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LotjaGi2g1v0340600.1

Overview

Field Value
Gene ID LotjaGi2g1v0340600
Transcript ID LotjaGi2g1v0340600.1
Lotus japonicus genome version Gifu v1.2
Description ERD (Early-responsive to dehydration stress) family protein; TAIR: AT1G32090.1 early-responsive to dehydration stress protein (ERD4); Swiss-Prot: sp|Q9FVQ5|CSCL1_ARATH CSC1-like protein At1g32090; TrEMBL-Plants: tr|G7K880|G7K880_MEDTR ERD (Early-responsive to dehydration stress) family protein; Found in the gene: LotjaGi2g1v0340600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81751774..81758822) extracted from Lotus japonicus Gifu genome v1.2.

GCAGTAGGTAGCATTATCCAAGCACATGAAACTCCATAACAACCCAAACTAGAAGATGCCACATATTCAAAACCACCTAG GCTGCTTTTGTTCTTTTCCTCCATCAAACATCACATGCAAACCCCATTGTTCCCTCTTCTTGCTAGTTGTTAGCTAGTGC CCTCTTACTCATCACCATACTCAAACAGAAAAAAAAAAACCCAAGTCCAATATTTTAAGGCTAGCCATATTTTAATCAAG TTCACTAATTTAGTCTCAGCAAATTCTGAACCCCCAACAAAGCACCCACCTTTGTCAACCTGCAATAAAGAATTGGATTT CAGTTATCCTTTGCCTCCTCCATTCCCCATTCCTCACCATATCTTCTCTCTCTCTGGTTTTGGTTTTTGGCAATAATGGC TACCTTGGCCGACATTGGGGTCTCTGCTGCAATCAACATTCTCTCTGCCTTTGCTTTCTTGCTAGCCTTTGCTCTTCTCA GAATCCAACCCATCAATGACAGGGTCTACTTTCCCAAATGGTACATCAATGGAGAAAGAACCAGCCCAAGGAGCACTGGG AATTTTGTAGGGAAATTTGTCAACCTCAATTTCAAGACTTACCTTACTTTCCTCAACTGGATGCCACAGGCTCTGAGAAT GAGTGAGAATGAGATTATCAATCATGCTGGTCTTGACTCTGCTGTTTTCCTCAGAATCTACACTCTTGGGTAACTCTCCT TTTAGCCCTTGCATTGTTCTTTGCATAAAGTTTCAATTTTTCTCCATGCTTCTCACACTGTGTGACTCAATTCTGGCTAT TTTCAGCAAACTCAAAATGGGTTCTGAAAATTCTTCATTTTCTTTTAAATTTTATGATAAAGGTTTCATTTTTATGTGCA TTGCTTAGTTTTTCTCTCTCTACTCAATTGAAATTAAAACAAAAAGGAATTTAGCTACTGTCTTGTTTCTAGGAATTGTG ATTTTGTTTGTTGTATAATTGATGTGATTCATTGTTTTGAGGTGATAATGTTTGGAAAATTGTTTTAGAACAGGAATAAT GTCTAGTTATCCTTCTGAAAATATTAAGCATTTGGTTCTTGTGTGCTTTTGATTATCAGAGAGTTTTGGAATCATGCCGT GTGGTTTTCAACTTTCTTTTTGCTGATGCCAGCTTTTCTCAAAAGACCTTTCGTGGAAGCTTCAACTTTGGAGGGTTTAT AGCCCATGTTGCTACTTTTTCACTTTCCTTCAAGCTCCCTCTATTTCTGTTCTCTGCATAAGTTGGCTTTTCTGTGTTAC GTGTGAGGGATGCAAATTTTATGTATATCATATTAAGTTATTAGTTTAACAACATATGAAGTTGCACATGGCATGACAGT