTCTCAGCCTCGATCAAGGGCAAAGACAATGAATTCATCACCACTTCATAAGTTCTCAATATCAGCAAGTAAAGTGCTC AAGCCTATTGATAAGACAGCTAAAAGATCAAAATCTTTCAAACAGAAGAGCTTCATTACACAGAAGTCTATTGAGAAGCT GCTACAAAATCGTTTTAAAGTTGATAAAGACCGTGAAGGGGACATATTTTCTGTTCTTGAACCCAACATTGAAATTCCTA CTAATGCCTTGCAGTCTAGTCCAACATTTTCTACTCCGAAGCAGCTAAAAGAAAACCAAGGTTTACTGAATAGTTGCACG GGAACATCATCTTCAAGCCAGAAGAAGACCCTTTCAAGATTTAGTAACTCACGCGTTTCAGATGTTGTTAGTCCCCCAGT GCTAAAACAGGTAAAGAACAAGGTACAGCATGAGAAATACATCAATCAATTACGATGTAGGGAGGCTAGAAGAATGGCAG CCTCTAAACGGACAAAAAAGACCATAACTGGAAAAATGATGGGTGAAGGAAGCAGCATTCTGAAAAAGGATGCAGTTAAA GAAGCAAAAGTTGCCTTGGTATCTGAAGCTAAAGATGCTATCAATAAGTTTCAACAGTCACAAGTTAATTTCATGGGCGA TTCGTGTAATTCTGATGAAGACAATGATGAAGACTTTGGAGATGAATATGAAAGTCCGTAGGTTTTCCTCAACCACATTG AGTGAAACTGACGTGTATAGCAGTTAGATATAGTAGCCTAGTCAAAATCCAACTTTTCAAAAAACCCAGTTTTGTAGCAA TTTCCCCCAGTTAACAAAGTGAGCAATCCACTCACTTCTAGTTTCATACTTGCATTATCTTCTGGGAATAAGATTTTTCT AGATGTTGTGCATTTAGATTGGGCTTTATAGCAATATATCTCCTGAATTCTATCTGGGTAAGTAGCTTTAAATATAGATC ACAATGGGCAAGACCTGCTTCTGTTATATTTTAAAATTTTAATAATAGGCTCTATGTACGCGAGTTCACCACTTTGCGTA TTGCAAGCATTTAGTCCAAGACAGTTCATGAGTGAGTTGAAATATGACTTGTTTTAAAGCTTTCGTTCTTGTTTTGTGGT TGGCCCTTAGAGTCTTTATGTTGAAGATAAAAAAAGTAGATGGTCATTGGTCTGAAGTTTTGATCACTAGTTTTCTCACT AATGCAACATCCAAACAATTTATATGGGTTAGCTTGCCATTGTTGCTGTTGTTGCAAGTAAAATCAGATTCAGTACTTCT GTAGTTATCTTGGATTATCACTAAGTTTAGCATTTCAACAGGCATCAGCATGTAGCTTTCCCTTCCTGGTAATGAATGA
CDS sequence (LotjaGi2g1v0331200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAAGAGAAACTCCTCTGTCTGCAACCACCCCACCACCACCCCACGACGGTCACCGAGGCTCAACCCCACCACTCC CGACCCCAAACCGTCAAAGAAGAAATCTCCGGCGGAATCGAGAATCTGCACCGTTGGATTGAGACGATCTCCCCGGTTCA TCAACAATGGGGTCGCTGAGGTTCCCTCTCTCAGACGATCTCCCAGGTTCTCCGATGACCAAACCCTAGAAAATGAGCAG AGAACCCCAGAGAAATTGAGCAAACCCGGTAACGCTTCTGGTGGTTCGGTGAAATCCGCGAGAGTGAAGAAGGGTTCTGT AGCAAAAAAGAAAGAGAACAGTGCTGTTGCTGATGAGGGGATTGCGGTTGAAGATGGAGGCAAAGGGAAAGGGAGAAATG GGGTCCTGGCAGGGAAGAGAAAGCGCGGTGGCGGCGGAGAAATTCATGAAGGGTGGACAAAGGAACAAGAATTGGCTTTG CAAAGGGCTTATTATTCTGCAAAGCCCAGCCCCCATTTCTGGAAGAACGTTTCGAAACTGGTTCCTGGAAAGTCTCAACA