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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0335600 |
| Transcript ID | LotjaGi2g1v0335600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein isoform 1; TAIR: AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|I3SDF9|I3SDF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0335600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81143016..81147561) extracted from Lotus japonicus Gifu genome v1.2.
CGTCACGCGGTTTCGTGCTACGAAATTTGAATGCCACGATGCTCGCACGTGCCTTCTATCCCTCTTATAAATCCTACATC ATTTTTTTCCTTCGCTGAAACATCGCTCCTCACATCACGTCTTTCTCCACCGACTGCAACTCATTCGCGGCGGTTTCCGG TGATCGGTGATTCGACCTAAAATCATCTTCCGATGTCGGTGAGTTCTCAAACTCCCTCTGTCTATCTGAATTCGCACATC TATTCTATAATTTTTCCCATCGTTAAGATTTCTGAAGATCTTGTTGCATGCGTATAAACCATTTCTATCAGTAGAAACTG CCGCTATAAACGAATTTTCCAAATGTTTTACAATATTTGTGACTGTTTCATTTGTGTATTTGGATTGCTAATGGTTATTT AACATTTGGTATTTTAGCTATCTAAAATTGCTAGCAAAATCATGCTTATAGTTCCTTTTCAGTGGTTATTTATTTGGGTA CTTGTGAAAATTTAAGGTTGAAGGTTGGTTGATTTGCCTTATGGGAAAATATGAACCCAGCACTTACAAATTTTTAAGTG AATAGAATATAAAATTATCTGAATCTGCCAACAATTTCTAGCTTATAGTTCACTTTTAGTGGTAATTTGGGTTCTTGTGA GAATTTAAGGCTTTGCAGTTTGGTAGACTTACCTTGTGGGAATTTATGAATTGGATAATGGTAGTGTCTGGACTCTGGAG TTGGTTCTCAACATCAGAAATGGCACACTGATATGAAATGATTGGCCATGTGAGAATACTGACTGTGCTGCAACCTTCTC TTTGAGTTTACGAGGATAGGATTGTACTTACATCACTTGGTAATCAGGACTAGAGGTCTAGAGGTGCATGGTATATGATA TAAGCATGATAAATTCATCATGGACACTGATTTTTCTTTTAGATCATGTTTGAGGGTTTCAGGAATTAGAATTAGTTGGA AATTACATGAAGTATTGAATGGTTATAAACTGGATTTTATAGATGTCTTCTGTTGAAATTATATAGCTTAGTCTGGGAAG ATGAAAACAGAGAAAAGAGATCAGAAACTGGATTTTATTGATGACTTCTGTCGAAATTATGTAGTTTAGTCTGGGAAGGA GAAAACAGAGAAAGAGACTTTAAATTTTAACATTATTCTTGTGTGTACAGTGATGTGTCAAATACGAAGCATAAACTTGA TTTATACTCGTAACTGAAAATAACTTCTCAGAGATCATGTAAGGTGCTCTACAATGTTCTAATACAATAAAGATATCAGG AGATATTTTCTTGATGTTCTAACAACTTCACTATAGCTTGTATCTGATGTTGAGATAAGCTTATGTGTATGATATGTATA CTAAATTCAAATAACATTGTTTAATAGGAATTAGGAAAGACATATACACTTTTGACTTATCCTTTTCGAAGGGTTGCTTA AATGTGTAATCTTTGCCTGATGATAAGCTTAAGTTTATACCTACTTTGTCATTTCTAGCTTTTTCTTTTGTTCTGCTCTT ATTACTTTTTTCTTCTTTAAAAAATTACGCTTCTATTTCTCAACATGGTTTTATGAATCTTTCAACTCAGTATCACCTGC TCTTATCTCTCTGTTTATATGAGAAGGCATAAAATATAAGCAGCAACCTGTTATAAGAAGCAATTGTAGCTGCACTTAAA ACATACTGACCAGAGATATGAGTACAGATGAGTGATGTGCATTGAATTTGTCATACAGTGACAATACAGAAATTATTGCA