GCATTTGAGATAATGAAAATTAAGAGAAGAATCTTATTTTCCTATTAAACGTTAATGTTGAAATTATTTTACTGTGTTTT CAGCACTAGACTCATTTTCAATTTTTCTCTTCGCCTTTCAGGTTAAAGATTTTTGTTCCGGTGACAGTTGTGGCACTCCT CATTCTTATTCCAGTCAATGTATCAAGTGGGGCATTATTCTTCCTAAAAAGAGATTTGGTCGTGAGTGATATTGATAAAC TCTCAATATCAAATGTTCCGTCCAAATCTTCAAGGTACAAATACAATCATGGTTACCTCCAACTCTAAAAAGTGGAAATA AATTGGTTAATAATTTGGAATATTTTCTTTTTCTATTTGAAATAATGCCTCAATTAAAGTCCAAGTTGGTGCTTCCTTCT CTTGGCATGGACTGTTCATGTCACCCATGGATTAGAACACTATTAGGAAAAATCTAATTGAAGCCTTTTAATGTGTGAGA ACATAATTAGGAACGGATTAAGTATTAATTTTGTTTCTTCAAACAGCTCACCTGCAATCATTTAGTACTGAACCAAAATT TATACAGTAAGTTTTAGGAATATTGGTATGTCACATTGTCACTGTCATGGCACCTAAACCTTCACTTACAAGGTTTAATA GAAAAAAATCAATCCATTCCTTGGCATTTAATATTAACTATTTGCCATTTTTTTCTTCATCTCTATCTCTCTCTCTTGCT TTAACTAAATCGCATTATGTTTATTTTTCATGTCTATGTTGATCTACATTGATTTTCTCATGATATTATGTCTGTGTTAC CACCTCTCCCGGTTATCTAACAGCTGTAATTGTAAATTTCAGATTTTTTGTTCACATAGGATTGGAATACATGTTCACAC TATGGATTTGTTTTCTACTTTACAAGGAGTATGACAATATAGCAATGATGAGATTGCATTTCTTGGCTTCACAGCGCAGG CGTGTGGAGCAATTCACAGTGAGTTGAAAGTTCTAATTCACTTTTACTAGAGGAGGATAAACTTAAGAATGTTACTTTTT GCAAGAAAATATCTCCTAGAGCTTCTCACCATTTTCTCAATTGTTGTGAGTTTTATGTTTTAGTGAGTGGGTGTATTATG GAGTAAGGCCTGAATTGTTCTTTTAATCAGTCTTTTTTTGCTCTTCGTGTCTTTGCAAACAAATCATTGAGCCTATTTGC ATAATATCAGTGTTGCATGGAAGTCAAGTTTTCATTCTCACACTGTAAATAAATTAAATCTCATTTTCCTAGTTCCTTCT TTTGGGCCCATAATAGTAAGATATTGGAGAAGACATAATTCTAGCTAGCACTTCTAGTTCAGGACTGGCTTTATGTGTTT CTCACTTGTTGTCTTTAAGTCTTCTGCACCTTCTTTATAAGGAGTCAATTTTCAATTTTTTCCTTTCTAGTTTTGAACCC TGTTCTTGGTACCTGAGTAATAAGTTGCCTTGGAGCTCCTATGGAGAAGTAAGGTGTGGCAGAAGGAGTGATGATTAAAC ATTTTGTAATCTTCTAGCAAAGATAACGGTTCTATACTAATTTTCGGTGTGCCCCTCTTATAAATGTTGATTTCCCGTCT ATATGCTTGCTGCAGGTAGTCGTCAGGAGTGTCCCTCATATTTCTGGTCACTCAGTATCAGATTCCGTCGAGAGCTTCTT TCAAACAAACCACCCAAATCATTATATTGGACACCAGGTAATATATTTCACTATATTCTTGCTTGGGGAAATTTATTAAA GATAAACTAGTTAGGGAATATTTTTAGAGTATAATATTTATGCATGATGTTAAAGTTCACGTATTTTAGTTAAGCAAATA TTATTTGCATTATATCATATTCACATTGTTACCTTCAATTTTTAGGCTGTCTACAATGCAAACAAATTTGCGAAGTTGGT AAGAAGACGAGATAGACTTCAAAATTGGTTGGACTATTACCAGCTTAAGTTTCAGAGGCATCCTGACAAGAGGCCAACTA