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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0342300 |
| Transcript ID | LotjaGi2g1v0342300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein PAM68, chloroplastic; TAIR: AT4G19100.1 PAM68-like protein (DUF3464); Swiss-Prot: sp|O49668|PAM68_ARATH Protein PAM68, chloroplastic; TrEMBL-Plants: tr|I3SKA4|I3SKA4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0342300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81950825..81956540) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGCTTCTAGGCTCTAGCTACCCAGATCAGATTTAGAAAAAATAATAAAAAGAAAGAAATAAAGTTGAAGTTGAAAAC CACTGTTGAGGGTGCATTTAGTTTAATGTAGAGAGAGCATCCATTTCCATTAATCCCTACCAATACCCATGGCTGAACTG GTTTTCCCCGAGGCAGTAACCGCCCTCTTCCTCCATCACCTTCACTTCTCTCTCTCTCTCTAAATGCCAGTTTCTCTCTC CTCGATTCAACCCTCTTTCCTCAAACCCCAATCCCAAATGATGAGCGTTCCTCCGCCGCCGGTGATGTGGCCGCCGCCGT TCACGGTGTCGCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACCTCAAGGCGGGTCTCTCTGTCCCTCCC GACCTCCTCGTACCCATTCGGAAAAGTCTTCAGTTGATGTCTCATCCTCACTCTTCTCGTAAGCCACCACCACCCCTTCA TCATCAACGTTTACCTCTTTTTTTCCATCTGGGTATGCTAAAGTTTGAATCTTTTTGCAGTTGGGTATTATGGGAAGAAG ATTGACCCAGAACCAGGAAGGTGCAGGAGAACCGATGGCAAGAAATGGAGGTGTGCAAAGGATGCTCACCCTGACTCCAA ATACTGTGACCGCCACATGATACGTCGCCGGTACCGTTCAAGAAAGCCTGTGGAATCTCAACCTCAACCTTCTTCTTCTT CTTCTTCTTCTTCACAACTTGCTGCTTCCACTGCTGGGTCTGGAAGCACTGCAAAAACTGCATCTGCAGCTGTAACCACT TTCCAAAACAACCTCCCCTTGCACACCAATGGTGCCCGTGAAGGTTTCAGCTTCACCCTTGGGAACTCTACCTCCCAACT TCACATGGACACTTCCAAGAAACCTTACAGGTAGGTATTGTTTTCATTTCATCCATTAACTAACTGATTTATTCATTGAT TGAACCGTTAGTGGTGTGTATGTTTTTTTGTTTATTATGTTCTAATAGTAGTTGTTTGTATGGTTCCTATGTGTTTATTA GGGTGTTTTAACTTTTGGGTTGGCGAAATGATTGCCATAATTTCTGGTGGAGTGTTATATTCTTTCGCCTTCCGCAATAG ATGGTGTGTTATGATGTTATGTAGCAAATATGGTTGCTGTGATGGTAAGTTACCTAACATGTGGATCCTTATCATGTGTG GGATATGAGTAAGGTGGAAGTCATCTGATCATTATTTTTCAAATTAGATTTGCTTTTCATTCCATTTGATTTCAATTTGT TTTGAGTTTGAAATAATGAAATGCTAATTGTCTATGCGACTATGCCCTTTAGAAATGGCACATGAGTTTGGCTTGATTTG GTAACATTATTTCTGGATTGGATTTATTTAGGCGTTGCAGCGTATCATCGGAAATTTATTTATCTCTTGATATTTTCTTT TGTAACTTGAATCCCCTCATGCTGTTTATTTGAGATCACAGCTTTGCACCCCAGGTTCACTTCCAAGATTTTGTTGAAAT CCTTTTGACATTTATTTTAAAGCATATACAGTGCATGATCTGCCTTGTCGGAGGGTGAACTGAAGTGTATGGGAATGATT TAATAAAATTGGAAGGGATTTAACGATGAAGTAATAGCAGGACAATTAATGTTTGTGAGGTACAGTTAAAGAAATTAACT AGAGGTAACTTCTTGTTGGTTGAGTGATGTATAGTTGACAATTATCCAGAAATGGTGGTTCAAAGCTTTGAACTGGTGGT TGGGATCCGTTTTGTAGGAAAATTTGAAACATGTTTATTGCTTTTTAGTTGTCTGGTACTCTGGTGATATAATTTCTCTA TTCTGGGCCATCAGTGAGCTGTCATGTAATCTTTCATTTCCTCAACTGTCCTTCTTTTTCCTCTCATTCTCGTTTTCTTC CGTTACTTTGAGATAGAGCTCACTGGACACTACTTTTGTAGCCTTGTCAGTGTTTTTTTTTGGGTGTGCTGGCAGAAGCT GGTATTGATCCTGTGTGGATGACTAAGAAAATCATGCACTGGAAAGGATATTGTAAAAGTAAGATAAGTGGAGCAAACTA