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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0345800 |
| Transcript ID | LotjaGi2g1v0345800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase 1; TAIR: AT4G19460.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q59002|Y1607_METJA Uncharacterized glycosyltransferase MJ1607; TrEMBL-Plants: tr|A0A1J7G278|A0A1J7G278_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0345800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82263826..82265725) extracted from Lotus japonicus Gifu genome v1.2.
AATACTTTCTGACTCAGAAACTTAAGAAACCTTAGTCACATGAGTCCACATTTTTCCTTCAAAAGGAACCTGACAAATAA ATCAAACCCAAACCACTTGGTTCAGTGCATCCCTTCTTCACTAGTCCCTTTAGATACTTCCCAGCTTTCACCTCAGATAT CAAAGAACTCAAAACACAATAGTAATAAAAACCTATGCTCAAATTTCAGAACTCCTTTAAAAATGGCCGCCAACAACAAA TTCAAGAAGTCCAATTTGCCTTCTCATTTTAACTTCTGCATCACCCTTTTCTCCCTTCTCCTTTTCACCATCCCAGCTTA TTTCCTCATTCAAAACTCCACCACTATCTCCAAATGCACCCCTTTTACCAAGGCCTGGTCTGGTGATCTCCGTTTAGCCG AATTTGCATGGAACCACCTCCAATTTCTTGAACACAATCCTCCCCCCACACCTCTCAAAATTGCTGTCTTCACCAGAAAA TGGCCTATTGGAACAACCCCTGGTGGCATGGAACGCCACGCGCACACCCTTCACACTGCATTAGCAAACCGTGGCCATAG AGTTCACATCTTCACTTCTCCCCCACAAGATACAAAAAATCAACAAGCAGGGTCACCATCACCAACTTCACCTCACATCC ATTTCCATGAAGGGGAGCCAGGTAAGTGGCGCTACAACAAAGCATGGGAACAATTTCTGGTTGAAAACCAGCTAGAACCT TTCGATGTTGTTCACTCAGAAAGTGTGGCACTTCCTCACTGGCTCGCGCGTGATCTCCCGAACCTTGCAGTATCTTGGCA TGGCATAGCACTGGAGAGCTTGCAATCAAGCATTTTCCAGGACTTGGCTCTTGGTTCTGATGCGACAAGATCCCCTGATT TTGACAAAGGCTTACAAGGGGTTGTCCCTAAGATTCTGAATGAGATACGGTTCTTCAGGAAATACAGTCATCATGTTGCT ATCAGTGATAGTGTTGGTGAGATGCTAAGGGATGTGTACCAAATTCCAAGCAGAAGGGTCCATGTGATTCTCAATGGTGT TGATGGGGAAGATTTCAAACAAGATGTTGAGTTGGGAAAAGAGTTCAGAACCAAAATTGGGATCCCAAGCAATGCTAGTT TAGTACTTGGTGTGGCTGGAAGATTAGTGAGGGACAAAGGTCATCCTCTGCTTTATGAAGCATACTCCAGGCTAATAACA AAGCATCCCAATGTGTACTTGATTGTAGCTGGCTCTGGACCATGGGAGAATCGGTACAAGGATTTAGGGAACCAAGTTCT TGTTCTTGGATCAATGAATCCTTCCATGCTAAGAGGATTCTATAACGCGATTGACATTTTTGTGAATCCTACACTTAGAC CACAGGGGCTTGATCTTACTCTGATGGAGGCCATGATGAGTGGGAAGCCTCTTTTGGCATCAAGGTTTCCAAGCATTAAA GGTAGTATTGTGGTTGATGATGAATTTGGTTTCATGTTCTCTCCCAATGTGGAGTCCCTATTGGAGGGACTGGAAGCAGT GGTTAAGGAAGGGCAAGAGAGGCTAGGAAGGAGAGGGAAGGCATGCCGTGAATATGCAACTTCGATGTTTACAGCAACAA AGATGGCATTAGCATATGAGAGGCTATTCCTCTGCATAAAACATGATGCATTTTGTACCTATCCTTGAGGTTTATGCCAT AGATACAATTCTTTCTTTTTTCTATAGTTTTCTTTTGTGTTTTTTTTTCATTCACTGTGATATGATCACATGGTTCTATG AACATTTTCAACAACAATGTATCAATGTGATAACATAAATAAAGGTAATCAAAACTTCTCAGAATGGCATGATGAGTCTT TTTATGTTTCAAGCCTTCAAGCATTAACGAGAATTCCCAAAATAATTCAGGAAAAAGCAA
