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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0344000 |
| Transcript ID | LotjaGi2g1v0344000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid permease family protein; TAIR: AT1G31830.1 Amino acid permease family protein; Swiss-Prot: sp|Q9C6S5|PHSB_ARATH Probable polyamine transporter At1g31830; TrEMBL-Plants: tr|I3SAT1|I3SAT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0344000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82104296..82106134) extracted from Lotus japonicus Gifu genome v1.2.
GTCTCTGAAATTGAAGTTTTCGTTTTACTTTATTTTGTGATGTACCCTTTTGTTGATTCTGTGAATAATTGAAGGAGCTC TTGCTGCTAAAATTGACAAAGCTGGTGTGGTGTCTTCCTGATTTTTATTTCATAGCTTGAGACTTGAAACTCTTTGATCC TTTGTTTGGCAATGTTATCTTTGAACTGTGTTTTTGGTGTATGTATAAGCTTTTGGTTTTTTGATTGCAGAAATTGAGGA CTACAGCTAATACTAGACAACAAGCTTGTTTTGCTATGAGGGAGTTCACTAGGGGTGAAGAGTATGTAACCATTGGTGAA TTCCCTTCTTCCAAGACTAATCACATGAAGAAAGTTTCAGTTCTTCCTCTTGTGTTCCTCATCTTCTATGAGGTTTCAGG GGGTCCTTTTGGTGTGGAGGATACTGTGCATGCTGCTGGTCCTCTGCTGTCCCTGCTTGGCTTCTTGTTGTTCCCACTCA TATGGAGTGTTCCTGAGGCTTTGATTACTGCTGAGATGGGTACCATGTTCCCTGAAAATAGTGGTTATGTGGTTTGGGTT TCATCTGCTTTGGGTCCTTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTGAGTGGGGTGATAGACAATGCTTTGTA CCCAGTTCTGTTTCTTGATTATCTTAAGTCAGCAGTCCCTGCTGTAGGTGGTGGCTTACCTAGAGTTCTTGCAACCTGGG GTCTTACAATAATTCTTACTTACTTGAACTATAGGGGTTTAATCATTGTGGGATGGGTTGCTGTTGCTTTGGGGATTTTC TCACTCCTTCCTTTTGTGGTTATGGGGTTTATGTCAATTCCAGACATAGAACCTTCAAGATGGTTAGGGGCAAATCTACA TGATGTTGACTGGAATTTGTATTTGAATACTCTATTCTGGAATCTTAATTATTGGGACTCCATAAGTACTCTTGTTGGAG AAGTGGAAAATCCTAAGAAAACTCTTCCAAAAGCATTGTTCTATGCTGTGATCCTAGTTGTTCTGGGATACTTCTTCCCG CTTCTAATTGGTACCGGTGCCGTTCCTGTCAAGCGTGAGTTGTGGACTGATGGTTACTTCTCGGAGATTGCTTTGATTAT CGGAGGAGTATGGCTGAGATGGTGGCTTCAGGCTGCTGCAGCAATGTCAAACATGGGAATGTTCGTTGCTGAAATGAGCA GCGACTCTTTCCAGCTGCTGGGGATGGCTGAAAGGGGAATGTTGCCTGAGTTCTTCAAGATAAGGTCTCGCCATGGAACC CCTCTTATCGGAATACTTTTCTCGGCCTCCGGTGTTCTCTTACTGTCATGGCTGAGTTTTCAAGAAATTGTGGCTGCAGA AAATTTCTTGTACTGTCTTGGAATGATTCTGGAGTTCAATGCATTCATTTTGTTGAGGATCAGATACCCGAACGCGCCTC GACCTTACAAGATACCAGGAGGGACAGTAGGAGCAGTTCTTATGTGTATCCCTCCTACAATACTGATTGGTGTTGTGCTG TATTTCTCCACCCTCAAAGTGTTGGTTATAAGCCTCATTGCTGTGGCGATTGGCCTTGTGATGCAGCCGTGTCTCAAATA TGCGGAGAAAAAGAGATGGATGAAGTTCTCCCAGAATTCTGAGCTCACTGATATAAATGATGAGGGCTCTCAATTGGTGA CTTAATTTTTTCTTGTTTAAAAACAATAATGTGAATGAGATCTACTCTTTAAGGTTTTTAGCATAATAGTTAAGTTTCAA TCTTTGAAGTGCAGTTTGTATCCCATGCTTTTGGCACTTATAGCTGTTTGTCTTTGTTGTTTGATTATAGTTGAGATGA
CDS sequence (LotjaGi2g1v0344000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGAGTTCACTAGGGGTGAAGAGTATGTAACCATTGGTGAATTCCCTTCTTCCAAGACTAATCACATGAAGAAAGT TTCAGTTCTTCCTCTTGTGTTCCTCATCTTCTATGAGGTTTCAGGGGGTCCTTTTGGTGTGGAGGATACTGTGCATGCTG CTGGTCCTCTGCTGTCCCTGCTTGGCTTCTTGTTGTTCCCACTCATATGGAGTGTTCCTGAGGCTTTGATTACTGCTGAG ATGGGTACCATGTTCCCTGAAAATAGTGGTTATGTGGTTTGGGTTTCATCTGCTTTGGGTCCTTATTGGGGGTTTCAGCA AGGTTGGATGAAATGGCTGAGTGGGGTGATAGACAATGCTTTGTACCCAGTTCTGTTTCTTGATTATCTTAAGTCAGCAG TCCCTGCTGTAGGTGGTGGCTTACCTAGAGTTCTTGCAACCTGGGGTCTTACAATAATTCTTACTTACTTGAACTATAGG GGTTTAATCATTGTGGGATGGGTTGCTGTTGCTTTGGGGATTTTCTCACTCCTTCCTTTTGTGGTTATGGGGTTTATGTC