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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0346600 |
| Transcript ID | LotjaGi2g1v0346600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT5G45300.1 beta-amylase 2; Swiss-Prot: sp|Q9FH80|BAM8_ARATH Beta-amylase 8; TrEMBL-Plants: tr|A0A0L9URV3|A0A0L9URV3_PHAAN Beta-amylase; Found in the gene: LotjaGi2g1v0346600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82324353..82328718) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGAACACCAACGACGACGTTTCCGCACAAGATCTCGACCCTCAAAGCGATCACAGCTCCGATTACTTAGCACACTC TCACCAATTGTCTCAGCCGCAGCCTCGCCGCCCCCGCGGCTTCGCCGCGGCGGCAGCGGGGGTCAATTCCGCCGGAAAGG GGAAGAAGGAGAGGGAGAAAGAAAAGGAGCGGACGAAGCTCCGGGAGCGGCACCGCCGTGCCATCACTAGCCGCATGCTC GCCGGACTCCGTCAGTATGGCAATTTCCCTCTGCCGGCGCGTGCGGACATGAACGACGTGCTCGCTGCTCTCGCGCGTGA GGCTGGTTGGGTCGTCGACGCCGATGGCACCACCTATCGCCAGTGTCCCCCTCCTTCTCACATGGTTCCTTTCTTCCTTC CTTCATTCCAATTTCATGATTTTGATTTGAGCTTGAATTTGCTATGATTCTGATTGCTTGTTATAGAATGCTCATATTGG TTGTTAGGTTAGAATTTAGAACTTAGAACTTAGAACTTGAAAGTTGTGGCAATGCATTTGAATTTAGTTAAATTGAAATG TTGAGCTGGGGAATGATTTGTTGTCGATTTTAGAGTGTTTATGTTTAATGAAGATGGCATTGTGCAGGGATCATTTGCCG CAGCGAGGTCAGTCGAAACTCAACTCTCTGCTGGTTCCTTGAGAGCTTGCTCCGTTAAGGAAACGTTAGAGAATCAGCCG CCAGTTCTTAGAATTGATGAATGCTTGTCGCCTGCGTCCATTGATTCTGTTGTACTTGCAGAAAGGGACTCGAAGAGTAG GAAGTTCGCGAGTGCGAGCCCCATCGATTCAGTTGACTGCTTGGAAGCTGATCAGGTGTCTTTAGTAGTGACTGATTCAA GTTATGACGTGCCAGAGTTGAACACTAATTGCATAATGTTCATTTCGTTTGTTTTTGTTTTTAAACAAAGTGTGAAGTTT TAGTTTATAATACGATTGTGGAACTGGGTTAAACGTTGTGATTGCACTTCCTCGAGGACTGTCTGATTGTGTAATTTGTT AAATGCAGCTTATGCAAGTTATGCATACTGGGGTGCATGAAAATGACTTTACTGGCACGCCATACGTTCCTGTTTACATA AAGCTTCCAGTAAGTGTCTTCTATTTGCTGCTTGCTGAATGTGTGACTAGCATCCGACTTGTTTAATTTATTCTAAACAA TAAATAATACATTTACAGGTTACACTTTGTATGGCCTTTGAGGATTTGACTGTGTTTGCCTTGTGTTGGAATATAGGCTT ATGAAATTATCCTTTTGTTGCAGGTTGGTATTATCAACAAATTTTGTCAGTTGATTGATCCTGAAGGCATTAGACAGGAG CTAATCCATATTAAGTCTTTAAATATAGACGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCTCA GAAATATGTGTGGTCTGGTTATAGGGAGCTATTTAACATTATAAGAGAATTCAAGCTGAATTTACAGGTATATATTTTAA TAGCACATATCATCTTATGCATGCACTCATGTTCTCTAATAATGAAAATTTATCAAAACTGAGTATGACTTTGTATGTAT ACTATATATGATGCATTTTTGTGGTTTCAGTTAGGAAGGACCAAATCATTTAGTACAAGGGTGTGTTTTCTAGTATGTGA