GAGCCAGGGGGAGCAAGAGTTGTATTTTAGTAGTTTAAATGGATATTTTTAACTTTTTATAAGGGACCTTTGGGATTTGA GGTATGTAATGGATATAAAACTTGTATTTATGACAAAGGAATGAGTGAGCATCATTATTGCCTTATGCAGAATGTATTAG TAGTTTTCTTCTTTAAAGAGCCTAATTGGTTGCTTCAATTCATAGCTTTAGTAACCCCTGCCCTGCCTCTAACCATTTGC ATCCATCCATAACTTTTCATAAGTTTTCTAAAATATTGTTAAAAGTTGTTTCTAATTTCCTATTATACATAATTGAATTA AGTGTAGCATCATGATGTTTACTTAACACTCCATAGGTTTGAACTGACCAACGAAGCAGAGGAGCACAGCCTCTTACAGA AAGATCTGGGAAGTGTGAAGTATCAAGGTTATGACTTTACCTCAGATGGTATGTGGTCTCACATGCATCAGATTCCGTCA AACACTATTTCAGAATCAAGGAGTGGTTCTGCTATAGTTGGCAACTGCTTCCAACAGCGAACAACCCGAGATGCTGAACT GTTGAACCTTGACACTGCAAGGTCCAAGGAACTTGCATTTAGTGGCCAGGTATGTTCAGCAGGGCGCTTGAAACAGGAAT ATCAGTCCCCTCAGTCTCTCTTCAGTGACTGGCACTGGAAGAAGGATTTAGGTTCTTCTGCCACTGCGTATAGGCCCAAC AAGGATTTCAACTGCAACCCAGATATCAATGCTGATTCAAGTGGTTCTTTATGAGGCTTTCAAGGAGTTTTCTGATTTTA ATTTTATCCCACGATATCTCAGTATCCACCTGGTCCCCCCCCCCCCCACCCTTTGTTTTCCCCCCAACCAGTGAAAATAT AAATCCTCAGGCAGTGCTAAATTTATCACCCGTAGCGTTCAGATATCTGAGGAATCATGGTTTAATTTTCAAGCTTCAAT GTGTTGTTCTGTTATATATCTTATATACTTGGAAGAGTTATGCTTTCTTCACCCTTAAACGTGTAATATTTGACTGTGGT TTGGTTTCTCTTAATTGTAGCGTTCAGTTTGACTCTTGTCTTCTATGATTTAAGTCCCATGATTGTTAGACACATGGTGC TATTCTCAGGCAGCAAGGTTAATTATTATTGCATGAATGGCTAAACATTCTTTAACATGGCATTTTTGAGGTGTGATCAA CCATGCTCATGTTATGGAATTTTAAAAGTCAGGTGGTGATATCAGGTGACATGATGGTGCATGTTTAGTAACCCTTTACA ATTACTTATTCTGAAGTCAGAATTAATTCTGACCAGAAACTTCTATGAGTAGCTTCTGAGTTTTCGAATTGATTCTAATG CAAGAAAAACTAATCCGAACATGCTATATCTCTCCTAAAGTAAGGGGAAGAGAGGCAAATGGTGCTTTGTTAGTTTGTTG CATTGAATTTGAATAGTATTGCAGTGAAGTGGTGCTTTCAAAGCTCCTCTATGCACAGGGGTTATAAATGAGGAGTGCAG TAGTTGTTGGCTTATTAATGTTTCAATTTGAAGGAGAGCATTTCGAGGTATGAAGGCGGTGTTGGTGTTTCATAATGAGT TTTTCGAGCTCAAGGTTTTTTCTTGTTCTTTTCCCTTATTTTGTAGTCTTAACTCATGCGTCTTACTCCATTTTTACCCC TTGAGTTAAGTTTTATTATGGAAGTAAGGTAATGGAATCACCTTATACAAAGATCATCTGTTATAGCCCGTTTTTTTATT ATTTGTCCAAAGTAGAAATTATAACTATCTTTTAAAATTGTTTTTGTCGTTTGTAATAAAAAATTACTTATTTTACATGA AAATAAAATACATAACAAACAAAAATTATTTAAAAAAACTTACAAAGGGTGATTCTAAAATGTGTAATGTTGATCTTGTG ATCGATGCTAATTGTTAGCGTAGGTTTAGCCGATTCTAAAGTGACACTACATGCTTGAGATGACCAAGGCTATTGCCCTT TCATTAGCACACTCTAAGTTGTATAAATAAAATCTATAATTCATGTTATGCACACAATAATCAGTAAAATATTTATTTCT TTAATTAGTCTTTTCATTTTACTAAAGAGGATGGGAGATGACTACACTACAGGTACATTTAAATAACTTTTAAATTGTAA AAAATTAATGTGCATATTCCTACCATTTTCTTTTTCTTTTCTAAGTTTTTAATTTTTATATTCGAGACGCAAAAAAATGT CATTATTTGAGAACAATACGTCGACGTTTCAAGATCTAAAGATGCAGCAGGCAAAATTCGGAAGTGGCTGAATATCTATC TAATTCTCACAACCTTATCCTAACTTGTTCCTTTCTCTTTTCTGTGTTTCTACTTGACTTTCTATTTTCTACTCAAAACT CAAACACCATGTGTGGTTCTGCTGATCCACCTATGTAATCTTCAACCATCATCAACACCATGGCTGCAACTGCCCCCACA CCATTTCTTCACACGGTTCTCTCTCTTTTTCTGTCTCCATTATTGGACTAATTATAATTATATATCTTGTCAAATATTCT AAATGTGATTCTAATTGCTAGTATGTTGTTTCACTGCAGCAAGTTAGGAACAATAACATCTTGACACTCACAAAGATCAA TTATGTCAGTGGAAATGTGAATTCTCAATTTCATCATCACATTCACTTCTCACACCTAGCACTTGTAAGAGCAACCAGGG