AATTCCAGACATAGAACCTTCAAGATGGTTAGGGGCAAATCTACATGATGTTGACTGGAATTTGTATTTGAATACTCTAT TCTGGAATCTTAATTATTGGGACTCCATAAGTACTCTTGTTGGAGAAGTGGAAAATCCTAAGAAAACTCTTCCAAAAGCA TTGTTCTATGCTGTGATCCTAGTTGTTCTGGGATACTTCTTCCCGCTTCTAATTGGTACCGGTGCCGTTCCTGTCAAGCG TGAGTTGTGGACTGATGGTTACTTCTCGGAGATTGCTTTGATTATCGGAGGAGTATGGCTGAGATGGTGGCTTCAGGCTG CTGCAGCAATGTCAAACATGGGAATGTTCGTTGCTGAAATGAGCAGCGACTCTTTCCAGCTGCTGGGGATGGCTGAAAGG GGAATGTTGCCTGAGTTCTTCAAGATAAGGTCTCGCCATGGAACCCCTCTTATCGGAATACTTTTCTCGGCCTCCGGTGT TCTCTTACTGTCATGGCTGAGTTTTCAAGAAATTGTGGCTGCAGAAAATTTCTTGTACTGTCTTGGAATGATTCTGGAGT TCAATGCATTCATTTTGTTGAGGATCAGATACCCGAACGCGCCTCGACCTTACAAGATACCAGGAGGGACAGTAGGAGCA GTTCTTATGTGTATCCCTCCTACAATACTGATTGGTGTTGTGCTGTATTTCTCCACCCTCAAAGTGTTGGTTATAAGCCT CATTGCTGTGGCGATTGGCCTTGTGATGCAGCCGTGTCTCAAATATGCGGAGAAAAAGAGATGGATGAAGTTCTCCCAGA ATTCTGAGCTCACTGATATAAATGATGAGGGCTCTCAATTGTTGAGATGA
Protein sequence (LotjaGi2g1v0344000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREFTRGEEYVTIGEFPSSKTNHMKKVSVLPLVFLIFYEVSGGPFGVEDTVHAAGPLLSLLGFLLFPLIWSVPEALITAE MGTMFPENSGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAVPAVGGGLPRVLATWGLTIILTYLNYR GLIIVGWVAVALGIFSLLPFVVMGFMSIPDIEPSRWLGANLHDVDWNLYLNTLFWNLNYWDSISTLVGEVENPKKTLPKA LFYAVILVVLGYFFPLLIGTGAVPVKRELWTDGYFSEIALIIGGVWLRWWLQAAAAMSNMGMFVAEMSSDSFQLLGMAER GMLPEFFKIRSRHGTPLIGILFSASGVLLLSWLSFQEIVAAENFLYCLGMILEFNAFILLRIRYPNAPRPYKIPGGTVGA VLMCIPPTILIGVVLYFSTLKVLVISLIAVAIGLVMQPCLKYAEKKRWMKFSQNSELTDINDEGSQLLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 6 | 465 | 460 | 3.3E-282 | – | |
| PANTHER | 6 | 465 | 460 | 3.3E-282 | – | |
| PIRSF | 7 | 466 | 460 | 2.4E-74 | – | |
| Gene3D | 25 | 464 | 440 | 1.0E-46 | – | |
| Phobius | 27 | 47 | 21 | - | – | |
| TMHMM | 28 | 47 | 20 | - | – | |
| Pfam | 33 | 407 | 375 | 5.5E-33 | ||
| Phobius | 48 | 52 | 5 | - | – | |
| Phobius | 53 | 77 | 25 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 78 | 88 | 11 | - | – | |
| Phobius | 89 | 105 | 17 | - | – | |
| TMHMM | 91 | 110 | 20 | - | – | |
| Phobius | 106 | 132 | 27 | - | – | |
| Phobius | 133 | 157 | 25 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 158 | 163 | 6 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 164 | 188 | 25 | - | – | |
| Phobius | 189 | 207 | 19 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 208 | 228 | 21 | - | – | |
| Phobius | 229 | 239 | 11 | - | – | |
| Phobius | 240 | 262 | 23 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 263 | 273 | 11 | - | – | |
| TMHMM | 273 | 290 | 18 | - | – | |
| Phobius | 274 | 291 | 18 | - | – | |
| Phobius | 292 | 336 | 45 | - | – | |
| TMHMM | 336 | 355 | 20 | - | – | |
| Phobius | 337 | 355 | 19 | - | – | |
| Phobius | 356 | 360 | 5 | - | – | |
| TMHMM | 360 | 382 | 23 | - | – | |
| Phobius | 361 | 382 | 22 | - | – | |
| Phobius | 383 | 393 | 11 | - | – | |
| Phobius | 394 | 417 | 24 | - | – | |
| TMHMM | 395 | 417 | 23 | - | – | |
| Phobius | 418 | 422 | 5 | - | – | |
| TMHMM | 422 | 440 | 19 | - | – | |
| Phobius | 423 | 443 | 21 | - | – | |
| Phobius | 444 | 469 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0344000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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