TCAACGTATGTAATTGCGATGAATGCAATTTTAGATAACAAGTATACTATGATAACCACAGTGATAATCTATTTGGACCC AGAATCTGAAATTGTTATCTATTCTCTCTTTCAGACAGGTGTTTTAGGGCTTTGGGGTAGGAAAGTTGATGCTATTGAGT ACTACAGCCATACAATTAAGGAGCTTGATAAAGTCGTAAGTCATTTTTATTTCTCTTTCCTGCAATATTTTAACTCTTCA CCACTATTACCTTCATTGGTTTTAAATTTTTGAAAGGTAGTCCTTGTGCTAAATATGCACACTTCCCTATTTATGTTGGG GTACTTTGATATAGCTAAACCGCGTATGTGATGCAGATGACATTGGAGCGCCAGAGAATTATAAAAGATCCCAAATGCAT TTTGCCAGTTGCTTTTCTTTCATTCAGTTCTCGTTGGGGAGCATCAGTTTGTGCACAAACCCAACAAAGCAAAAATCCTA CACTCTGGCTCACTGATTGGGCTCCAGAGCCCCGTGATATATACTGGAGGAACCTGGCCATACCATTTGTTTCTTTAAGC ATCCGAAAACTTGTTATATCACTATCAGTGTTTGCCTTGGTATTCTTCTACATGATTCCCATTGCTTTTGTGCAATCCCT TGCAAATTTGGAGGGTCTTGAAAGAGTTGCTCCTTTCCTCAGACCAGTAATAGAATTGTAAGTCAACATAAATTGAGCCT AGTATGGAGAGTTAATTACTCTAGTATTGGATGGGGTTGGACTTAACTAATTTAATCTCAGGCTTGGAGTTAACTACATT TGTCTCATAGTTAAACTCAGAAAGTTTTTTTTTTGGCTTTTGGCAGGAAATTCATCAAGTCCTTTCTACAAGGTTTTCTT CCTGGTTTGGCCCTTAAAATATTCTTATATATTCTACCGGCAGTTCTGATGATCATGTCGAAAATTGAGGGACATATTGC TAAGTCAACACTTGAGCGGAAGACAGCAGCAAAATATTATTACTTTATGCTGGTGAATGTTTTCTTGGGAAGTATAGTGA CCGGGACTGCATTTGAGCAACTGCATTCTTTCCTCCACCAGTCACCTACACAGTATGCCTTCTTTACAGCTATTCCTTGA CTATATCTGATTGCCCGTGCTAGAAATGTTTATCCTAGATTCTACAACTTCTCGATAGGCATCAAGCGAGGTTGCTTTTA TTTTTATTGCTTTTCCTGGACTGTTTTTGAAATCCAGTCATGTATATTGTTTAATTGATAAAAAGAGAAAAAAAGAAAAG AGAAAATGGGAAGCATAGGAAGAAACATGCAAGCCTGAGTATGATGCGGAATAGTACATGCAAAATATTATGGTAACTCC ATGTCCATAAGTGAACCTCTGAATAGTTCGTGTTTCGACCTTCAGATATACTTTGAAGTGCTAGTATATAAATAAAACTA ATTTAACATCCATTTGTACTGTAAAAAATACATTCAACCAATCAAGACTAACCACTAAAGATGTCTTCCTCCATATGATA ACCACAAAAATGTTATATCTTTTTTTAATTTACTGGGCAGCCAATCTTGAATTATAAGTGGTTCTGAAGGCAAGCGCGAC TCGCTAGCTATTTAATTGTATATGGACAAGCAATTGATCCTATGCATGTTGATAGATTTTCTCTATTTCATGTCAACCTT GCACTTCCATATATCTAGTGTCTATAAATACCATAATCTTTTGCAGCAACTCTATTGAATCTTTGACCATATTTAATATT TCTTTCCTGTTTTTTCACATTCCCTAAGGATTTTCTCCTGTCCTTAATAATTAACCCATACATGTGCTCTGCACGCAACT GATCTTGCGAATTATACTGTTGATTATAGGATTCCTAGAACAATTGGGGTTTCCATTCCAATGAAGGCTACTTTCTTTAT GACATACATAATGGTTGATGGCTGGGCTGGAATTGCTGGTGAGATTCTCAGATTAAAGCCATTGGTTATATATCATCTCA