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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0340800 |
| Transcript ID | LotjaGi2g1v0340800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L35; TAIR: AT5G45590.1 Ribosomal protein L35; Swiss-Prot: sp|A0PZN3|RL35_CLONN 50S ribosomal protein L35; TrEMBL-Plants: tr|A0A1J7ICZ0|A0A1J7ICZ0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0340800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81772054..81776563) extracted from Lotus japonicus Gifu genome v1.2.
GCTTCTCTATCTAAAACGTTCCACTAAACCCAAAAGAACAATAAAAGCCCAAATAGCCCACTCTTTCATCTCCAAACAAA CCAACTTGAAAAAAAAACCTCAACCCCCAAATTAAAAGCAAAAAAAAAAAAAAAAAACTTGAGAATCGATCTCAAAGTGT TCCGGCAACGATGATGCAGCGATGCCTCGCGAGGCTCCGTTCTATCGCCGTCGTTTACTCACGCCTACCTCCACCACCAC CGTCATCTCGCCGCCTCCTCCACCACGCGCCGCCGCAACAACCTCTTCACTCTCATTTCTCCACTCCTAACCGCTCCTTC CTTCCTCCCTTCATCTTCTCTTCCTCGCCGCTACTCGCACCTCGTTCTTCTCCGCTTCCTCCCTCTGTAAGTATCGCATT CGTTTTCGTTCACCATTTCTGTGAATAACAACAGTTCAGTTGATTAATCTGTTGCATTGTGTTTGGTGTGATTGTGAATA GTTTGGTGTTCAAGTGCGGCATGCTGTTTCGTCGAGGGATCGGAGGAAGAAGAGAAAGGCTATGAGTCCTGCTGTTTCCA AGCTTAAGAAATACAAAATCAAAGCCTACTCGTGCGTTTTCTTGTTCTTGTTCTTCATTGCTTTTGATTTGTGTGTGTGT GAGTGTGGAATTGTGAATGATTGTTTTGATTTTTTGCAATGTTTGGTTGAAACAGGTCTTTCAAGTCCAGGTTTAGACCA TTGAATGATGGCACTATCAGGCGATGGAAGGAGGGTAAACGTCACAATGCACATTTGAAGGTTCCCTCTCTTTCCTTTCC ATTTTTTCTCATTTCATTGTAGATATGAATTAGGTTGTTAGTTTAGGTTCTTATGATGTAAATATCTGATGGTTATTTTG AAAACTGAGTGAGTTTTCGATGATTCTATTGTTCTGTCGGTTACTGACAAACAAAATTCATATTTCAGCATTTCATGAGG TGAAATGCAAATGAAATGACCTGAGTTCTTGTTGACTAATAAGCTAGCATATTCACAGTGAATAGCTGCTGTCCTTTTTA AATAGGTTTTCTAGAGCATTTGTTGGGCGTTTCAATTTGAATTCCTTCGATGAATTGGCCAAACACTTTACATGAAATAA TTTTTAGCATGTTTCTTTCTCATGAGAGAAATTGTGTTTGGAAATTGAAACAATAATGTCTGACATGGATTACACAATGT TTGTTTCTAATTTAATACAAGGAATAGGAAAAATGTGATTTGGTTTTCTTCGTTTGCTGAAAATGGAGAAACTCGTGTTT CCTCAGGAAGCACGGTTCTGAAATTTTACTGGGTGGTAAGGCAGTGATTATGTTTGTATGTGATGTATTGATAGGCATTT CAAAAAACAAAATGCAAGATAGTCATATTAGTGGCATTTTTTGTGGGCATATGCTCCATACTTTAAAGTGCAGCGGGCCT CAATTTGGAGGAGCTAAATCATTGCATATAGGTCAATATGATACGTTTGCACTTTGTAATTTTTGAGCATGTCATTTATC AAAGACCAAAATAATTGCATTTGTGGTTCTTATTTCATCTTCATTAGAGCTGCTGGGCAGTTGGCACCCAGCTCAAGGCT