Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0341600 |
| Transcript ID | LotjaGi2g1v0341600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 45B; TAIR: AT1G32127.1 plant viral-response family protein; Swiss-Prot: sp|Q3T130|TM45B_BOVIN Transmembrane protein 45B; TrEMBL-Plants: tr|A0A151THE3|A0A151THE3_CAJCA Transmembrane protein 45B; Found in the gene: LotjaGi2g1v0341600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81874322..81877759) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTCTTTCAAGGGTCATGCTTTGCCAGGGACATTGTTTTTTGTAGTTGGTGTGTGGCATATATGGTGCTCTGTGGT GAGATACTGGCGCAATCCTAAGACATTTCGAGTCCGGGTTTGGAATCCTGTACCGGGGTTTAATGGGAGGCTCAAGCACC TGGAGCTCTATGTTATTGCAATTGGCGCTTTTATTGACATGTGCATCGAGCTCTTCTATTCAACTCACCTCAAGATATTT GTTGGTGGAGTCCTTAACCCCTCTCACATGAATGACTTTGAGCACTCGGGAATGCTTTTTATGTTTTTCATCTTGGGTGT TGTTATCATACTTACCGAAAAGACCAGGTTAGTTCCTCATTTTCTAAATTTTTTTCCTTGTTTAAAGCCATTCACCAATC TCCCGTACCTACTTAGATAGGATTAATTATGCTGATATGATTTAAATGCATTTATCGTTAAAGGATTACGACTGTTTATC TCTGAATTGCCCTCAAATCTCCTATCGCTGTAAAAAAGGTTGAATGTGAAAGGTGAGAGGACACAGTACCTACAAAAGGC ATTATGATATTGAAACTAAGTGCTCTAGATAGGGTTTTAGAGGACAAAAGTGATACATTATATGCTTGTTTGCATCCACA TTAGCATCCACCACAAGCGCGTAAGTTGTCACATAAGTTCACCTGAGTAGCTTCTAGTTCAAATGTGCTTTGGGTCCTCA GTCTTTTGGGAATCCAAACACATTATTATGAAGATTTTTAGTTGCCGTTTTTTTATGTCTTTCCTTTCTTAACACTTAGT GTCGATACCCTAGATCCATCCAAACCAACCAAAGGTCCCACCTCAATGATAGAAAAACCCATATTCTTGGTGGAAATCAT GAAACCGGAATCAATCCAAACCAATTAGCGCTATCACCTCAAAGTCCCGTCAGCCACATGATGTCAAGATTCACATAAAT CATTGTCAAGACTCCCATGCTGACATAACTTTGAGGTGGATCTCTGTTGGTTTAGGTAGATATTTGGGTCTCAACACGCG TTCCGGGTCCAGTATATTACTATATTATACACTAATTGTTCAAAATATTTCCCCCCTCCTTTCTATAGTGTTAAAACAAA GAATAATGTCTGATCTGTTAAGAAAATAGTAAAAGGGAGAGGGGAGAAGAGAGAATGCAAGAGTGAGACAAGAAATATTG TGGAATTGGAGGTGCTTGATGCTTGATGCATCATCCTTTATTTATAGCCTTAGGGAGCTACAAGTGAGACAAAGAAATAT GGGCTTGGCCCATGGTGGTCATCTATTCACAACACGATTCTATTATTTGTTTCCTTGCTAGGGGTTAAGGAACTTAAAAC TTTTATTTTAATGAATTTTTTCACCCTATTTAATTTTGGAATTTAAACTAAAGGTAGAGCAGTGTAATGAAGCTCTAGCA GTTTAGTGACAATGTTGTAATCTCACAATGTACCAAGTTACATTGAAATGAAATTAGGCTCTAAGGGTATTGTTTAAAAC AAATGAAAGAAGTTAGATTCTAAGATAGATATGCCATATGTATGGCACTTGTAGATCTTCTTGCAATTGATTTCATGAGT