AGAACATGTTCATAGTTAAAACTGAGAGAGATAGAGGAAAGGCCATGGACCCTGGGAGTGTGGACTTCCCTGAGACTATT CCAAGTCTTCAACTATATTTCCTTCTTGGAATTGTGTATGCTGTGGTGACTCCGATCCTTCTGCCTTTCATACTGGTCTT CTTTGCCCTAGCATATTTGGTTTACCGCCATCAGGTCAGTGCCTCTACTAGTTTTATCTCAAAACATAATTTGCATGCGA GAGCGAGATGATAAATAATTTGCATTAAGGTTCACAAGTTTTTATCATTTTTGTCTTGATGGGATATGATTAGAATGAAA TCATTAGATTGGCGCGGCTCTCATAGTATAACAGATAGTAGAAGTCATTAATTAAATGTATAGACTTAATAGAGTATAGT CCAGTAATTAGAGGTTAAAAAACCGAGGAGAATTTTAGGTCGAACCATCAAGAGAGATTTAGATGTGAATAATCTTTTAT TGGACTTGATTCATGGCAGGACATCATGACATTATTTGATCCATGTAGCTGGTTTCATCTAGTAGGAAAATGCTTTGATT GTTGTTATTGTTTAATTAAATATGCAGATAATCAATGTCTACAATCAACAGTATGAAAGTGCTGCTGCATTTTGGCCACA TGTTCACAGCCGCATTATCGCAAGCTTACTAATATCCCAGCTTCTAATGTTGGGTCTGCTTAGTTCCAAAAAGGCAGCTA AATCTACACCTTTGCTTGCCATTCTACCAATATTGACGTTCGCATTTCACAAGTACTGCCAACACCGTTTTGAACCAGCA TTTAGGAAGTACCCCCTTGAGGTATGATACGCGCTATTGGTGTAGTCTAAAATTCTTGAAGTTCCCTTATGTTTTCCTTT GGAGGTGGCTAGCTACATTGCTTGTTTCATATTTGATTGTTGGGTTGGTAACTGATTTCTCTTGATCTTTTCAGGAAGCA ATGGCAAAGGACTTATTGGAGAAAACCACAGAACCTGACCTGAACATAAAGGCATATCTGGCCGATGCTTACTTGCATCC AATCTTCAGATCATTTGAAGTTGAAGAGGAGTTGGTTGAAGTCAGGGTAGACAAACAACCCGAAACTCAAGTTGCTAGTC CCACATTGAGTGAGCCCAGTTCCCCCTCCCCACTCCATGATCATGTGCATCAACCTTCCCCACCTCAACATGTGAATCAG TACAGTCACTACCCAACATCACCACCAGGGTATTACTATCATCCTCCTCCCCCTCCTCATTATGCTTATCAGTATCAAGA TGAACCTTGAACTAGTGCATAGCAGTTACCAACTTGCTTGAGAGTTGAGACCCACTTGGTGTTTTTATCAACTTAGATTT GTGTTTTAGCCTTCTATATATCTATTACAATTGTAAATTATTATTTTTCTTAGGTGTAAATGTTATGGTTTCTTTTAAAT ATGAGGTTGCTAAAGTAGGTGATATTTCACTTCATCAAGCAGTTTGAAAGAACTCTCTTTTTATGGGTTTGTCGTATGCT TTCCAAATTAGTTTTTTGTAGTTAATTGGGTGATTATGCAAGTGATTCAATTTGTACTCAGCCCTCAAAGTGTTATTCAG ACATTTTAGGTATAAAATAATGTAATGCGAAGAAGAAAAACTTAATTGCACTTTTGGTTCATATAGGTTTAAAAATACGT AATTTTGGT 