TTTTGATAGGATTTTTACTTATTAAATGGTTCAAGATATTTAAAAAATATGAACAAAAAAGGGGACAAAGAGATGTGGTG GAGTCAGGAGGTGAGTATCCTCAAAAAGTAAAAAAAGAAAGAGCAGATCTGAATGAGTTGATGGTGTCAACACTGTATGA CATATCGATTTGTGGTGTAGAAACTTGCGAGCTACTCTTGCAATTTCTTTTCTCAATTGGTTTTCCAGGTCTTCTATTAT TATTTGGACATAATAACTAGTGGATGATTTCAGTTGTTTTGTTTTCTTATTTAATTCTTAAATATTTGTTTCTTCTTTGT AATAAATATAATTGTTTCTCTATCTTGTATTATACGTGAAAGATTATATTGTTTTTAAAATGTGAGAGGTTTCTCTAATT GAATGTGTATTCTTGTGTTGGGAATTTGGAGGCATCTTTGACGTTGTTCGAGATCCTATGTTGATTCTTATTTCAAATTC TGAAGGTTGTTATGGCATTCCATGAATGTGGAGGGAGTGATTCTAGTGATGCATTGATTTCCCTCCCGCAATGGGTTTTG GATATTGGAAAAGACAACCAAGATATATTCTTCACGGATCGTGAAGGACGGAGGAATACTGAATGCCTATCTTGGGGAAT TGACAAAGAACGGGTTCTCAAAGGCAGAACTGGAATTGAGGTAAGAAAATATCTAGTATACTCTTATGGATTCTACATTG TGCGCAATTATATCTGGTTATTGGAGGATGTGCATTTCATAGATTGTATATTTTGAAGTATTCCTCAATTGAAAACCATT TAGGATATACATCATCATTTGTTGTGTGATGTCACTAATTTGCCTTCTCTGATATGTACAGGTCTATTTTGATATGATGA GAAGCTTCCGTACTGAGTTTGATGACCTATTTGCCGAAGGTCTGATTTCTTCAGTAGAAATTGGACTAGGAGCATCTGGG GAGCTGAAATACCCTTCTTTTTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGGTAGCTCATTTTTT GGCCCTATTTCAAAATAGTTGCATTATCCTTTATTGTAAATTATGCATGTAATATTATATTTTATTTCTTAATAAAGCAG TCTTGTTCTGATCTTCTGTAAATAATTTATGGGCAGTGCTATGATAAATACCTGCAACACAGTCTACGCAGAGCTGCCAA ATTACGTGGTCACTCTTTCTGGGCTAGAGGGCCGGATAATGCTGGACACTACAACTCTATGCCGCATGAAACTGGATTCT TTTGCGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTGCATTGGTACTCCCAGACATTAGTAGACCATGCG GATAATGTTTTGTCTCTTGCAAGCCTTGCTTTTGAGGAAACACAAATAATTGTTAAGGTATTGTTTCTGATATATCAGTT CTGTGACCAAATTTGAATGATCTTAGTTACGAGTTACGACCAGTATTGAGTGCACTATAATTGATTGATGATACTTGGAG TCAGTTTGCTATCTCTTAAAAAACCGGGTTATATTAACTTTTTCCCATTTTTAGTGCATATTGAACGACACTTACTGACC AGTACTACAGGATAATTCATGCTTATGGTGTGTTGCACAAGCATTATCAATCCAGTCTGTCAAAGTTGTGATTCTATTCT GCAGTGTGGTTATTTAGTTCAATTAAACTGAATTATGTAAATTCCTATATGTTAATGTGGTATCCACTGAATAGTAGGCT GGAATCGTTATTGGTAATAACTTATTTATGATGCTTGTTTTATTCAATAAAAAATAGGTATTTGGGTTCGTGGACAGTTA TGAGATCAGAAATAAGAAGCTAACTATTCTATGCACAATGAAAAGTCATGTTTAATTATTGACTCTATTTTTATGTTTAT TTGGTTAGTTCCACAGATAATTATCCTTAACTAACATGGTCATTGCGTCTCCTAAAAAATCCTGCCCTCAAAAGTAGAAG TTTACCGACTGAAGTGATATTAATTTATGAATAAACACCTTAAAAGATGATACTGTGCAGGTTCCTGCAGTATACTGGTG GTATAAGACACCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGGTATTCGCCTGTGT TTGAGGTTCTGAAAAAACATGCCGTCACGATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAA TCATTGGTTGATCCTGAGGGTTTGAGTTGGCAAGTAAGTTTAGTTTCCTACATGCTGAACCTCCACCGGAATATTTCTTC TTATAAGTTTTGCCACCTTAATCCTGCTCTGAAGTGATTTGCAAAACTTATTTTGATCAACTTGGACCTGTGGTTTTTTT TCCCATCCATTTGTTATGAATGATGTTGGCATGTTTTATGTTTCCAAAGGTATTAAACTCAGCTTGGGATCGGGGGTTGA TTGCCGCCGGAGAGAATGCACTCCTTTGCTATGATAGAGAAGGGCACAAGAGATTAGTTGAGATGGCAAAGCCCAGAAAT GATCCAGATCGCCGGCACTTCTCATTCTTTGTGTATCAGCAACCGTCTTTGCTTCAGGGAAATCCTTGCTTGTCAGAATT GGATTTCTTCATCAAATGCATGCATGGTAAGGACCCTTACTCTTAA
CDS sequence (LotjaGi2g1v0346600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACACCAACGACGACGTTTCCGCACAAGATCTCGACCCTCAAAGCGATCACAGCTCCGATTACTTAGCACACTC TCACCAATTGTCTCAGCCGCAGCCTCGCCGCCCCCGCGGCTTCGCCGCGGCGGCAGCGGGGGTCAATTCCGCCGGAAAGG GGAAGAAGGAGAGGGAGAAAGAAAAGGAGCGGACGAAGCTCCGGGAGCGGCACCGCCGTGCCATCACTAGCCGCATGCTC GCCGGACTCCGTCAGTATGGCAATTTCCCTCTGCCGGCGCGTGCGGACATGAACGACGTGCTCGCTGCTCTCGCGCGTGA GGCTGGTTGGGTCGTCGACGCCGATGGCACCACCTATCGCCAGTGTCCCCCTCCTTCTCACATGGGATCATTTGCCGCAG CGAGGTCAGTCGAAACTCAACTCTCTGCTGGTTCCTTGAGAGCTTGCTCCGTTAAGGAAACGTTAGAGAATCAGCCGCCA GTTCTTAGAATTGATGAATGCTTGTCGCCTGCGTCCATTGATTCTGTTGTACTTGCAGAAAGGGACTCGAAGAGTAGGAA GTTCGCGAGTGCGAGCCCCATCGATTCAGTTGACTGCTTGGAAGCTGATCAGCTTATGCAAGTTATGCATACTGGGGTGC ATGAAAATGACTTTACTGGCACGCCATACGTTCCTGTTTACATAAAGCTTCCAGTTGGTATTATCAACAAATTTTGTCAG TTGATTGATCCTGAAGGCATTAGACAGGAGCTAATCCATATTAAGTCTTTAAATATAGACGGTGTTGTTGTGGATTGTTG GTGGGGCATTGTTGAAGGCTGGAGCCCTCAGAAATATGTGTGGTCTGGTTATAGGGAGCTATTTAACATTATAAGAGAAT TCAAGCTGAATTTACAGGTTGTTATGGCATTCCATGAATGTGGAGGGAGTGATTCTAGTGATGCATTGATTTCCCTCCCG CAATGGGTTTTGGATATTGGAAAAGACAACCAAGATATATTCTTCACGGATCGTGAAGGACGGAGGAATACTGAATGCCT ATCTTGGGGAATTGACAAAGAACGGGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTCC GTACTGAGTTTGATGACCTATTTGCCGAAGGTCTGATTTCTTCAGTAGAAATTGGACTAGGAGCATCTGGGGAGCTGAAA TACCCTTCTTTTTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACA CAGTCTACGCAGAGCTGCCAAATTACGTGGTCACTCTTTCTGGGCTAGAGGGCCGGATAATGCTGGACACTACAACTCTA TGCCGCATGAAACTGGATTCTTTTGCGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTGCATTGGTACTCC