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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0340900 |
| Transcript ID | LotjaGi2g1v0340900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit beta; TAIR: AT5G44240.1 aminophospholipid ATPase 2; Swiss-Prot: sp|Q3K3L2|RPOB_STRA1 DNA-directed RNA polymerase subunit beta; TrEMBL-Plants: tr|I1J4L0|I1J4L0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0340900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81778916..81783140) extracted from Lotus japonicus Gifu genome v1.2.
GAGCATTGCATTAATATATACACCCTTTCACAAGACCCCTTCACACCCTAAAAAAGCTTCATTTGCCAAGCTGTGCACAG TTGCACTCACCAAACCAAACATGCCCTAAAGTGAGACTCACACTAACATAACACACCACAACACATTAACACTAGTGTCA TTCATTCACCTTGGCTAAACTAAACATCCAAACCCTCCAACCTAGCTCCTTTATTTTTTCCTCACTCTCCCCTGCACTTT CCCCTCTCTCACTCACCCCATTACTCACTCTGACACACTAACACACACCTCTGCCTTCGTTTACTGTGTCCAAAGCAGCT AGCTAGCACTGATGAAAGAGGTGACCGTTGAAGCTGAAGGTGGCGGCCACCACCAAGGAGGAGCACAAGGCGGCGCACCA GAGAATGGGAAAGGAACAACAGCCACCAGGCCAGACTTGCACAACAGGGCCATGAAAATCTTGAGAGCTAGAGAGGCTTA CAATGGGTATGAAGAAGTTGGAGAAAAACCCTCAAGATTTGAAGTCATGGGGTGGTACCTTTATGAGTTCTGCTCCTACT TTATCCAAACTGTCCTCATCCCTGTTGTGTTCCCTCTCATCATCAGCCAGCTACAGAACCTCCCTGCAGACTGGGCCAAG AACAACCGCCCTGCAGGCACACACTGCTCACAAAAGGAACTTCATCTGTAAGTACTACTAGCTAGTTCACTCACATTTTC AATTTTTCCATTTTTAAAATGCAATTTTTCCTGAATTTTTTGCTAACCATTTAAACTAATTAAGTAAAAATCCAAACTAT GAGTAACCTTCTTGATCTAGACTAGTTTTTTATTTTTTGAGTTTTTCAAAATTTTTCAAAGGTGGCCATGGCCATTGATG GGTATGATATGAATCATTTTGGTTAAAAAAGTTTTTTATTTTTTTTATTTTTTGAGAAAACAAGGGCGTGACAACCTCAA CATAGGGTTCCACTGTTGTTTTTAAATTTTTTAAAATAATATCTGGGCCGTTGGTTTTCATTCCACTATGGTTCACCATC ATGAAAAGCCGTGTCCTTTGTGGCTTTCTCTCACAATCCTACTACTTTACTCTACTCTTACTCAAGGGTTAAGATTCCTT TTTATTCAAAGCACACTTCATTACCCACCGGACATGAACCTCATTTATTAACTGTATTGATGTACCAAGAAAAAAACAAG TTGTGTTCTCGAATTGTTGGCCAAAACAAGTGAGAGAGATAAAAATAATCTGTGCCCTCCTCCTAGGGAGTATAAAAATG TTTGTCGCCACTCTAAGGAAAGTCATCACTCATCTTTTGAACTTTCAACATTTTTATATAAAAAAATATTATCCACAACG GTTAAATCACCCTCAAAATACTGCTTTACTCCACTTGATCATACTTTATTTTCACTTTTTTAAAAAAAAAAGTAGCAGTA TTTACGCTACACTTTAGACCCTTCTATACATTGTTTATATACGTACATAATACACACTTGAATAGTGTATAATCCTTGTT TTCTCAAAGCATTAGCCATGTGTTTTGTAAAATATTTAACTCAAGTCATTGTCGGTTGTTATTAACTTTACTTTGGTGAT ACTAATCAGATTATCGACAATTTACAGTGCCGACAGTATGAAACTGTTTCTGTAAAGTACATAACTTTTTTCAAAACAAG