TATTCAGAGGGTGGGTACTCTGCAGTTAAGGACTTCTAATCGTTGCAATTTTTTTCCAGATAAAAACTGTTAAAGTCTGT AATGTTTCCTTGGGAGCAACTGAGCGAGACATAAAGGAGTTCTTTTCTTTTTCTGGTGATATTGAATATGTCGAACTGCA CAGGTCAGTTACCGTGCTTGGTTTTGTGTAATCCCGTCTTTAGAGTGCTTTCACTGTATATTTTGTTATGCAAATCATAA ATGTATTTATTGATCATTGATTCAGTCATGATGAGCGATCACAAATTGCTTATGTTACCTTCAAGGATTCGCAGGGAGCT GAGACTGCAGTACTGCTATCGGTAATCTGCTTACCATCATTAAAAATATATATCAATATTTTAATCAATTCACTCTTACA ACAAAAAGTCTTGTACTTAGTGATCCTTATCGAGAGAGCCATAGAATTATAGGTCTGTTTGCCATCATCCATAAGGTATT ACATTGGGTTGAAATATTTAACTTTTTGGAAAGATAATGCAGTACTAATGAGTTACCTGCTTGAAAAAATAATCTATCTT AGAATCATGGAGTTCTACATATGAAAACTCTTAATAAGAAGCCTTCCATTAGTCTTTTTGTTGATACTTATTTGATATGA AATTATGTATGTAGTAAATGTATTAATGATTAATGGTTACTGTGTTACATAATGCTGGATACTTCCCTTTTCTCCTCTTT AGTTTGGAATTTCTTCTAATCATGGAATTACTTAGAATTTTTTATTATCATTCAGTATGAGATTGAACATAAATGGAGGA GAGTTAGACAGATATTATCATAGAATCTTATTATCTTACTGATGCTTATCTGAGCTGGTGTTGCATGCTTTACTGGCCAA CTAGCTGCTGTCTTATTTCTTGATGGGGTTATCTATTTGTGGTAATTGGAAAGAATTGCTATCAGAAGCAAGGTCTGTTA GCTATAGTGTGGGCCTGTGGGGTGTTAGAACATGTGTCGAATTGTATCAGTTTATTTTATAACTCATTCTATTTCCCCGT GAACAAATTAGTTTAAGCTGCGATTTATAACTAAATATAACCTAGTTTCACATATGTCAGGGAGCAACAATAGTTGATAT GTCAGTTACAATAACTTTGGATCCAACTTACCAGCTTCCACCTGCTGCTTTGACATCATCTGTGAGCCTTCCTTAGCCCC TCATCTATTTATTATTGTACATAATAACTAGGCATACCCAGGCTGTTTTCGCCTTACAGCCATGTATGATGTAACTTTTT GCAGGTAAAAGAAAGTGAAGCTCCTGCTGGTGCTGAATCTGCTTTGCAGAAGGCAGAGGATGTGGTTTCCAGTATGCTAG CCAAGGGTTTCATCTTAGGGAAAGATGCTGTTCACAAAGCTAAGACTTTCGATGAGAAGCTTCAGTTATCTTCAACAGCA TCGGCAAAAGTTGCATCTTTTGACCAGAAAGTTGGGCTTAGTGAGAAAATTAGTGCTGGTGCTTCAGTTGTGAGTGATAA GGTTCGAGAAGTGGATCAAAAGTTTCAGGTTTCAGAGAAGACGAAATCAGCACTTTCTGCTGCTGAACAGACAGTCAGTA CTGCTGGTTCTGCCATAATGAAGAATCGATACATTCTTACTGGGGCCTCCTGGGTAACAGGTGCTTTTAGTAGGGTTACT AAGGCAGCTGGGGAAGTAGGTGAAAAGACCAAAGAGAAAGTAGAGAATGCAGAACAGCAGCACAAGCAAAACACTGGAGA TTCTGGGCCACCAAAAGCAGCAGCAGCAAGTGAGCACTAGTCTTCCAAGCCTGCTCCTGCTCAAGGTTTGATCCTTTGAT TTGTTTCTTATGTGTGTATATATCTTCTCCGAAACTCCAGCAAACTGTTTCCAGATGATCACCGACCCTTTTTTTAAGAT TAAAAGTGAATGTAGGACAAATGTGCAACTATTTGACTTTCTGTAGGAAGATAAACTAAATTTTATAGGTGCGAAATGAT GTGCTTCTCCTATTTTGTTTTTGCACAAGAGCACATTCTTTTAGTGTTCAAGGAATGTTCAACAACTTTGAAATCTCATG GGAAACTAACTCAAATGAAGAATGCTCATATGGATCTTTAAAAGTAGAAGAAATGATTCATTTAATGTAAAAAGTGCTTG ACACTTAAAGAATTAAAAAATCTTAAACGAAGTGAAAGCACATGAAACGTAAATGGAAGAAAAACCTGCTAAATTTCAAC AACTTTATTGACATGAACACATTTTTTGTCTTTGATCTTCAATCAACTGCTTCTAAGACTCAGTCAGATTAATCAATCTT