GACCATTACCAGGGAATGGTAGCAGCTTCCTCATGTAGCCTTTTCCCCATGATGTGATTGATTACTTGAAATCAGATACT AATATGTTTGTGCCTCATTGATATACTTCGGCAATAGTTTTTGTTAAACTCCCTTAATAACTGTCTGTTCTGAAAGTAAC ACATATTTTAGGTAAAGTACTAGACTAGTACTGTGTTTGGACTTAGGATTAGTTTATGATGTGTTCAGACAAATTTATGA TCACAATGCTGCGGAGAGAGCATTTCGTGGAAAAGCTGTTTTTGTGTAAAATTAAGCGAACACCACATCTAAGGCCGACC TCCATTACATACCTAATATAATTAAACTTGCCTCTCCTCAAATTTTAAGTCAATGGAACAATACACGCATTTAAAATATT TATATTAGATTTTTTTATTGAAAATAATATTGTTTTTACAAATATATAAGAGCTAATAAATACACACACATATGATCTAC TGAACTAGTTAGCACATTTTAACAGAAAAGGATAGAAGACAACACTATTCTCCATTAGCGTTTGATTGGAAGGTACCAAC ATTTCTCCTTACTCAGTTTTGACTCCCCTCCAAAATTGGGGGATTTGGAGGGAGATAATTATAAATCATGTGACTAAAAT ATCCTTATTCATTTTGAAACCCAAAATTTTATTTTAAAAGTTAGGGCATAAATAGTAATTTCACTCTCCTCCCCTCATTG AATAAATAAGGGAAGGGTTATCACCCCTCCCTTCCTCTCCTTTGAACCAAACACAATGTAAAGGTTTGTTTCAAAAAAAA TGTAAAGGTTAAAATTTTCAGGTACATAAAGCTGGTATGGTTTATGTGTTTGGTTTTTATTAGAAGTAGAACAGGACATG ATGTGATTAGACATTGATGTATTTACTTTTCCTATGAAAAGAGTGGAATCAAAGAGAACGGAATAAAACAAGTTCCTAAG AGTTAGAAGAGTACATGTTATCTCTCCACCAGATAACATACATTGCCTTTTACACTATATAAGTTCTGTTATAAGTACAT AATACTTTTATGATCAGACCCATCTTATGCCCCCCCCCCCCCCAATTTTTGCATACATATGATTTAGAACTATCAAGTAT CAACGATATAGTAAGTACGGAAATAACATTTCCTAAGAACAATGCTGTAAAACCCTGTATTTGAATTTTGGAAACTATGT TACTCTGACACTGCATGGTTAGACTGTAATTAATGGATTTGTTTCTCTTTTATATGTTCTTAACAAAAGTGGGAAATGAA TTGAATTATGAGAGAAGTCTATGGGTGAATTTCTGATTTTGATCCATACAATTTACTGAATGATAAATGTCAGTGGGGCT CGAACTTAGAGTACACTGTGGAGTGTGGAGACAATTCAGAATACACACTAGCAATTCAAAATGCATAGTGGGGGCAACAA AAGAAATCCTTTATCTGTAATACTAAATTTGTAAATTTAGTGGGGGCAACAACAAAATACCTGTCTCTGTAATCCTGGAT TTGTGAACTTAGTGGGGGCATTTGGCCTAATAGTTCACTCCATATGGATCTGCCCATGGAAATAAAACTGAAACAATAAG AATCTTGATATTCTAACTGAAATTAATTGTCTAATAGTGCAATTAAATATTATCTAGTTTGTCTCTGGAGCTTGAGACTC TCGGCTGGATGTGAGACATGAAACTCCCATAAGTATGAAGGGATTGAATTTGAATAGTTAACTTTGCTTTACTTCAGTTC TCTTTCTCTCATTACAGTATTTGTGAATTAGCCGTTTCTTATATTTTAATTATGTGTACTATATCTCTGGACAGTACGTA GTCCTTGGAATTGATTAATTTTGTATATTAAGTCCTTGAAAATTTATTTTAAGTCTGAAGGGATTGAATTTGAATAAGTT AGAAGCTTCAAATAAATGTCATAAGACCAACATGGTCACTTGAAATTGATGAAGTCCAAACAGTAATCTTTGCTTTACTT CACTAAGCCGTTATCATTACAATATTTGTGCATTGGCCATTTCTTTATTCTATACTATGTCTCAGGATAGAACGCAGTCC