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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0339200 |
| Transcript ID | LotjaGi2g1v0339200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|A0A0R0H309|A0A0R0H309_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0339200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81611546..81614038) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAGGTCAATTCAATTCCCAATCTTGTTATTCACAGCGTCGTGCGCTCATCGCACCACCGCTTTCCTCCGGTCGCCGG CCACCACCGCCGCCGCCATGCCGTCGTCTGTTCGTTGAACTTGAGTACGTAACACTCTTCACCCTTTGCGATTTGCTAAG TTTGGATATGGATATAGATTTTTGTATGTAGCTGTGTTTGCGGTTTCATGTCTGAGAGAAGCTTCGATCTTCGTGGGAAT GTGGGGTTTTCATTGTTAGTGTTGGTCTTATGCTAAGTTGAAAGTGATTTTTAGAGATATGAAGGTTTTCTCATGTAGAG TTGGTTTGGATTTGGTTGTTTCTTGTATGAGATGTTATTAGGAAGAATTAGAGAGATAGAACCAAAAATTAGTGCAATTG GTGTGGATAAAATTTTGAATGTGAATGAATCAGTTTTAGAAGGGTAATGTTTTGTGTAGACCTCTAGATAGGTAAGAAGA GATAAGAGATAAGTGATTGATGCGAGCGGAAGAGTGATAGATAGAAAAAAAATGATGTTTGAAGGTGTATGCACTTGTTT GTTGGTATTCTTATCATTAATTTTTGAACAATGTTATGTGTGCGTGCGTGCGTGCCTATATATACCAATAACAATGCCTG TAATGTTTTTTTGTAGGAACTTGCTATAAACATGGAATCCCCCAAAAGGCATGAATCCAATGAGAATGAGGATCAGGACA TGATAAGTAACCTCCCTGACGTCATTATTGGTCGCATTCTTTCTCTTCTTCCTACCAAAGATGCAGTCTCCACAAGTCTT TTATCCAAGAGTTGGTTATACAAATGGACATTTATTACGCAGCTAGAATTTCAAGATAAAGAGTGTTCTTCATCCAAGAA AATAAGCAAAGATTTATTTGTGAGCTTTGTGTACAGGGTACTACTTCATCTGAATAGTTCAGGCATCCAGAGTTTCTCCC TTGATATGTCAGAGGATTATGAAGCTATTCACGTGGATGAGTGGATATCTGCTGTTGTAAGCCGGGGAGTCAAAATGCTT TGTGTCGATTCAGACCAGAAAGGAAACCTTTCCTCTCATTCCCTTATGAAATACAAGACCTTAGAGGAGCTAGTGCTATA TGCGTATGGTTGTGAGATTGAAGTTCCGACCTTTGCTATTTTTTCATCCCTCACAGTCCTGAACTTGACTGGAGCCATGC TTGTTGGTGACCCTTCTGATAAATCTGGAAAGGTTCACCTTAATTTCCCAGTTCTGAGAACCTATAAGACAAAAAGTTGC ACTTGGTTGTCAAGTGTGAAGTGTGTCACTTTAGAAGTACCTCTGCTTCAAGTAGTTTCTATACAGGTCTATAGGCCTTC AGACTCAGTTGATGATTATTCATATCCTACCATAAAGTTTCGTGCTTCACGTCTTAAAGAATTCAGTTATATTGGTTCTC CATTACCAGACCCCACTGTGTTTGATCTATCTGCAGCAAATGTTGCTTCTGCTGATATTTGTTTTGGTTTGTATAAGGAA GAAAGTTTGCAAGAAGTTATGGCTCTTTCTGTCGAGATTCTGAAGAAATTTCAAAATGTGGAATGTTTGAAGTTCCAGAA GTGGAGGAAGGTAATTTTCCTTATCTATCTCATGAAAAAATAAGAGAATGAAACTGAAAAAACGCACTAGTCACTGATGT TGCAAATAATTGCAAAGTTGTTTCATTCTCCATTCCAATGACTTCATTTTATTTAATTACCAAAAGCTCAACAATTTATT ATTGTTAAACAGGTGTTGCTAGCAAAAGATTCATTGACAGGTCTTCCTTCATTCAAAATGTTAAGTCGTTTGGAGCTAGG AGCAGTTGCTAGTGAAATTCTGTTGGCATTACTTCTAAGAACGCCATATCTGAAGACTCTTCTTTTTCAGGTAATTAGGT TTATAAATTGATTTGAACTGCTAGTCACTAAACTAAATCTTGTAGACATACTTCCAAATTATTTGCATTTCATGATTAGC GATGAGCGAGTTTTCCATTATGTCTTATTTGCAATTTGCCGAGCTATATAATAATACAGTTCCACTGCTGAATGGTGATA