GGAAGTGAATTTTCCTTCAAATCACGTATGATACGACAAAAAAAAAAACGTGACAACCTCTTGAACGCTTGAAAATAAGT TTCTTACAAATAGTCTTTTCGAGCTGTGCAGTGTGCACAACTCATGGTAATTTTACTATTTTCTTATAGACTTTGATTTT CATACAAGTGTATTCAAGACTTGGCCAATTTAAGGATTGAAAATGAGCCCTTCGAGTTGAACTTAACGTCATAGCATTCA TGACTTAGTCTAATAATGACCTTGCACAAATATCTTCGAGTTATACTCAGCATGATAGCACATAAGATAGTATCACAGTA ACATCTTGAGAACGAATCTCTTCGAATTGTACTTAACAATAAGTGGTTCATACCGCTACCGTCCTAGAGCCTTATATCTC TAGTTCAAGACACTAACTTTCACACTTAAACAAAATATCTAGTTGGTACCAACACTTGTATAAAAC
CDS sequence (LotjaGi2g1v0335600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATAAAAACTGTTAAAGTCTGTAATGTTTCCTTGGGAGCAACTGAGCGAGACATAAAGGAGTTCTTTTCTTTTTC TGGTGATATTGAATATGTCGAACTGCACAGTCATGATGAGCGATCACAAATTGCTTATGTTACCTTCAAGGATTCGCAGG GAGCTGAGACTGCAGTACTGCTATCGGGAGCAACAATAGTTGATATGTCAGTTACAATAACTTTGGATCCAACTTACCAG CTTCCACCTGCTGCTTTGACATCATCTGTAAAAGAAAGTGAAGCTCCTGCTGGTGCTGAATCTGCTTTGCAGAAGGCAGA GGATGTGGTTTCCAGTATGCTAGCCAAGGGTTTCATCTTAGGGAAAGATGCTGTTCACAAAGCTAAGACTTTCGATGAGA AGCTTCAGTTATCTTCAACAGCATCGGCAAAAGTTGCATCTTTTGACCAGAAAGTTGGGCTTAGTGAGAAAATTAGTGCT GGTGCTTCAGTTGTGAGTGATAAGGTTCGAGAAGTGGATCAAAAGTTTCAGGTTTCAGAGAAGACGAAATCAGCACTTTC TGCTGCTGAACAGACAGTCAGTACTGCTGGTTCTGCCATAATGAAGAATCGATACATTCTTACTGGGGCCTCCTGGGTAA CAGGTGCTTTTAGTAGGGTTACTAAGGCAGCTGGGGAAGTAGGTGAAAAGACCAAAGAGAAAGTAGAGAATGCAGAACAG CAGCACAAGCAAAACACTGGAGATTCTGGGCCACCAAAAGCAGCAGCAGCAAGTGAGCACTAG
Protein sequence (LotjaGi2g1v0335600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIKTVKVCNVSLGATERDIKEFFSFSGDIEYVELHSHDERSQIAYVTFKDSQGAETAVLLSGATIVDMSVTITLDPTYQ LPPAALTSSVKESEAPAGAESALQKAEDVVSSMLAKGFILGKDAVHKAKTFDEKLQLSSTASAKVASFDQKVGLSEKISA GASVVSDKVREVDQKFQVSEKTKSALSAAEQTVSTAGSAIMKNRYILTGASWVTGAFSRVTKAAGEVGEKTKEKVENAEQ QHKQNTGDSGPPKAAAASEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 249 | 249 | 5.6E-128 | – | |
| PANTHER | 1 | 249 | 249 | 5.6E-128 | – | |
| SUPERFAMILY | 3 | 76 | 74 | 4.34E-12 | ||
| ProSiteProfiles | 4 | 78 | 75 | 10.377 | ||
| Gene3D | 4 | 74 | 71 | 6.0E-10 | ||
| SMART | 5 | 74 | 70 | 3.1E-7 | ||
| Pfam | 8 | 66 | 59 | 8.2E-8 | ||
| MobiDBLite | 226 | 260 | 35 | - | – | |
| MobiDBLite | 226 | 241 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0335600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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