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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0334500 |
| Transcript ID | LotjaGi2g1v0334500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNARE associated Golgi protein; TAIR: AT4G17790.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580; TrEMBL-Plants: tr|A0A151QZ68|A0A151QZ68_CAJCA Putative membrane protein family; Found in the gene: LotjaGi2g1v0334500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81047836..81051065) extracted from Lotus japonicus Gifu genome v1.2.
CACACACACCACCAAACAGGAAAAAAGTGGAATATTCTCTTGTTTCTGAAAATCATTCGTTTCTCTCTTCTTCCTTCTCC CCCCCAAGATAAGGAAGACAAGAGAGAAAGCCATTTCCTCCACAACCAAACAGACATGGAAAACCAGGTTCAAACCAATG GTGCCGTCGTGCCTGAGCCTGCACCTGCACCTGCGCCGGCCAAGTTTCCCTTGAGCTATTGGGAAGCCGCGGTGGCTTCA ACGGTGGCGGTTGGCTTCCTCAGCAGCATTCTCTGTGTTTACCTCACCATGCCCGATTCCGATTACAGCTTCCTCAAGTT CCCTCACACCCTCGAAGATCTCAAACTCCTTAGGTAACGTTGCTTCCAACCACAACCTTTACCAATTACCCTGCACAAAC GTATTAACTTGTTGTTCCTCCATTTAATTTTATTGGTTAATCAATTTCATGATGATTAATTTGTTGCTTACGTGATTGTT TTTTCGGTGAAATGAAACTTCTGATTGGTATTATTTGTTGTTGTTCTGGTGAATGAATTGGAACCAGAACCATTGTTTTT GTCAGATAAGGAATAAAACCTGGATCTGAGAATGCAAATACATGTGAAATGTGGTGCAACAGGACAAATTTTGGAAAACC TTATCGCTTCAAAATTCTCTTTTGACCTCACTCTTCCAGATCTGAAAAGGTTATTTATGTGGGGGAGAGACCCAATTGCT TAAATGGAAAAGTGAAACTTAATTTTGTTATGCTGCATAGGTGCTAATCTGCTATTGTAGTTAGTTGGGAGTTATGCTTT GAGGCAATAAGATGGCATCTTTGCTTGCAACTTGCTAGCATATATTAGTTGGAGGCAACCTTGTTATTTTAGAATTGGTT TCAGCTCCATAATCAATTATGTTGGAAGCTAGGAATAGTAGCTTCTGAGTTGAACATAATCAATTTTGAGATTTTACAAT TGAATTTCACAACATTACCCTACAAAATCCACTTTCCTCATGAAGGTATCCAAGCATTTATCACATCATTTTCAACGCTC GTTTATTATGGTCAGTTGTACTAAAATCAATTATATCAAAATCATTTTGGACAATGATACTCCAAACACACTTATGTCAG TATTGTTATTGCTCCATTGTTCTTGACTTGCTACTTTATGCATAATGTACATAAGGCACATATTTTGCATCAAGGAATTA TTAGGCTTCAACAAAGGAGCTCATCATCCTTGTTACTCACCATAGAGTTCTCATGGCCATACGCCAATACCACAGCTCAT ATGCATATTTAGTTGGCCTTGGAAAGATAAGGGATGCCTGTATATGACTTAATGTTGTTAAATGGAGAAGAAAATAGCAT GACACAAAACCTTAAACTTCTGACCAGATCTAACAAAAATTTGATCTATTATGTTTTGGTACCGTCCATAGACAATACTT ATCATTTCAATGCATGGGTAAAATTTCTGCTTTCAATTTATGATTGTGCTTTATATAGAAAGGGAATGTATTTGATACTG AATGTAGAATGTGAAGTTGAAATTATGAATTCTGCAACACTTTATCTATCTTTTGTTCATTTTTGTAGAGATAACCTTGA GACTTATACAAGTGACTACACTGCTCAAGTCTTGGTGGGATACTGCGTGGTTTATATTTTCATGCAGACTTTCATGATTC CAGGGACTGTTTTCATGTCATTGCTTGCTGGAGCACTCTTTGGAGTCTTTAAAGGCGTGGCTCTGGTTGTATTCAATGCA ACCGCTGGAGCTTCTTCATGCTTCTTCCTGTCAAAAGTCGTTGGACGTCCTCTTCTCTCAACTCTCTGGCCAGACAAGTT GCTATTCTTCCAAAACCAGGTTTGTTTCAACTTCCATTCCCCTGTACATTGGGTTTAATCCAATCTGCACATGGAAATAT ATTTCTACTTTAAACTTGCAGGTGGCAAAAAGAAGGAAGGGTTTGTTGAACTACATGCTTTTCCTGAGGCTGACTCCAAC CCTGCCAAACACATTTATTAATTTTGCTTCACCGGTCGTAAACGTGCCCTATCATATTTTCTTCATTGCAACTGTTATTG GACTCATACCTGCTGCTTATGTCACTGTCAGGGTATGTGTCTGTCAATAATTTATTTTTTCGGTACTTTGGTTTTTTGCT AATTTTGAGATGTTAAAGGATACTCGAAATTTAAGTCAACCACATTCAATGTTATCCCATGTTACCAACAAAGTAATACT TTCAATTTGAAACTGAAATGTAGTTCACATTTATGTTTAGGTTCCTCTCCCCTTTGTTAGAATTCTCAACACCCTTCCCT TCTGAAAAGAGTCCTAAAGAATTACACATTTTGATTGTGGTTTTTTATCTTTTGAATTATTGAACTATATTAAACAGAAC ACAAGAATTTAAAATGCTATTGTTGTGCTTGTGTTAATGATTTCCTTGATTTCTCTTGCAGGCTGGGTTAGCTCTTGGAG