AGATTGCTTTGATAGGATTCATCATGACTATATGACACCGCCTCAGTCTCAGCCTCGATCAAGGGCAAAGACAATGAATT CATCACCACTTCATAAGTTCTCAATATCAGCAAGTAAAGTGCTCAAGCCTATTGATAAGACAGCTAAAAGATCAAAATCT TTCAAACAGAAGAGCTTCATTACACAGAAGTCTATTGAGAAGCTGCTACAAAATCGTTTTAAAGTTGATAAAGACCGTGA AGGGGACATATTTTCTGTTCTTGAACCCAACATTGAAATTCCTACTAATGCCTTGCAGTCTAGTCCAACATTTTCTACTC CGAAGCAGCTAAAAGAAAACCAAGGTTTACTGAATAGTTGCACGGGAACATCATCTTCAAGCCAGAAGAAGACCCTTTCA AGATTTAGTAACTCACGCGTTTCAGATGTTGTTAGTCCCCCAGTGCTAAAACAGGTAAAGAACAAGGTACAGCATGAGAA ATACATCAATCAATTACGATGTAGGGAGGCTAGAAGAATGGCAGCCTCTAAACGGACAAAAAAGACCATAACTGGAAAAA TGATGGGTGAAGGAAGCAGCATTCTGAAAAAGGATGCAGTTAAAGAAGCAAAAGTTGCCTTGGTATCTGAAGCTAAAGAT GCTATCAATAAGTTTCAACAGTCACAAGTTAATTTCATGGGCGATTCGTGTAATTCTGATGAAGACAATGATGAAGACTT TGGAGATGAATATGAAAGTCCGTAG
Protein sequence (LotjaGi2g1v0331200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKRNSSVCNHPTTTPRRSPRLNPTTPDPKPSKKKSPAESRICTVGLRRSPRFINNGVAEVPSLRRSPRFSDDQTLENEQ RTPEKLSKPGNASGGSVKSARVKKGSVAKKKENSAVADEGIAVEDGGKGKGRNGVLAGKRKRGGGGEIHEGWTKEQELAL QRAYYSAKPSPHFWKNVSKLVPGKSQQDCFDRIHHDYMTPPQSQPRSRAKTMNSSPLHKFSISASKVLKPIDKTAKRSKS FKQKSFITQKSIEKLLQNRFKVDKDREGDIFSVLEPNIEIPTNALQSSPTFSTPKQLKENQGLLNSCTGTSSSSQKKTLS RFSNSRVSDVVSPPVLKQVKNKVQHEKYINQLRCREARRMAASKRTKKTITGKMMGEGSSILKKDAVKEAKVALVSEAKD AINKFQQSQVNFMGDSCNSDEDNDEDFGDEYESP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 149 | 149 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 66 | 84 | 19 | - | – | |
| PANTHER | 74 | 430 | 357 | 5.1E-114 | – | |
| PANTHER | 74 | 430 | 357 | 5.1E-114 | – | |
| MobiDBLite | 106 | 126 | 21 | - | – | |
| SUPERFAMILY | 145 | 192 | 48 | 1.11E-5 | ||
| Gene3D | 148 | 213 | 66 | 6.9E-8 | – | |
| CDD | 152 | 192 | 41 | 4.0707E-4 | ||
| MobiDBLite | 195 | 216 | 22 | - | – | |
| MobiDBLite | 200 | 216 | 17 | - | – | |
| MobiDBLite | 412 | 434 | 23 | - | – | |
| MobiDBLite | 418 | 434 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0331200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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