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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0339600 |
| Transcript ID | LotjaGi2g1v0339600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit 13; TAIR: AT4G19006.2 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8RWF0|PS13A_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog A; TrEMBL-Plants: tr|I3SEP3|I3SEP3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0339600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81655543..81659125) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGCTCTGCAATACTTGGATTCGCTTCGCAGCGCGCACCCGGAGCTTGACGATTGGTACAATTCTCTTGCGGATCT GTACCAGAAGAAGCTCTGGCATCAGCTCACTCTCAAGCTCGAGCAGTTTCTCGCTCATGCTGTTTTCCAGGTCTCACTCC TCATCAACACTCCTTTCCTCTTGCTCTTTAGGGTTCCAATTTGCTCTGTAGCTTCGATTCCTTGTTTGCGAGATTTAGGG TTTTAGTTTTGATGCTGTGAACTCAATTTCGGAGTGTTAGGGTTTTTTTCTTGTTGTGATTGGAACTGGGAGAAATAAAA TGGGGGTTTTCTTTGAATGGGTTGGGGGTTTTGGTTTGGGATCTGAGAATTTTAGGTGGGGATTTGATAAATTGAAATAT TCGAGTTTTTGGTGATGTAGAATTAGGGTTTTGTTAAAAATTGGGTTTCTGGGCTTTCTAATTTGAAAGTCAATTCTTTT TGCTGTGAGGGTGTTGATGGGTCAGTGAGGGTTGTTTATTTTGCTTCCTTGTTTGTCAAAGTGAATTTGTTTTTTTTTGG GGCTTAGTTTTAGTTCTACTGAATGGAATTGTTTGCCGGAATTGTAGTGTTTGATTATGCTGAAAGCTGCACTTATATGG TAACCCGATTGGAATATGTGATTGATAAGTCACATACCATTTATGATTAGAGTGAATATAGCATAGGTAGTGTGGAAGAA AACAATGTAGATGTTTCATTTTAACAAGATCAAGGTAGTCTTGTCAAATTTTGATGAATGGCTCAAGTAATTAAGTGTGT CATAAATATGTTTTGATAATGGAGTTTTGTGAGGTTTAGATGTGGGATTCCCCCCATTTTCTATGTGGATCTTTGCCTTG AATGTTATTCCTTAGCCTGTCAATTTTTTTAACACATTGCTGGAAGCAGCTAGATCGATCTGATTAAGATCACTCGTATT TTCATTCAATAAAACATTGTTAAATGTCTCAAATCAATTGCAAATTTCAAACGGAGGTCTTTGTTAACTTTGGGAATCAC CGTTCAATCTTATTTTAGAATACATTTGAAATTAGATTCCATAAGAGATGTTACATGAAATATTCTTTCCATGTTCTCAA TGGACTCTAGTAGCAAGACACGTAGCATGTCAGAACTTGTGCCAAACTTAAAGTACTATCTTATTATTATTTTTTTCTAT GTTATGATTGAATTACTAATGTTGCTAACTTAACTGTTATGTACCATGATGTCACCAATGATGTTGCACAAATTGTGCTT ATAATTTCTTTATGCTTCTAATATCAACTTCCATTACAAATTTATGCTCTGTGGTGAATGTTCTTTTCGTGCTCCATTAC TTATTTGTTTGACCATTATTCTTGCTGTAAATTTTCAGGCTGGCGATGCTTTGATTCAGCTGTACCACAATTTCATCACA GACTTTGAGACTAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTGATGGTTTCTCGGCAGTATTCTGAGAAAGAAGC TGCCGTTGGTTATCTTGATGGGATCATTGAGAAACTGCAAGCCACTAAAGAACAGCGCATAGAAGAACCTATTCTATACA TTAAGATGCAAATAGCCATATTTAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAGCTTCTGGAAGATGGAAAGAGT ACACTAGACAGCATGACAGATATCGATCCAACTGTGTATGCTAGCTATTACTGGGTATCTTCTCAGTTTCATAAATCCCG CCAGGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTCTATTTGGCATACACAGCAGTGGAATCTCTCTCCGATTCATTCA AGCTGGTATGTTATCTCTCATCGGATTTCAAATGTTTGTTCATTGATTTCTTTTTGTTGCCTCAAATTATTTCTATTTGC TTCCACTCCACTCTTGTTACAGTTACTCAACTTATTCTATGATTTTTAAGTATGGTTGTGTTGTGAAGGGAGATGATCTG ATCTTCAGTCCCATGGCAGTTGAACTCCCATTTTTATGAGCCTCTAACTTTTGTTATCCTGGATTTTAGAACTGGGTGGG TTCTTTTATTGAGGAAATTAAGGGGATGTTGTAGTTAAATTATATAGTAGTATTGAGTTGGAAAATTTGTCATAATGTTG ATCAAGACTAAGTAATGTTTCTAACTTAGCTTCTTCATATATCATATCATCTAATACAAAGACTAAATTATTTCTTTTAT CATTGTTATACTATCATTACACTACGAAGATATTTATCTTAAACTAAAACAGAAGAGTTTGAAAATAGGTTGATAATTTT ACTTTTGGTAGAATAGTGTTAAGATTCTAGAAGCTAAAGAGTTTAGAGAGAAAAAGGGAAAACATAATGCATTGATTACT GAAGAGTCTAGGTACAAGAATATATATATAGAGGCTCGATATCCAGTTGAGCTCTTAAAAATCCAAACAGTATAACTAAC