AGTTAAAATCCGTTGGGGATCTCTATGATTTCAACTCAGTTGCTACTTTGTGCCTTATAGGTGTTGTTTCAATTACACCC ACACTTATAAGCAAGAAGGAGTCATAGCCTTTCAGAAGCCATGAATCTTGTGTATGAAGCCCTTGTTCTCCTGACACCTA ATACTGGTTCAGTTACTTCAGCATTTGTACAGACAGATCTCCACAATTTTAATGCGGTTCTCCGCTAATGATTTTATTGC GAAGTGCTGCAGAATCATGTCTTTGATGATGGGTTATATGCCAGTGGAAAGAAACGGCATTTGGAAGAATCAGTTATGTA CATTGTTCATAAGCTGCTATGTATGTATAGAAAAACATACGCTTATTGATTAGTAGTTACTTTGTCATGTTTTTTCCATG CACAATAATTTAGTTAAAATGTCTTCCTGGTTTTTCCTACCTAGTTTGTCCATCAGTTATGGCATGTTCATTGTACAATT GTCTGCTGGGTACAATATTATATCTATCGAATTAATTTAAATCAGCAGGTTTGATATGGATTCCAGGCATGTATCAGAAT AAAGGATGACATTAAAGAAAATTACTGAGTAAATTAAAGAATGAATGTAAAATGTGAATAATGTCACTGAGATTTTTATA AACTAAAACATGCCTCCCAACCTCTTTGTTGACAAATGGATGACAAGGATTACATCACTCCAATTCACTGTTAAATTAAA TTATTCGCCAGAATTAATTTATGATAAACA
CDS sequence (LotjaGi2g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACCAGGTTCAAACCAATGGTGCCGTCGTGCCTGAGCCTGCACCTGCACCTGCGCCGGCCAAGTTTCCCTTGAG CTATTGGGAAGCCGCGGTGGCTTCAACGGTGGCGGTTGGCTTCCTCAGCAGCATTCTCTGTGTTTACCTCACCATGCCCG ATTCCGATTACAGCTTCCTCAAGTTCCCTCACACCCTCGAAGATCTCAAACTCCTTAGAGATAACCTTGAGACTTATACA AGTGACTACACTGCTCAAGTCTTGGTGGGATACTGCGTGGTTTATATTTTCATGCAGACTTTCATGATTCCAGGGACTGT TTTCATGTCATTGCTTGCTGGAGCACTCTTTGGAGTCTTTAAAGGCGTGGCTCTGGTTGTATTCAATGCAACCGCTGGAG CTTCTTCATGCTTCTTCCTGTCAAAAGTCGTTGGACGTCCTCTTCTCTCAACTCTCTGGCCAGACAAGTTGCTATTCTTC CAAAACCAGGTGGCAAAAAGAAGGAAGGGTTTGTTGAACTACATGCTTTTCCTGAGGCTGACTCCAACCCTGCCAAACAC ATTTATTAATTTTGCTTCACCGGTCGTAAACGTGCCCTATCATATTTTCTTCATTGCAACTGTTATTGGACTCATACCTG CTGCTTATGTCACTGTCAGGGCTGGGTTAGCTCTTGGAGAGTTAAAATCCGTTGGGGATCTCTATGATTTCAACTCAGTT GCTACTTTGTGCCTTATAGGTGTTGTTTCAATTACACCCACACTTATAAGCAAGAAGGAGTCATAG
Protein sequence (LotjaGi2g1v0334500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENQVQTNGAVVPEPAPAPAPAKFPLSYWEAAVASTVAVGFLSSILCVYLTMPDSDYSFLKFPHTLEDLKLLRDNLETYT SDYTAQVLVGYCVVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALVVFNATAGASSCFFLSKVVGRPLLSTLWPDKLLFF QNQVAKRRKGLLNYMLFLRLTPTLPNTFINFASPVVNVPYHIFFIATVIGLIPAAYVTVRAGLALGELKSVGDLYDFNSV ATLCLIGVVSITPTLISKKES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 21 | 259 | 239 | 2.9E-118 | – | |
| PANTHER | 21 | 259 | 239 | 2.9E-118 | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 31 | 52 | 22 | - | – | |
| Phobius | 53 | 87 | 35 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 88 | 113 | 26 | - | – | |
| Pfam | 103 | 222 | 120 | 2.6E-17 | ||
| Phobius | 114 | 118 | 5 | - | – | |
| TMHMM | 119 | 141 | 23 | - | – | |
| Phobius | 119 | 140 | 22 | - | – | |
| Phobius | 141 | 175 | 35 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 176 | 196 | 21 | - | – | |
| Phobius | 197 | 201 | 5 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 202 | 223 | 22 | - | – | |
| Phobius | 224 | 234 | 11 | - | – | |
| Phobius | 235 | 256 | 22 | - | – | |
| TMHMM | 237 | 256 | 20 | - | – | |
| Phobius | 257 | 261 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0334500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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