CCAAGGATGCAAAAAAGTGGTAGTCTTCGATTAGGGTCCAATTTATCTCTTTTGCTAGGAGCGGGTAGCATGTCTCTTAT TGCCAAATGGGCTTAGAGCCAAGTTTGTAATTGTATGCTATTTTTCTTGCCAAATTGTTTTTGTTTTCATTTTTGTTCTG CTGCCTACTTCATGTTATTATTTCCAAGTCCACCATGCTACTGATAACAATTGAAAGCCACAAGTTATCTAGTTAAGCTC CAATAAGTCCATTCTCCCATAGCTGAACAAAGAAGCTACTTCTTTTCCCTTATTGTTATTTAAATTGGCATTCTCACAAA TTGATTATGTTTCCTTCTGTGTGTCCACTAATTACATTAGTTTCTTAAGCAGCCTAGTGTTCCCTGCTGCGTTGTAAAAG TTAGTGATGATGTGTAAATTATGCATCCTTTGCTTGTGGTACAATGTACTTCACATACAGTTTTCAAAGAAAGCAAGTTG AGGAAAAAAATAGTTGTGTTTGGTTTGCTCTGGGCTAATTGCTGATTTCGGTGAAGCGTAAAGCTAAGATGCTATTAAAT TTATAAAGATATCTTTGCATTGTGAGGGGGCTAATAATTATGCTGTTTGCCTGAATTTATCTTATTTAGTGTGCTTAAGG GATATTCAGATAAGATATGAAAAATATCCATGAGAAATTAGCTGAATAAGAAGGCAAAGGTTCTCTCACAAATCATGAGG ATGTGACACATCCTTCATGCACACTCTGTAATTAGGTTCTCAAATGTTCAACACTGCTTGCTTTGTTCAATTGCCTCAAA CCTTTCCTCTTCAATCTATTAGGTTCTCAATATATCTACGCATATTTGACATCACAACCTGTTAGGATTAATTATATTAG GATTTAATTTATTTTAATTTAGGATTCTATCTTTTGTTTTAGGAACTAATATTGTATTTTAGGATGTTATCTTTTATTTT GGTTAGGATATCTTCTTTATTTCTTAGAGGTTAAGTTATCTTATTAGGATTAGGTTATTATAAATAGGAGTGCCCTCCTT AGGTTAGAATCATGGATTGATTTATTGAGTTGTTAAGGGAACCAGCCCTATTGAAGAGGAACCAGCCTCTTGGTTCTAAG AGGAACCGGCCTCTTAGTTCTTATCTATCTTTATTTTCCAGTCTTTTATAATAAAATACCAAAAATATTCCTTTTTGTCC TCTTTTCTCTACCGATTTCCCTGTTAGGATTTTCGGGTCCTAACACAACCCGTAGTCTATTAGGGTTGAACTTGAAACCT TATCTGAATGTGATTACCAATTCTCTTTTTAGCATCTTAACATGTCTTGTTCTTTACACAGATTTGTTCCTTTGCCAGAA GGTGCTCTTTGTCTGATTGCTGCTGCAGCATTCTGCACAGAATATCTTCTATTCTACTTTCATTCAACAACACATAAGGG CCTTGAAGGCTGTTACCACACCCTCCTTGTCTACCTGATAGGGCTGTGCATTTTATCCTCAGTTGCTGGAGCCCTTTTGC CAACCAGTTTTCCAGTGGATTTATGTAAAGGCATTGCTATAACACTGCAAGGCATCTGGTTCTATCAGACTGCCTTTGTT CTTTATGGCCCCATGCTACCGGATGGTTGTAAGATAAGGGATAATAGTATCACATGTCATTCAGATGACAGTGAGGTTCG GGGCGAATTGCTTGCTAGCTTTCAGCTCTTTGTTGCTGTTCTTGTGGTCTTTGTGGGAACTTTAGCATCCTATGCTTATG CAGCTTCAAAATATGGGAACTCTCAAGTTACTAACTTGCACATAATTCAGGAAGGATTAGATCAAGACTGAAGTAGAG