CDS sequence (LotjaGi2g1v0345800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCCACATTTTTCCTTCAAAAGGAACCTGACAAATAAATCAAACCCAAACCACTTGGTTCAGTGCATCCCTTCTTC ACTAGTCCCTTTAGATACTTCCCAGCTTTCACCTCAGATATCAAAGAACTCAAAACACAATAGTAATAAAAACCTATGCT CAAATTTCAGAACTCCTTTAAAAATGGCCGCCAACAACAAATTCAAGAAGTCCAATTTGCCTTCTCATTTTAACTTCTGC ATCACCCTTTTCTCCCTTCTCCTTTTCACCATCCCAGCTTATTTCCTCATTCAAAACTCCACCACTATCTCCAAATGCAC CCCTTTTACCAAGGCCTGGTCTGGTGATCTCCGTTTAGCCGAATTTGCATGGAACCACCTCCAATTTCTTGAACACAATC CTCCCCCCACACCTCTCAAAATTGCTGTCTTCACCAGAAAATGGCCTATTGGAACAACCCCTGGTGGCATGGAACGCCAC GCGCACACCCTTCACACTGCATTAGCAAACCGTGGCCATAGAGTTCACATCTTCACTTCTCCCCCACAAGATACAAAAAA TCAACAAGCAGGGTCACCATCACCAACTTCACCTCACATCCATTTCCATGAAGGGGAGCCAGGTAAGTGGCGCTACAACA AAGCATGGGAACAATTTCTGGTTGAAAACCAGCTAGAACCTTTCGATGTTGTTCACTCAGAAAGTGTGGCACTTCCTCAC TGGCTCGCGCGTGATCTCCCGAACCTTGCAGTATCTTGGCATGGCATAGCACTGGAGAGCTTGCAATCAAGCATTTTCCA GGACTTGGCTCTTGGTTCTGATGCGACAAGATCCCCTGATTTTGACAAAGGCTTACAAGGGGTTGTCCCTAAGATTCTGA ATGAGATACGGTTCTTCAGGAAATACAGTCATCATGTTGCTATCAGTGATAGTGTTGGTGAGATGCTAAGGGATGTGTAC CAAATTCCAAGCAGAAGGGTCCATGTGATTCTCAATGGTGTTGATGGGGAAGATTTCAAACAAGATGTTGAGTTGGGAAA AGAGTTCAGAACCAAAATTGGGATCCCAAGCAATGCTAGTTTAGTACTTGGTGTGGCTGGAAGATTAGTGAGGGACAAAG GTCATCCTCTGCTTTATGAAGCATACTCCAGGCTAATAACAAAGCATCCCAATGTGTACTTGATTGTAGCTGGCTCTGGA CCATGGGAGAATCGGTACAAGGATTTAGGGAACCAAGTTCTTGTTCTTGGATCAATGAATCCTTCCATGCTAAGAGGATT CTATAACGCGATTGACATTTTTGTGAATCCTACACTTAGACCACAGGGGCTTGATCTTACTCTGATGGAGGCCATGATGA GTGGGAAGCCTCTTTTGGCATCAAGGTTTCCAAGCATTAAAGGTAGTATTGTGGTTGATGATGAATTTGGTTTCATGTTC TCTCCCAATGTGGAGTCCCTATTGGAGGGACTGGAAGCAGTGGTTAAGGAAGGGCAAGAGAGGCTAGGAAGGAGAGGGAA GGCATGCCGTGAATATGCAACTTCGATGTTTACAGCAACAAAGATGGCATTAGCATATGAGAGGCTATTCCTCTGCATAA AACATGATGCATTTTGTACCTATCCTTGA
Protein sequence (LotjaGi2g1v0345800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPHFSFKRNLTNKSNPNHLVQCIPSSLVPLDTSQLSPQISKNSKHNSNKNLCSNFRTPLKMAANNKFKKSNLPSHFNFC ITLFSLLLFTIPAYFLIQNSTTISKCTPFTKAWSGDLRLAEFAWNHLQFLEHNPPPTPLKIAVFTRKWPIGTTPGGMERH AHTLHTALANRGHRVHIFTSPPQDTKNQQAGSPSPTSPHIHFHEGEPGKWRYNKAWEQFLVENQLEPFDVVHSESVALPH WLARDLPNLAVSWHGIALESLQSSIFQDLALGSDATRSPDFDKGLQGVVPKILNEIRFFRKYSHHVAISDSVGEMLRDVY QIPSRRVHVILNGVDGEDFKQDVELGKEFRTKIGIPSNASLVLGVAGRLVRDKGHPLLYEAYSRLITKHPNVYLIVAGSG PWENRYKDLGNQVLVLGSMNPSMLRGFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGSIVVDDEFGFMF SPNVESLLEGLEAVVKEGQERLGRRGKACREYATSMFTATKMALAYERLFLCIKHDAFCTYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 76 | 76 | - | – | |
| PANTHER | 62 | 542 | 481 | 5.9E-267 | – | |
| PANTHER | 62 | 542 | 481 | 5.9E-267 | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 77 | 97 | 21 | - | – | |
| Phobius | 98 | 542 | 445 | - | – | |
| Gene3D | 139 | 342 | 204 | 6.0E-21 | – | |
| CDD | 140 | 530 | 391 | 3.113E-67 | – | |
| SUPERFAMILY | 140 | 530 | 391 | 6.81E-59 | – | |
| Pfam | 154 | 335 | 182 | 3.2E-21 | ||
| MobiDBLite | 180 | 204 | 25 | - | – | |
| MobiDBLite | 180 | 196 | 17 | - | – | |
| Gene3D | 343 | 532 | 190 | 8.8E-32 | – | |
| Pfam | 361 | 507 | 147 | 2.0E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0345800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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