GGGACTACTCCAACCTGACCAAGAACTGTTGAATTATGGCCCTGTGCCTGAATGTTTTTCAACTACTCTTCAAGTGGTAA AGTTTAGGAGTTTTGATGGTTCTGAGCATCAGTTAAGTTTTGCTAAATTTGTGATGGAAAATGTTGTTGCCTTGAAGAGG ATGAGTTTCAGGCCTCACTGGAACCGCCCAAATATTTCGGAAGAAGTAAAAGAGAAGCTGTACTCATTTAAGAAATGTTG TAGTTTTATGAGTTTGAAATTCTCAACTTAGGTTAATGGAGGTTTACAAGGTACAGGGGTTTTTTTTTTTTGATAAGCAG GTACAGGATGAATACAACTTTATTCCATGCTTTAATGTAAATCATTTGTGCCCTTCGTGTGCCTTCCAGAGGACATGGAT TTGCTTATTTGGT
CDS sequence (LotjaGi2g1v0339200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCCCCAAAAGGCATGAATCCAATGAGAATGAGGATCAGGACATGATAAGTAACCTCCCTGACGTCATTATTGG TCGCATTCTTTCTCTTCTTCCTACCAAAGATGCAGTCTCCACAAGTCTTTTATCCAAGAGTTGGTTATACAAATGGACAT TTATTACGCAGCTAGAATTTCAAGATAAAGAGTGTTCTTCATCCAAGAAAATAAGCAAAGATTTATTTGTGAGCTTTGTG TACAGGGTACTACTTCATCTGAATAGTTCAGGCATCCAGAGTTTCTCCCTTGATATGTCAGAGGATTATGAAGCTATTCA CGTGGATGAGTGGATATCTGCTGTTGTAAGCCGGGGAGTCAAAATGCTTTGTGTCGATTCAGACCAGAAAGGAAACCTTT CCTCTCATTCCCTTATGAAATACAAGACCTTAGAGGAGCTAGTGCTATATGCGTATGGTTGTGAGATTGAAGTTCCGACC TTTGCTATTTTTTCATCCCTCACAGTCCTGAACTTGACTGGAGCCATGCTTGTTGGTGACCCTTCTGATAAATCTGGAAA GGTTCACCTTAATTTCCCAGTTCTGAGAACCTATAAGACAAAAAGTTGCACTTGGTTGTCAAGTGTGAAGTGTGTCACTT TAGAAGTACCTCTGCTTCAAGTAGTTTCTATACAGGTCTATAGGCCTTCAGACTCAGTTGATGATTATTCATATCCTACC ATAAAGTTTCGTGCTTCACGTCTTAAAGAATTCAGTTATATTGGTTCTCCATTACCAGACCCCACTGTGTTTGATCTATC TGCAGCAAATGTTGCTTCTGCTGATATTTGTTTTGGTTTGTATAAGGAAGAAAGTTTGCAAGAAGTTATGGCTCTTTCTG TCGAGATTCTGAAGAAATTTCAAAATGTGGAATGTTTGAAGTTCCAGAAGTGGAGGAAGGTGTTGCTAGCAAAAGATTCA TTGACAGGTCTTCCTTCATTCAAAATGTTAAGTCGTTTGGAGCTAGGAGCAGTTGCTAGTGAAATTCTGTTGGCATTACT TCTAAGAACGCCATATCTGAAGACTCTTCTTTTTCAGGTAATTAGGTTTATAAATTGA
Protein sequence (LotjaGi2g1v0339200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPKRHESNENEDQDMISNLPDVIIGRILSLLPTKDAVSTSLLSKSWLYKWTFITQLEFQDKECSSSKKISKDLFVSFV YRVLLHLNSSGIQSFSLDMSEDYEAIHVDEWISAVVSRGVKMLCVDSDQKGNLSSHSLMKYKTLEELVLYAYGCEIEVPT FAIFSSLTVLNLTGAMLVGDPSDKSGKVHLNFPVLRTYKTKSCTWLSSVKCVTLEVPLLQVVSIQVYRPSDSVDDYSYPT IKFRASRLKEFSYIGSPLPDPTVFDLSAANVASADICFGLYKEESLQEVMALSVEILKKFQNVECLKFQKWRKVLLAKDS LTGLPSFKMLSRLELGAVASEILLALLLRTPYLKTLLFQVIRFIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 361 | 351 | 5.6E-72 | – | |
| PANTHER | 11 | 361 | 351 | 5.6E-72 | – | |
| Gene3D | 11 | 262 | 252 | 3.6E-14 | ||
| ProSiteProfiles | 15 | 48 | 34 | 8.544 | ||
| SUPERFAMILY | 15 | 90 | 76 | 1.44E-9 | ||
| Pfam | 18 | 50 | 33 | 5.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0339200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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