CDS sequence (LotjaGi2g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTTTCAAGGGTCATGCTTTGCCAGGGACATTGTTTTTTGTAGTTGGTGTGTGGCATATATGGTGCTCTGTGGT GAGATACTGGCGCAATCCTAAGACATTTCGAGTCCGGGTTTGGAATCCTGTACCGGGGTTTAATGGGAGGCTCAAGCACC TGGAGCTCTATGTTATTGCAATTGGCGCTTTTATTGACATGTGCATCGAGCTCTTCTATTCAACTCACCTCAAGATATTT GTTGGTGGAGTCCTTAACCCCTCTCACATGAATGACTTTGAGCACTCGGGAATGCTTTTTATGTTTTTCATCTTGGGTGT TGTTATCATACTTACCGAAAAGACCAGATTTGTTCCTTTGCCAGAAGGTGCTCTTTGTCTGATTGCTGCTGCAGCATTCT GCACAGAATATCTTCTATTCTACTTTCATTCAACAACACATAAGGGCCTTGAAGGCTGTTACCACACCCTCCTTGTCTAC CTGATAGGGCTGTGCATTTTATCCTCAGTTGCTGGAGCCCTTTTGCCAACCAGTTTTCCAGTGGATTTATGTAAAGGCAT TGCTATAACACTGCAAGGCATCTGGTTCTATCAGACTGCCTTTGTTCTTTATGGCCCCATGCTACCGGATGGTTGTAAGA TAAGGGATAATAGTATCACATGTCATTCAGATGACAGTGAGGTTCGGGGCGAATTGCTTGCTAGCTTTCAGCTCTTTGTT GCTGTTCTTGTGGTCTTTGTGGGAACTTTAGCATCCTATGCTTATGCAGCTTCAAAATATGGGAACTCTCAAGTTACTAA CTTGCACATAATTCAGGAAGGATTAGATCAAGACTGA
Protein sequence (LotjaGi2g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSFKGHALPGTLFFVVGVWHIWCSVVRYWRNPKTFRVRVWNPVPGFNGRLKHLELYVIAIGAFIDMCIELFYSTHLKIF VGGVLNPSHMNDFEHSGMLFMFFILGVVIILTEKTRFVPLPEGALCLIAAAAFCTEYLLFYFHSTTHKGLEGCYHTLLVY LIGLCILSSVAGALLPTSFPVDLCKGIAITLQGIWFYQTAFVLYGPMLPDGCKIRDNSITCHSDDSEVRGELLASFQLFV AVLVVFVGTLASYAYAASKYGNSQVTNLHIIQEGLDQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 263 | 263 | 4.7E-146 | – | |
| PANTHER | 1 | 263 | 263 | 4.7E-146 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 10 | 27 | 18 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Phobius | 31 | 55 | 25 | - | – | |
| Phobius | 56 | 75 | 20 | - | – | |
| TMHMM | 56 | 73 | 18 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| TMHMM | 93 | 111 | 19 | - | – | |
| Phobius | 95 | 112 | 18 | - | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| TMHMM | 123 | 142 | 20 | - | – | |
| Pfam | 123 | 254 | 132 | 1.1E-40 | ||
| Phobius | 124 | 142 | 19 | - | – | |
| Phobius | 143 | 153 | 11 | - | – | |
| Phobius | 154 | 175 | 22 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 176 | 186 | 11 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 187 | 207 | 21 | - | – | |
| Phobius | 208 | 231 | 24 | - | – | |
| Phobius | 232 | 256 | 25 | - | – | |
| TMHMM | 233 | 255 | 23 | - | – | |
| Phobius | 257 | 278 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0341600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…