CAGACATTAGTAGACCATGCGGATAATGTTTTGTCTCTTGCAAGCCTTGCTTTTGAGGAAACACAAATAATTGTTAAGGT TCCTGCAGTATACTGGTGGTATAAGACACCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGG ATGGGTATTCGCCTGTGTTTGAGGTTCTGAAAAAACATGCCGTCACGATGAAATTTGTCTGCTTAGGATTTCATCTTTCC AGCCAGGAAGCTAATGAATCATTGGTTGATCCTGAGGGTTTGAGTTGGCAAGTATTAAACTCAGCTTGGGATCGGGGGTT GATTGCCGCCGGAGAGAATGCACTCCTTTGCTATGATAGAGAAGGGCACAAGAGATTAGTTGAGATGGCAAAGCCCAGAA ATGATCCAGATCGCCGGCACTTCTCATTCTTTGTGTATCAGCAACCGTCTTTGCTTCAGGGAAATCCTTGCTTGTCAGAA TTGGATTTCTTCATCAAATGCATGCATGGTAAGGACCCTTACTCTTAA
Protein sequence (LotjaGi2g1v0346600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNTNDDVSAQDLDPQSDHSSDYLAHSHQLSQPQPRRPRGFAAAAAGVNSAGKGKKEREKEKERTKLRERHRRAITSRML AGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAAARSVETQLSAGSLRACSVKETLENQPP VLRIDECLSPASIDSVVLAERDSKSRKFASASPIDSVDCLEADQLMQVMHTGVHENDFTGTPYVPVYIKLPVGIINKFCQ LIDPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIREFKLNLQVVMAFHECGGSDSSDALISLP QWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISSVEIGLGASGELK YPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYS QTLVDHADNVLSLASLAFEETQIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCLGFHLS SQEANESLVDPEGLSWQVLNSAWDRGLIAAGENALLCYDREGHKRLVEMAKPRNDPDRRHFSFFVYQQPSLLQGNPCLSE LDFFIKCMHGKDPYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| MobiDBLite | 1 | 69 | 69 | - | – | |
| MobiDBLite | 52 | 69 | 18 | - | – | |
| Pfam | 52 | 200 | 149 | 9.5E-49 | ||
| PANTHER | 94 | 651 | 558 | 0.0 | – | |
| PANTHER | 94 | 651 | 558 | 0.0 | ||
| Gene3D | 214 | 655 | 442 | 1.5E-162 | – | |
| SUPERFAMILY | 218 | 650 | 433 | 1.01E-157 | ||
| Pfam | 242 | 626 | 385 | 6.3E-85 | ||
| PRINTS | 258 | 272 | 15 | 2.5E-56 | ||
| PRINTS | 279 | 297 | 19 | 2.5E-56 | ||
| PRINTS | 301 | 322 | 22 | 2.5E-56 | ||
| PRINTS | 394 | 416 | 23 | 2.5E-56 | ||
| PRINTS | 467 | 486 | 20 | 2.5E-56 | ||
| PRINTS | 501 | 517 | 17 | 2.5E-56 | ||
| PRINTS | 518 | 529 | 12 | 2.5E-56 | ||
| PRINTS | 536 | 559 | 24 | 2.5E-56 | ||
| PRINTS | 574 | 596 | 23 | 2.5E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi2g1v0346600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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