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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0344000 |
| Transcript ID | LotjaGi2g1v0344000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid permease family protein; TAIR: AT1G31830.1 Amino acid permease family protein; Swiss-Prot: sp|Q9C6S5|PHSB_ARATH Probable polyamine transporter At1g31830; TrEMBL-Plants: tr|I3SAT1|I3SAT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0344000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82103573..82106535) extracted from Lotus japonicus Gifu genome v1.2.
AGCGAAGCTAGCGTGAATTGTTTTCCTCTATAAAAAAGTTCCTCTTCTTCTTCCTCTTCGCTTCCACGCTGAAACCTTGC ATTGTAGCAGACATGGTAGCTTTCCTTCAACTTCGATTTTCACCACGGAGGATGCTCTCTCCTCTACCCTGACAGGGTAA GCAAACATTTCATGGTTGGTTCGCTAACCTTTTCTCACTACCATTTCTCAGCTTTTCTTCTTTCTGTTAATGGGGTTCCA ATTTTCATTGAATTAATAACTTCTTCTTAGTTTTTTCCATAAAGGGGTTTGTTAATTTGATTGAGGGGGCTTGTTCTTCT TATTTCTGATTGGTCATTTGAGATCTGTGTCCAAGATCCGTTTTATTTTTTGGGGTTTGTGTATGTGTTTGATTCATCAC AGTCTCTGAAATTGAAGTTTTCGTTTTACTTTATTTTGTGATGTACCCTTTTGTTGATTCTGTGAATAATTGAAGGAGCT CTTGCTGCTAAAATTGACAAAGCTGGTGTGGTGTCTTCCTGATTTTTATTTCATAGCTTGAGACTTGAAACTCTTTGATC CTTTGTTTGGCAATGTTATCTTTGAACTGTGTTTTTGGTGTATGTATAAGCTTTTGGTTTTTTGATTGCAGAAATTGAGG ACTACAGCTAATACTAGACAACAAGCTTGTTTTGCTATGAGGGAGTTCACTAGGGGTGAAGAGTATGTAACCATTGGTGA ATTCCCTTCTTCCAAGACTAATCACATGAAGAAAGTTTCAGTTCTTCCTCTTGTGTTCCTCATCTTCTATGAGGTTTCAG GGGGTCCTTTTGGTGTGGAGGATACTGTGCATGCTGCTGGTCCTCTGCTGTCCCTGCTTGGCTTCTTGTTGTTCCCACTC ATATGGAGTGTTCCTGAGGCTTTGATTACTGCTGAGATGGGTACCATGTTCCCTGAAAATAGTGGTTATGTGGTTTGGGT TTCATCTGCTTTGGGTCCTTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTGAGTGGGGTGATAGACAATGCTTTGT ACCCAGTTCTGTTTCTTGATTATCTTAAGTCAGCAGTCCCTGCTGTAGGTGGTGGCTTACCTAGAGTTCTTGCAACCTGG GGTCTTACAATAATTCTTACTTACTTGAACTATAGGGGTTTAATCATTGTGGGATGGGTTGCTGTTGCTTTGGGGATTTT CTCACTCCTTCCTTTTGTGGTTATGGGGTTTATGTCAATTCCAGACATAGAACCTTCAAGATGGTTAGGGGCAAATCTAC ATGATGTTGACTGGAATTTGTATTTGAATACTCTATTCTGGAATCTTAATTATTGGGACTCCATAAGTACTCTTGTTGGA GAAGTGGAAAATCCTAAGAAAACTCTTCCAAAAGCATTGTTCTATGCTGTGATCCTAGTTGTTCTGGGATACTTCTTCCC GCTTCTAATTGGTACCGGTGCCGTTCCTGTCAAGCGTGAGTTGTGGACTGATGGTTACTTCTCGGAGATTGCTTTGATTA TCGGAGGAGTATGGCTGAGATGGTGGCTTCAGGCTGCTGCAGCAATGTCAAACATGGGAATGTTCGTTGCTGAAATGAGC AGCGACTCTTTCCAGCTGCTGGGGATGGCTGAAAGGGGAATGTTGCCTGAGTTCTTCAAGATAAGGTCTCGCCATGGAAC CCCTCTTATCGGAATACTTTTCTCGGCCTCCGGTGTTCTCTTACTGTCATGGCTGAGTTTTCAAGAAATTGTGGCTGCAG AAAATTTCTTGTACTGTCTTGGAATGATTCTGGAGTTCAATGCATTCATTTTGTTGAGGATCAGATACCCGAACGCGCCT CGACCTTACAAGATACCAGGAGGGACAGTAGGAGCAGTTCTTATGTGTATCCCTCCTACAATACTGATTGGTGTTGTGCT