TTGAAAATTGATGAATTTCTGATATTTATTGCAGTCAAAGATATCCAAACGCAGATTGAGACAACCTGGGATTGTTCCTG CCGCTTATGCCAAAGTGATGAAGAAGCTAGGTTTCTGTGGTTAGAACATTGTAAGTTGCTGCCAGTTACAGCATGAAAGT GGACTGGTCAGGATTTGCTTTTTAACTCTGATCATTTGTCCACTTTCACATTTTAGAATCTGTAGAACAGCAAATTACAG GGCAGTTTCATTCTTATCTGTTTGTGTGGAACAGTTAGAGTTGATAATATTTCGAGTTCTAAGTGGCATACTTTAGTGGA CAATGTTGCAATATTGTTAACATGCTGATTGATCCTTCTTTTGCGGTTAGATTTGATTTGTTTCATTTTGCAGTTTGATA AAATAAAATATCGGACTCATCGATTGCTTTGCCACAAATAGTAATGGCATAATTAGGCTATCGGTTCGTGTATTTTACTA TGATTCATATTAGTGTTGTTGCAAAGAGACTAGAGAGTGTTGTTAGTGTTAACACATTTCTTTTAGTATTGATATTTGTT GCTAACACTTGCTAATAAAATACGAATGGTGGCGTGGGGTGGTTGGCAGAAATCATGGGGTGCGCTATCATTGCATCGTT AAAAATGTGCTCTCACTAACTATGATTTCCCCCTTTTTTGGTGTGTGCTCAGTAAAGCTCAAAAACAAGAAAAATGATAA GACCACACCTCTTGTGAGGAGACAGGGAAATAAAGATAGAAAGGCGTGGGTGGGCTCTAAAAAAGTTGAAGTACATAAAA TTCAAAGTTTGCTGTAAAAGCTATCAACTC
CDS sequence (LotjaGi2g1v0340800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGCGATGCCTCGCGAGGCTCCGTTCTATCGCCGTCGTTTACTCACGCCTACCTCCACCACCACCGTCATCTCG CCGCCTCCTCCACCACGCGCCGCCGCAACAACCTCTTCACTCTCATTTCTCCACTCCTAACCGCTCCTTCCTTCCTCCCT TCATCTTCTCTTCCTCGCCGCTACTCGCACCTCGTTCTTCTCCGCTTCCTCCCTCTTTTGGTGTTCAAGTGCGGCATGCT GTTTCGTCGAGGGATCGGAGGAAGAAGAGAAAGGCTATGAGTCCTGCTGTTTCCAAGCTTAAGAAATACAAAATCAAAGC CTACTCGTCTTTCAAGTCCAGGTTTAGACCATTGAATGATGGCACTATCAGGCGATGGAAGGAGGGTAAACGTCACAATG CACATTTGAAGTCAAAGATATCCAAACGCAGATTGAGACAACCTGGGATTGTTCCTGCCGCTTATGCCAAAGTGATGAAG AAGCTAGGTTTCTGTGGTTAG
Protein sequence (LotjaGi2g1v0340800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQRCLARLRSIAVVYSRLPPPPPSSRRLLHHAPPQQPLHSHFSTPNRSFLPPFIFSSSPLLAPRSSPLPPSFGVQVRHA VSSRDRRKKRKAMSPAVSKLKKYKIKAYSSFKSRFRPLNDGTIRRWKEGKRHNAHLKSKISKRRLRQPGIVPAAYAKVMK KLGFCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 166 | 165 | 6.8E-54 | – | |
| MobiDBLite | 74 | 95 | 22 | - | – | |
| Pfam | 103 | 162 | 60 | 2.1E-13 | ||
| SUPERFAMILY | 103 | 162 | 60 | 4.84E-11 | ||
| Gene3D | 105 | 163 | 59 | 1.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi2g1v0340800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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