CDS sequence (LotjaGi2g1v0340600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACCTTGGCCGACATTGGGGTCTCTGCTGCAATCAACATTCTCTCTGCCTTTGCTTTCTTGCTAGCCTTTGCTCT TCTCAGAATCCAACCCATCAATGACAGGGTCTACTTTCCCAAATGGTACATCAATGGAGAAAGAACCAGCCCAAGGAGCA CTGGGAATTTTGTAGGGAAATTTGTCAACCTCAATTTCAAGACTTACCTTACTTTCCTCAACTGGATGCCACAGGCTCTG AGAATGAGTGAGAATGAGATTATCAATCATGCTGGTCTTGACTCTGCTGTTTTCCTCAGAATCTACACTCTTGGGTTAAA GATTTTTGTTCCGGTGACAGTTGTGGCACTCCTCATTCTTATTCCAGTCAATGTATCAAGTGGGGCATTATTCTTCCTAA AAAGAGATTTGGTCGTGAGTGATATTGATAAACTCTCAATATCAAATGTTCCGTCCAAATCTTCAAGATTTTTTGTTCAC ATAGGATTGGAATACATGTTCACACTATGGATTTGTTTTCTACTTTACAAGGAGTATGACAATATAGCAATGATGAGATT GCATTTCTTGGCTTCACAGCGCAGGCGTGTGGAGCAATTCACAGTAGTCGTCAGGAGTGTCCCTCATATTTCTGGTCACT CAGTATCAGATTCCGTCGAGAGCTTCTTTCAAACAAACCACCCAAATCATTATATTGGACACCAGGCTGTCTACAATGCA AACAAATTTGCGAAGTTGGTAAGAAGACGAGATAGACTTCAAAATTGGTTGGACTATTACCAGCTTAAGTTTCAGAGGCA TCCTGACAAGAGGCCAACTATCAACACAGGTGTTTTAGGGCTTTGGGGTAGGAAAGTTGATGCTATTGAGTACTACAGCC ATACAATTAAGGAGCTTGATAAAGTCATGACATTGGAGCGCCAGAGAATTATAAAAGATCCCAAATGCATTTTGCCAGTT GCTTTTCTTTCATTCAGTTCTCGTTGGGGAGCATCAGTTTGTGCACAAACCCAACAAAGCAAAAATCCTACACTCTGGCT CACTGATTGGGCTCCAGAGCCCCGTGATATATACTGGAGGAACCTGGCCATACCATTTGTTTCTTTAAGCATCCGAAAAC TTGTTATATCACTATCAGTGTTTGCCTTGGTATTCTTCTACATGATTCCCATTGCTTTTGTGCAATCCCTTGCAAATTTG GAGGGTCTTGAAAGAGTTGCTCCTTTCCTCAGACCAGTAATAGAATTGAAATTCATCAAGTCCTTTCTACAAGGTTTTCT TCCTGGTTTGGCCCTTAAAATATTCTTATATATTCTACCGGCAGTTCTGATGATCATGTCGAAAATTGAGGGACATATTG CTAAGTCAACACTTGAGCGGAAGACAGCAGCAAAATATTATTACTTTATGCTGGTGAATGTTTTCTTGGGAAGTATAGTG ACCGGGACTGCATTTGAGCAACTGCATTCTTTCCTCCACCAGTCACCTACACAGATTCCTAGAACAATTGGGGTTTCCAT TCCAATGAAGGCTACTTTCTTTATGACATACATAATGGTTGATGGCTGGGCTGGAATTGCTGGTGAGATTCTCAGATTAA AGCCATTGGTTATATATCATCTCAAGAACATGTTCATAGTTAAAACTGAGAGAGATAGAGGAAAGGCCATGGACCCTGGG AGTGTGGACTTCCCTGAGACTATTCCAAGTCTTCAACTATATTTCCTTCTTGGAATTGTGTATGCTGTGGTGACTCCGAT CCTTCTGCCTTTCATACTGGTCTTCTTTGCCCTAGCATATTTGGTTTACCGCCATCAGATAATCAATGTCTACAATCAAC AGTATGAAAGTGCTGCTGCATTTTGGCCACATGTTCACAGCCGCATTATCGCAAGCTTACTAATATCCCAGCTTCTAATG TTGGGTCTGCTTAGTTCCAAAAAGGCAGCTAAATCTACACCTTTGCTTGCCATTCTACCAATATTGACGTTCGCATTTCA CAAGTACTGCCAACACCGTTTTGAACCAGCATTTAGGAAGTACCCCCTTGAGGAAGCAATGGCAAAGGACTTATTGGAGA AAACCACAGAACCTGACCTGAACATAAAGGCATATCTGGCCGATGCTTACTTGCATCCAATCTTCAGATCATTTGAAGTT GAAGAGGAGTTGGTTGAAGTCAGGGTAGACAAACAACCCGAAACTCAAGTTGCTAGTCCCACATTGAGTGAGCCCAGTTC CCCCTCCCCACTCCATGATCATGTGCATCAACCTTCCCCACCTCAACATGTGAATCAGTACAGTCACTACCCAACATCAC CACCAGGGTATTACTATCATCCTCCTCCCCCTCCTCATTATGCTTATCAGTATCAAGATGAACCTTGA 