TAGTTACAGCTATGATTAGCCAACTAGCAGAAACCTATGGGTGCATTCAGGAGCACACGAGTGTAGCATTATTCAGCACT TAATAAATGGAAACTAAATCCGGGTTTTATGATTTCATTTAGTTGCACTTCTTTCCTCTTTAAGGAGAGGTTAAAGGAAA GATCATAGTAGTTTATCCCATCTGTGGGTTTTTTTCTATTTATCTTTAGACCTGATATTAGTTAATGCTCCTATTTTTCT TGATTTGTTAGGATTTGGCTTTTGATTTGTCCCTTTCTGCTCTGCTGGGGGATAACATCTACAACTTTGGAGAGCTACTT GCCCATCCAATAGTGAGTACACATCAAATTTTTTGGATTGCCTGTTCAATTTTTTTTACCTCACTCTTTTTTCTTTTAAT ATACTATGTTGATTGACATGATCTATAATGCTCTCTGACAGATTAAGAGCCTTCTGGGGACAAAGGTGGAGTGGCTGTAC TATATTTTGCAGGCATTCAATTCTGGTGATTTGGTTCGATATCAAGAACTATGTCGGGTTCATAATGCTGCTTTAAGGGC TCAACCAGCACTAGTTCAAAATGAACAGAGGTTATTGGAAAAGATCAACATTCTCTGCCTGATGGAGATTATATTCAGGT ATGTGCATCCATTAGATTGTAAAATTATAAATTCGGGAGATGAATTTCCAACTTGAGCTGATTGTGGTTTGCTTGCAGTC GGCCTTCGGAAGATCGAACTATTCCCCTGGCTGTAATTGCAGAGCGTACAAAACTTTCTATAGAGGATGTGGAGCATCTT CTTATGAAGAGCCTATCTGTAAGTTACTGAGAAAAAAGTTACCTTCAAAGTTTTCATGATTTTCTATCATAACCATCTTT AAGTAATACACTTCAAAACCTATGGGTTTGGGCAACATAAATTATTCTATTCAAATTATATTTAGTTATTCTTGATGAAC GTGCTTCTCGTTTGTCAATTTGTTCATATATTATTTTCTAGTAAGCATTGATCTCCGATGACCTTTAATCATGAATTGTA AGCATGCATTCTATTTTGCTGTGTGTGCACTACATCCTAAATGATGTTCCTTGCAACTCTTGA
CDS sequence (LotjaGi2g1v0339600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTCTGCAATACTTGGATTCGCTTCGCAGCGCGCACCCGGAGCTTGACGATTGGTACAATTCTCTTGCGGATCT GTACCAGAAGAAGCTCTGGCATCAGCTCACTCTCAAGCTCGAGCAGTTTCTCGCTCATGCTGTTTTCCAGGCTGGCGATG CTTTGATTCAGCTGTACCACAATTTCATCACAGACTTTGAGACTAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTG ATGGTTTCTCGGCAGTATTCTGAGAAAGAAGCTGCCGTTGGTTATCTTGATGGGATCATTGAGAAACTGCAAGCCACTAA AGAACAGCGCATAGAAGAACCTATTCTATACATTAAGATGCAAATAGCCATATTTAAGCTTGAGCAAGGTGATCAAAAGG AATGCAAGAAGCTTCTGGAAGATGGAAAGAGTACACTAGACAGCATGACAGATATCGATCCAACTGTGTATGCTAGCTAT TACTGGGTATCTTCTCAGTTTCATAAATCCCGCCAGGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTCTATTTGGCATA CACAGCAGTGGAATCTCTCTCCGATTCATTCAAGCTGGATTTGGCTTTTGATTTGTCCCTTTCTGCTCTGCTGGGGGATA ACATCTACAACTTTGGAGAGCTACTTGCCCATCCAATAATTAAGAGCCTTCTGGGGACAAAGGTGGAGTGGCTGTACTAT ATTTTGCAGGCATTCAATTCTGGTGATTTGGTTCGATATCAAGAACTATGTCGGGTTCATAATGCTGCTTTAAGGGCTCA ACCAGCACTAGTTCAAAATGAACAGAGGTTATTGGAAAAGATCAACATTCTCTGCCTGATGGAGATTATATTCAGTCGGC CTTCGGAAGATCGAACTATTCCCCTGGCTGTAATTGCAGAGCGTACAAAACTTTCTATAGAGGATGTGGAGCATCTTCTT ATGAAGAGCCTATCTGTAAGTTACTGA
Protein sequence (LotjaGi2g1v0339600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALQYLDSLRSAHPELDDWYNSLADLYQKKLWHQLTLKLEQFLAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAV MVSRQYSEKEAAVGYLDGIIEKLQATKEQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKSTLDSMTDIDPTVYASY YWVSSQFHKSRQEFAEFYKSALLYLAYTAVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYY ILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQRLLEKINILCLMEIIFSRPSEDRTIPLAVIAERTKLSIEDVEHLL MKSLSVSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 327 | 327 | 1.3E-202 | – | |
| PANTHER | 1 | 327 | 327 | 1.3E-202 | ||
| Gene3D | 170 | 327 | 158 | 5.5E-47 | – | |
| ProSiteProfiles | 174 | 328 | 155 | 21.622 | ||
| Pfam | 238 | 322 | 85 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0339600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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