GTATTTCTCCACCCTCAAAGTGTTGGTTATAAGCCTCATTGCTGTGGCGATTGGCCTTGTGATGCAGCCGTGTCTCAAAT ATGCGGAGAAAAAGAGATGGATGAAGTTCTCCCAGAATTCTGAGCTCACTGATATAAATGATGAGGGCTCTCAATTGGTG ACTTAATTTTTTCTTGTTTAAAAACAATAATGTGAATGAGATCTACTCTTTAAGGTTTTTAGCATAATAGTTAAGTTTCA ATCTTTGAAGTGCAGTTTGTATCCCATGCTTTTGGCACTTATAGCTGTTTGTCTTTGTTGTTTGATTATAGTTGAGATGA CAATTAGAAACTAGGAAGCTAGTATTTAGAATGTCTTGGGAAATAAATTTGTTTGGTTTCCCTGTATGAAATCTGTTTTT CAGAAATTTTATATATTTTGAACATTCACAAAATGATGCTCAGCAAATTGTTCAAGCTGCCAACATGAAAATGTCTTAAA TACAGTGTTTATTGCACTAGAAGGGTGTACAAGATTTTGGCTCAGTTACAGTTAGCAAGGACTAATCACTTCACCTTATA AAATTTTATGTTCGATTTTCACTGTGAGGACTGTATTGTTAGGCGATTTGGAAATAACCTGCAGTTTCAAAGCCATCTCT TTGGCATGGGGTGGTGATGCAAGTTGAAGTCATCCACCAAACTTTCTGAAATCACATCAGAAGGGGTATACAACTTTATT AAATTTTTGTCAACGTGAAAAATTATGCACATGTTAATTGGACGGGGCGGGACATAAGTATCCCTTATTCCCGCCCAAAT CGAGCATTTAGATGAACGAAAGCAGCCATGGCGGGGTTTGTGGAACAACGTCGAAGCCCGCCCTTCTTTTGGATGGGTCC ACGCGCCAGCTGGAAGAATTCCTTTAGTTTTGTCTTATATGTATAGAGGCTTGGGCCCCGATTGTCAGGCCCAAGTACAG AGAAAGTCCACGTTATGACCATTCCCTCTATAAAAGGAGAGGTCAACCCCTTGTAAAAAGCACATTTCGAACATTTAATG AGA
CDS sequence (LotjaGi2g1v0344000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTGAGGACTACAGCTAATACTAGACAACAAGCTTGTTTTGCTATGAGGGAGTTCACTAGGGGTGAAGAGTATGT AACCATTGGTGAATTCCCTTCTTCCAAGACTAATCACATGAAGAAAGTTTCAGTTCTTCCTCTTGTGTTCCTCATCTTCT ATGAGGTTTCAGGGGGTCCTTTTGGTGTGGAGGATACTGTGCATGCTGCTGGTCCTCTGCTGTCCCTGCTTGGCTTCTTG TTGTTCCCACTCATATGGAGTGTTCCTGAGGCTTTGATTACTGCTGAGATGGGTACCATGTTCCCTGAAAATAGTGGTTA TGTGGTTTGGGTTTCATCTGCTTTGGGTCCTTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTGAGTGGGGTGATAG ACAATGCTTTGTACCCAGTTCTGTTTCTTGATTATCTTAAGTCAGCAGTCCCTGCTGTAGGTGGTGGCTTACCTAGAGTT CTTGCAACCTGGGGTCTTACAATAATTCTTACTTACTTGAACTATAGGGGTTTAATCATTGTGGGATGGGTTGCTGTTGC TTTGGGGATTTTCTCACTCCTTCCTTTTGTGGTTATGGGGTTTATGTCAATTCCAGACATAGAACCTTCAAGATGGTTAG GGGCAAATCTACATGATGTTGACTGGAATTTGTATTTGAATACTCTATTCTGGAATCTTAATTATTGGGACTCCATAAGT ACTCTTGTTGGAGAAGTGGAAAATCCTAAGAAAACTCTTCCAAAAGCATTGTTCTATGCTGTGATCCTAGTTGTTCTGGG ATACTTCTTCCCGCTTCTAATTGGTACCGGTGCCGTTCCTGTCAAGCGTGAGTTGTGGACTGATGGTTACTTCTCGGAGA TTGCTTTGATTATCGGAGGAGTATGGCTGAGATGGTGGCTTCAGGCTGCTGCAGCAATGTCAAACATGGGAATGTTCGTT GCTGAAATGAGCAGCGACTCTTTCCAGCTGCTGGGGATGGCTGAAAGGGGAATGTTGCCTGAGTTCTTCAAGATAAGGTC TCGCCATGGAACCCCTCTTATCGGAATACTTTTCTCGGCCTCCGGTGTTCTCTTACTGTCATGGCTGAGTTTTCAAGAAA TTGTGGCTGCAGAAAATTTCTTGTACTGTCTTGGAATGATTCTGGAGTTCAATGCATTCATTTTGTTGAGGATCAGATAC CCGAACGCGCCTCGACCTTACAAGATACCAGGAGGGACAGTAGGAGCAGTTCTTATGTGTATCCCTCCTACAATACTGAT TGGTGTTGTGCTGTATTTCTCCACCCTCAAAGTGTTGGTTATAAGCCTCATTGCTGTGGCGATTGGCCTTGTGATGCAGC CGTGTCTCAAATATGCGGAGAAAAAGAGATGGATGAAGTTCTCCCAGAATTCTGAGCTCACTGATATAAATGATGAGGGC TCTCAATTGGTGACTTAA