ATAAAAAAGCTTCCACTAAGAATTAAGTGATTGTTCCTTTGTGTAAATACAAATCTTGCCAAACATGGCTTGTAGAATTA CATGATCAAGTTTCTACTTTCTACTCAAACAGTAATACAGTAATCATCAGTTTGTAGCTACAGGAACTGAATAGTCCTTT CCATGTGCACCATGCGTGTTTCCAAAGTTCCAATTAAAACCAGGGCAGCATCCCAATTAATTGCCCTTGATGTACATGAT ATTTTGTGCCCTACATCAATTAATAAAACACATCTGTAAATTTACAGTTAATTTTTACAGTTAATTCTAAAGTCAAAAGT CGCGATCAATTCTGATACTTACAAGTCAGTTTCAATGAGGAACTTCTGAGTATCAACCTTGATTCAGAACAAATCATGAT TAATTTTGATACCCAAAATTTACATGACTGAGCTTTTATGAGTAGCTTCTAAATATCAGAATGAATTATGTGTAATCTAT TTAGCTTTTATGAGTAGCTTTTGAGTATCATAATTTTGAGTATCATAATTGATTATATGTAAGTAGAAGCTCAGTAACTT TTAAGTATCAGAATTGATCCTGACTTTGTTTTAGCTACTCATTGAATCTTGGTGGCTACCAAGTATTAGACTTGATTCTG TGTAAGCTACTGAGCTTCTATAAGTAGCATTTGAGTATCAGAATTGATTTTGTGTAAAGTAAGTTGATTGAAAAATGCTC TAAGTGGTTTGAGCTACAGATTACTAACTAGCTACTTCATAATTAAAAAATATTTAACCAAGTTTGAAAATGTGTTTTGT TTTGCAGGTATAGCAAACTGACAAATCAGACCATAACTTCAAATTTCTCCGCATTGGAATGGACATCAATTGGTTGGGCC ATAGGCCTAGCTATTGCTGCTCCAATCCTTGGCTTCCTTTCCTTCCACCTTGATGGCCACTTCCCCAAATTCATCACAGT TGCATCCACAGCTGTTGGAGTTTTCTTCTGCCTCCCTGCAGGCTTCTTCAAAGTCACAGCCATCTTCATCCCCTACATTG CCGGCATCGTCGCAGCCAGCACGGTCGCCACCGCCGCCCACACCCACCACCTCGGTCTCATGATCCGTTCCTTCACCGGA CCGACCCTCAAAAGATCCCAATTCCCTATCAGGCAAGGAATCTCAAGCAAGCTCTCGCTTCATGCGACCGCAGCTGGTTG CTTAGGCTCAGCATTGATCTCAGCCTTCACCTACCACATGATTCGTGAGCTCAATGTGAATGAACCTGACATCATGAGTC TCTGGATTGTTTCAATCTTCAGTGGCCTAATCTGGCTTGTGGGGATTTTCCATGTTGCTACAGCCATTGGCAGAACCACT GATGAAATTTCATTCTCCTCAAGGCTCCACCCTTTCTCAGTTTTCAAGTACCCTCACGCCATTGGAGCACTCGCTAGTGT TTTCATCTCCTCATTCATCACCATGACGATTTTCACAGGAGGGGTTGTTTTCATAGTGGGCCAGCTCTGCATTAAACCAG TGCATTTACTCTTCTTCTGGCTAACTTACTTCCTTTTCCCTGTTTTCTCTCTGTCTCTGCTTCAACCCCTGTTGCGTGTG ATCAAGATGAACTCAGTGAAAATGCAGATTGTGGGGTTCCTCTTTTCACTGATATCTTCGGGTTTTGGATTCTACTACGG TCACAGCCACTGGAAATGGGGCCACTTGGTGGTGTTCAGCGTGATTCAGAGCACTGGAACAGGGATTTTGCATGCATTTA GCAGGGTTTTGGTTCTGGATTGTGCTCCATCAGGGAAAGAAGGTGCATTTTCGATCTGGTACGCGTGGATGCGAAGCGCA GGGTTGTTGGTGGGGTTCACGGTGGGTTCAGTGTCTCCAGGAAACATCAGAACTTCATTTGGAGCTGCGTTTTGCACTGC CATTGCTGGGATTGTTGTGTTGCTTTTTGGAAATATCAGTGATGTTGGAGGTGCTGTTGCTGCAGGGCATGTCAGGGATG ATAGTGAGAGAAGCTCTGCTGTTGCTGGATTGGATACGAAGGAATCTGTGCATGTTTGAATTGAACTCCATTAATAAACC AGTGAATGAATGGTTATGGTGATGATAGTGCATGGTACATTTTGCTGTCTGTGCTTATATGATTCTTTGCAAATGATGAT