GCCCCAAGGGGTTTGGGCCTGCCCCAAACAAAAGGAAGAAACCCAAGAAGCAGCTGAGAAAAGACAAAGAAGAAGAAGAT GATGATGATGATGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAGAGGGAGAAGGGAGTGATTCCTGAAGTGGTGAC AAACAGGATGATGAGCAGGATGGCATTCTCAGTGGGGATACCATTAGGTATTGGGCTTTTGTTTTTTCCATTCTTTTACT ATCTCAAGGTTGGGTTGAAAATTGATGTGCCCACTTGGGTGCCCTTCATTGTGTCCTTCATCTTCTATGGGTCTGCTTTG TTGGGGGTGAGTTATGGGATTGTGTCCACTAGTTGGGATCCATTGAGGGAAGGGTCCCTTTTGGGCTGGAATGAGGCCCA GAAGAATTGGCCTGTTTTTTGGCAATCCCTTCGGGGTGAATCTCGCAAGGAATAGCCTATAGACTTTAGCTTATATATAA TTTATTTTTGACCATGACATTGGCTTGATAATGTAGCTTTCATCTTAAACTAGTTTGAGCGTGTTTCTTTCTCCATTTAT ATCAACATAAGAAATAATTTTACATATGCAGGAAGCAGAATTTTGTAGTATATTCAATAGAAATTTAATCAATTTATTAT TTATATTGCTCAAAATGTTTAAGGAAACATATTGTCTCAAAATCTATTGGTGTAGATTTGTACTTGTTATGTATTATGTA TAGGCAAGGCTTGGTTGGGTTGATAATTTATGGGTTGACAAAAAATCCTATAAAGGGTGATCGTAGCCCAAAAATTTACA TACTTATTGAATATATTTAGATTGAGTTAAAATATAATAAAATGCTTTTTTTTTTTGTTACAACTGGAAAAGAAAAGAAA CAACAAACTAAAAGACTACATCCTGACAAAGCAAGG
CDS sequence (LotjaGi2g1v0342300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAACTGCCCCCACACCATTTCTTCACACGCAAGTTAGGAACAATAACATCTTGACACTCACAAAGATCAATTA TGTCAGTGGAAATGTGAATTCTCAATTTCATCATCACATTCACTTCTCACACCTAGCACTTGTAAGAGCAACCAGGGGCC CCAAGGGGTTTGGGCCTGCCCCAAACAAAAGGAAGAAACCCAAGAAGCAGCTGAGAAAAGACAAAGAAGAAGAAGATGAT GATGATGATGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAGAGGGAGAAGGGAGTGATTCCTGAAGTGGTGACAAA CAGGATGATGAGCAGGATGGCATTCTCAGTGGGGATACCATTAGGTATTGGGCTTTTGTTTTTTCCATTCTTTTACTATC TCAAGGTTGGGTTGAAAATTGATGTGCCCACTTGGGTGCCCTTCATTGTGTCCTTCATCTTCTATGGGTCTGCTTTGTTG GGGGTGAGTTATGGGATTGTGTCCACTAGTTGGGATCCATTGAGGGAAGGGTCCCTTTTGGGCTGGAATGAGGCCCAGAA GAATTGGCCTGTTTTTTGGCAATCCCTTCGGGGTGAATCTCGCAAGGAATAG
Protein sequence (LotjaGi2g1v0342300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATAPTPFLHTQVRNNNILTLTKINYVSGNVNSQFHHHIHFSHLALVRATRGPKGFGPAPNKRKKPKKQLRKDKEEEDD DDDEEEEEEEDEEEEREKGVIPEVVTNRMMSRMAFSVGIPLGIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFIFYGSALL GVSYGIVSTSWDPLREGSLLGWNEAQKNWPVFWQSLRGESRKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 112 | 112 | - | – | |
| PANTHER | 31 | 201 | 171 | 7.6E-84 | ||
| PANTHER | 31 | 201 | 171 | 7.6E-84 | – | |
| MobiDBLite | 53 | 101 | 49 | - | – | |
| Pfam | 54 | 195 | 142 | 2.2E-53 | ||
| Coils | 68 | 95 | 28 | - | – | |
| MobiDBLite | 77 | 97 | 21 | - | – | |
| Phobius | 113 | 133 | 21 | - | – | |
| TMHMM | 115 | 134 | 20 | - | – | |
| Phobius | 134 | 144 | 11 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 145 | 167 | 23 | - | – | |
| Phobius | 168 | 203 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0342300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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