Protein sequence (LotjaGi2g1v0340600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATLADIGVSAAINILSAFAFLLAFALLRIQPINDRVYFPKWYINGERTSPRSTGNFVGKFVNLNFKTYLTFLNWMPQAL RMSENEIINHAGLDSAVFLRIYTLGLKIFVPVTVVALLILIPVNVSSGALFFLKRDLVVSDIDKLSISNVPSKSSRFFVH IGLEYMFTLWICFLLYKEYDNIAMMRLHFLASQRRRVEQFTVVVRSVPHISGHSVSDSVESFFQTNHPNHYIGHQAVYNA NKFAKLVRRRDRLQNWLDYYQLKFQRHPDKRPTINTGVLGLWGRKVDAIEYYSHTIKELDKVMTLERQRIIKDPKCILPV AFLSFSSRWGASVCAQTQQSKNPTLWLTDWAPEPRDIYWRNLAIPFVSLSIRKLVISLSVFALVFFYMIPIAFVQSLANL EGLERVAPFLRPVIELKFIKSFLQGFLPGLALKIFLYILPAVLMIMSKIEGHIAKSTLERKTAAKYYYFMLVNVFLGSIV TGTAFEQLHSFLHQSPTQIPRTIGVSIPMKATFFMTYIMVDGWAGIAGEILRLKPLVIYHLKNMFIVKTERDRGKAMDPG SVDFPETIPSLQLYFLLGIVYAVVTPILLPFILVFFALAYLVYRHQIINVYNQQYESAAAFWPHVHSRIIASLLISQLLM LGLLSSKKAAKSTPLLAILPILTFAFHKYCQHRFEPAFRKYPLEEAMAKDLLEKTTEPDLNIKAYLADAYLHPIFRSFEV EEELVEVRVDKQPETQVASPTLSEPSSPSPLHDHVHQPSPPQHVNQYSHYPTSPPGYYYHPPPPPHYAYQYQDEP 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 5 5 -
PANTHER 3 739 737 0.0
PANTHER 3 739 737 0.0
TMHMM 5 27 23 -
Phobius 6 28 23 -
Pfam 7 178 172 1.5E-44
Phobius 29 107 79 -
Phobius 108 133 26 -
TMHMM 108 130 23 -
Phobius 134 156 23 -
Phobius 157 176 20 -
TMHMM 157 176 20 -
Phobius 177 373 197 -
Pfam 199 361 163 3.5E-41
Pfam 372 644 273 2.6E-83
TMHMM 374 396 23 -
Phobius 374 398 25 -
Phobius 399 417 19 -
Phobius 418 445 28 -
TMHMM 423 445 23 -
Phobius 446 465 20 -
Phobius 466 485 20 -
TMHMM 466 485 20 -
Phobius 486 572 87 -
Phobius 573 603 31 -
TMHMM 579 601 23 -
Phobius 604 628 25 -
Phobius 629 646 18 -
Phobius 647 651 5 -
Phobius 652 670 19 -
Phobius 671 795 125 -
MobiDBLite 731 795 65 -
MobiDBLite 734 772 39 -
MobiDBLite 775 789 15 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0340600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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