GATGTTAGTGGTGGTGCATGCAAGGGTAAAAAAGGGTTTTATTTCATGATTGATTTTAGATTTTAGATGTATTCTTGTGG TTACTGTTGTTCTTGGGCATGCTTGTGTTTTTTCTTTTTTCTTTTTTTAATCTCTGTTTGAGGATTTGGGTTCTGACCAG TATAACTGTGTAATAGTATTTTGTCATATTTGTTTCTCATCATTTCTATATACTCATTACTCATGCTGTGGCCTAATTTA TTATATAACTTTATAAGCATCGCAACAGCATTCAATTGCTTATTATATGGTTGACAATCTTTATTATATGGTTGACGGTG CATGCTCCGGTGCCCATAAATTCAAATGAGTGTAAGCTACAGTAGTGACATATACTAATAATTTC
CDS sequence (LotjaGi2g1v0340900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAGGTGACCGTTGAAGCTGAAGGTGGCGGCCACCACCAAGGAGGAGCACAAGGCGGCGCACCAGAGAATGGGAA AGGAACAACAGCCACCAGGCCAGACTTGCACAACAGGGCCATGAAAATCTTGAGAGCTAGAGAGGCTTACAATGGGTATG AAGAAGTTGGAGAAAAACCCTCAAGATTTGAAGTCATGGGGTGGTACCTTTATGAGTTCTGCTCCTACTTTATCCAAACT GTCCTCATCCCTGTTGTGTTCCCTCTCATCATCAGCCAGCTACAGAACCTCCCTGCAGACTGGGCCAAGAACAACCGCCC TGCAGGCACACACTGCTCACAAAAGGAACTTCATCTGTATAGCAAACTGACAAATCAGACCATAACTTCAAATTTCTCCG CATTGGAATGGACATCAATTGGTTGGGCCATAGGCCTAGCTATTGCTGCTCCAATCCTTGGCTTCCTTTCCTTCCACCTT GATGGCCACTTCCCCAAATTCATCACAGTTGCATCCACAGCTGTTGGAGTTTTCTTCTGCCTCCCTGCAGGCTTCTTCAA AGTCACAGCCATCTTCATCCCCTACATTGCCGGCATCGTCGCAGCCAGCACGGTCGCCACCGCCGCCCACACCCACCACC TCGGTCTCATGATCCGTTCCTTCACCGGACCGACCCTCAAAAGATCCCAATTCCCTATCAGGCAAGGAATCTCAAGCAAG CTCTCGCTTCATGCGACCGCAGCTGGTTGCTTAGGCTCAGCATTGATCTCAGCCTTCACCTACCACATGATTCGTGAGCT CAATGTGAATGAACCTGACATCATGAGTCTCTGGATTGTTTCAATCTTCAGTGGCCTAATCTGGCTTGTGGGGATTTTCC ATGTTGCTACAGCCATTGGCAGAACCACTGATGAAATTTCATTCTCCTCAAGGCTCCACCCTTTCTCAGTTTTCAAGTAC CCTCACGCCATTGGAGCACTCGCTAGTGTTTTCATCTCCTCATTCATCACCATGACGATTTTCACAGGAGGGGTTGTTTT CATAGTGGGCCAGCTCTGCATTAAACCAGTGCATTTACTCTTCTTCTGGCTAACTTACTTCCTTTTCCCTGTTTTCTCTC TGTCTCTGCTTCAACCCCTGTTGCGTGTGATCAAGATGAACTCAGTGAAAATGCAGATTGTGGGGTTCCTCTTTTCACTG ATATCTTCGGGTTTTGGATTCTACTACGGTCACAGCCACTGGAAATGGGGCCACTTGGTGGTGTTCAGCGTGATTCAGAG CACTGGAACAGGGATTTTGCATGCATTTAGCAGGGTTTTGGTTCTGGATTGTGCTCCATCAGGGAAAGAAGGTGCATTTT CGATCTGGTACGCGTGGATGCGAAGCGCAGGGTTGTTGGTGGGGTTCACGGTGGGTTCAGTGTCTCCAGGAAACATCAGA ACTTCATTTGGAGCTGCGTTTTGCACTGCCATTGCTGGGATTGTTGTGTTGCTTTTTGGAAATATCAGTGATGTTGGAGG TGCTGTTGCTGCAGGGCATGTCAGGGATGATAGTGAGAGAAGCTCTGCTGTTGCTGGATTGGATACGAAGGAATCTGTGC ATGTTTGA