Protein sequence (LotjaGi2g1v0344000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLRTTANTRQQACFAMREFTRGEEYVTIGEFPSSKTNHMKKVSVLPLVFLIFYEVSGGPFGVEDTVHAAGPLLSLLGFL LFPLIWSVPEALITAEMGTMFPENSGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAVPAVGGGLPRV LATWGLTIILTYLNYRGLIIVGWVAVALGIFSLLPFVVMGFMSIPDIEPSRWLGANLHDVDWNLYLNTLFWNLNYWDSIS TLVGEVENPKKTLPKALFYAVILVVLGYFFPLLIGTGAVPVKRELWTDGYFSEIALIIGGVWLRWWLQAAAAMSNMGMFV AEMSSDSFQLLGMAERGMLPEFFKIRSRHGTPLIGILFSASGVLLLSWLSFQEIVAAENFLYCLGMILEFNAFILLRIRY PNAPRPYKIPGGTVGAVLMCIPPTILIGVVLYFSTLKVLVISLIAVAIGLVMQPCLKYAEKKRWMKFSQNSELTDINDEG SQLVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 13 | 481 | 469 | 4.0E-283 | – | |
| PANTHER | 13 | 481 | 469 | 4.0E-283 | – | |
| PIRSF | 23 | 482 | 460 | 2.8E-74 | – | |
| Gene3D | 41 | 480 | 440 | 1.2E-46 | – | |
| Phobius | 43 | 63 | 21 | - | – | |
| TMHMM | 44 | 63 | 20 | - | – | |
| Pfam | 49 | 422 | 374 | 7.0E-34 | ||
| Phobius | 64 | 68 | 5 | - | – | |
| Phobius | 69 | 93 | 25 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 94 | 104 | 11 | - | – | |
| Phobius | 105 | 121 | 17 | - | – | |
| TMHMM | 107 | 126 | 20 | - | – | |
| Phobius | 122 | 148 | 27 | - | – | |
| Phobius | 149 | 173 | 25 | - | – | |
| TMHMM | 151 | 173 | 23 | - | – | |
| Phobius | 174 | 179 | 6 | - | – | |
| Phobius | 180 | 204 | 25 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 205 | 223 | 19 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 224 | 244 | 21 | - | – | |
| Phobius | 245 | 255 | 11 | - | – | |
| Phobius | 256 | 278 | 23 | - | – | |
| TMHMM | 257 | 279 | 23 | - | – | |
| Phobius | 279 | 289 | 11 | - | – | |
| TMHMM | 289 | 306 | 18 | - | – | |
| Phobius | 290 | 307 | 18 | - | – | |
| Phobius | 308 | 352 | 45 | - | – | |
| TMHMM | 352 | 371 | 20 | - | – | |
| Phobius | 353 | 371 | 19 | - | – | |
| Phobius | 372 | 376 | 5 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 377 | 398 | 22 | - | – | |
| Phobius | 399 | 409 | 11 | - | – | |
| Phobius | 410 | 433 | 24 | - | – | |
| TMHMM | 411 | 433 | 23 | - | – | |
| Phobius | 434 | 438 | 5 | - | – | |
| TMHMM | 438 | 456 | 19 | - | – | |
| Phobius | 439 | 459 | 21 | - | – | |
| Phobius | 460 | 485 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0344000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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