Protein sequence (LotjaGi2g1v0340900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEVTVEAEGGGHHQGGAQGGAPENGKGTTATRPDLHNRAMKILRAREAYNGYEEVGEKPSRFEVMGWYLYEFCSYFIQT VLIPVVFPLIISQLQNLPADWAKNNRPAGTHCSQKELHLYSKLTNQTITSNFSALEWTSIGWAIGLAIAAPILGFLSFHL DGHFPKFITVASTAVGVFFCLPAGFFKVTAIFIPYIAGIVAASTVATAAHTHHLGLMIRSFTGPTLKRSQFPIRQGISSK LSLHATAAGCLGSALISAFTYHMIRELNVNEPDIMSLWIVSIFSGLIWLVGIFHVATAIGRTTDEISFSSRLHPFSVFKY PHAIGALASVFISSFITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPVFSLSLLQPLLRVIKMNSVKMQIVGFLFSL ISSGFGFYYGHSHWKWGHLVVFSVIQSTGTGILHAFSRVLVLDCAPSGKEGAFSIWYAWMRSAGLLVGFTVGSVSPGNIR TSFGAAFCTAIAGIVVLLFGNISDVGGAVAAGHVRDDSERSSAVAGLDTKESVHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 68 | 68 | - | – | |
| PANTHER | 27 | 532 | 506 | 2.1E-231 | – | |
| SUPERFAMILY | 63 | 499 | 437 | 9.55E-8 | ||
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 69 | 91 | 23 | - | – | |
| Phobius | 92 | 139 | 48 | - | – | |
| CDD | 131 | 499 | 369 | 5.58541E-5 | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 140 | 160 | 21 | - | – | |
| Phobius | 161 | 166 | 6 | - | – | |
| TMHMM | 167 | 186 | 20 | - | – | |
| Phobius | 167 | 186 | 20 | - | – | |
| Phobius | 187 | 191 | 5 | - | – | |
| TMHMM | 190 | 209 | 20 | - | – | |
| Phobius | 192 | 209 | 18 | - | – | |
| Phobius | 210 | 240 | 31 | - | – | |
| Phobius | 241 | 264 | 24 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 265 | 275 | 11 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 276 | 299 | 24 | - | – | |
| Phobius | 300 | 319 | 20 | - | – | |
| Phobius | 320 | 348 | 29 | - | – | |
| TMHMM | 327 | 349 | 23 | - | – | |
| Phobius | 349 | 359 | 11 | - | – | |
| TMHMM | 359 | 381 | 23 | - | – | |
| Phobius | 360 | 381 | 22 | - | – | |
| Phobius | 382 | 392 | 11 | - | – | |
| TMHMM | 393 | 410 | 18 | - | – | |
| Phobius | 393 | 410 | 18 | - | – | |
| Phobius | 411 | 415 | 5 | - | – | |
| Phobius | 416 | 441 | 26 | - | – | |
| TMHMM | 420 | 442 | 23 | - | – | |
| Phobius | 442 | 452 | 11 | - | – | |
| Phobius | 453 | 471 | 19 | - | – | |
| TMHMM | 455 | 477 | 23 | - | – | |
| Phobius | 472 | 482 | 11 | - | – | |
| TMHMM | 481 | 503 | 23 | - | – | |
| Phobius | 483 | 502 | 20 | - | – | |
| Phobius | 503 | 535 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0340900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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