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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0349500 |
| Transcript ID | LotjaGi2g1v0349500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc knuckle family protein; TAIR: AT4G19190.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q8VZ67|Y4919_ARATH Uncharacterized zinc finger CCHC domain-containing protein At4g19190; TrEMBL-Plants: tr|A0A0B2S9E4|A0A0B2S9E4_GLYSO Putative zinc finger CCHC domain-containing protein; Found in the gene: LotjaGi2g1v0349500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82622310..82627337) extracted from Lotus japonicus Gifu genome v1.2.
AACCCTTTATTTAACTCTGCGTGGTGGTGCTGAGAAAGCGAAGAAGAAGATGGAGGGCGAGGAAGGCGGTGGCATCAGGC TGAGCAAGAGATTCTCCGACGACAACAAAGGCGGAGCAGGATCAGAGGTTGACTACAAGACCAAATCAGGCACCGCATGG AGCCACTCTTACCTCAACCAGAAACCATGGCACCCTCTCTCTTACCCTAACCAACGCCGCAAATGGATCGCCGAACAAAC CCACGCCAACCGTGAACGCCGCACCGAAGAGGTCGCTCGTGAGGCAAGTACCCAACCCTCTTCCACTTCCATCATCCCAA TTCCAATTCCCATAACCCTCTTTCCCTCTTTTTGCAGTATGCTCAGGAGCAAGAGTTTTATCGCCAAACCAATCTCATAT CCAAGAAGGACAAGGAGAAGGTTCAATTTTGCACTCGACCCATTTTTTCTCACTTCATTTCCCTTCATGGGTCGGTTTCT GTTTTCTCAATTTCGTCTTGTTGTGTAGGTGGAGCTCATGCAAGCTGTTAGCTTCATGTATGTTCGTCCTCCTGGTTACA ACGCCGAAAGCGCTAAGGCTGCGGAGATGAATGATCAGACTAAAAGAGAGGAGATGACCAGTGAGACCAATGCTGATGCA CCACCCTCCTCTTCATTGTATATCCATCTCTCTCTTTTGCAATGTGATTAGTTTTTTTTTTGTTCTTGTGTGATTGAATC ACTTGCTTCTCAGGCCTCCCTCGCGAGTGAATGACGAGAAGAAAAAACGGAGGCCAAAAGATGTTTTCGGGCGTACTCTA CCAACTGAAGAAGAATTCAAAGTTCTTAAAAACGCGCCGAAGTATGTTTGTAAGCTATTTTTCAATTTAGTTGGTTTGGT TGGTGTTGAAAAATCAGAAACAGGAGTTTTCCCTCCATCTCTAGCTGCATTGTTTGTAGAGATTTATATTACTTAAGGCG TATATTGATCACACTAGGATCTAGGAACTCGGGGGTTTTACTGCAAAGGGAGACTACCATTGTTGATGTTTTCTCTATTA CGTGTTGAATGCAATACAGGGATAACAGGGGGAGAGCTTAAAATGTTTGTTATTAAATCACTTCGTTAGTTGGTTGGCTA TTATGTTGAGTGTGGCTTAGAACAAATTAAAGGTGGAGTAAGGATGAAATGGAATATTCGGTCAAAGTGTATCAACGCAG ACACTTGAGAAACATGGATTCCTTGCCCTGTCCAGTATTGAAAGGGAATTTAAAGGGGAGGGTAGACTTGGTGTTTTTAT TTTTTACAAGAAGATAACGATAAGTAAAAGTAAATTTCTGTCACCTCTTATAAGTTATGCAGCCTTTTTTCATTTTAAAA GCTTTGCAAACCTCTCATAATCGTTATATGACAGCCTTTAAACCTATTGGAGGTGCTAGGTTCCTACAGCAACATAGATT GAAAGTGACTGAAATCTGCAATATCAACAGGGGAAATTATTATCTGTAACTGTTAGAACATAGATGGGAGCTAGGTATTA GATCACAACAGGTATTGAAAATGACTGACATCTGCAGTATCAAGTGCATCCTAGATTCATGTGTTGATTATTGACATATG GATGAAATTCTGCTTGATTGCCTAGATTTTTTTCTTTTGGTGTTGAATTTGGGGAAACAAGCTCCATGCTCTCCATTTTT TACGTGGCAGTGTATTCTTCAAGTTTGAATTGTTGCAGTGAACCAATTTAAATATCCTTTTAGTAACTGAATTGTTTTTA GGCTGGAAACAGGAGTTGCTGGCCGGGCAAAACCTTTTGGAGTTGAGGTCCGCAATGTAAAATGTTTAAGGTGTGGGAGC TATGGTCATCAAAGTGGTGATCGTGAATGTCCCTTGAAGGATTCTATAATGCCTAATGAGGAGAGCAGATTGAAAAGAGA TGACCCCTTGAATGCAATCATAGCCCACACAGATCCTACTGAGGTTAGTTACTCATTTTATAAAACTATTGTTTGGGGAA TTTTGCAATTTAGTCTTTGAAATTGTGAATTTGTACACTTATGCATTGGTAGTTTGGTTTTTGTTTTGCTGACAAATTTG CTATTTTGAATACAAATGTTTCTTGGTATACTTTTTATTTCTTCACCCTTTCCTAAAATGATTAATATATTGTTCTTCAA TTCAGTAACACCTTGAAGCCATTCAATCGCATATACTTATCATCACTTCTTTATAAAAAGAACATGACCCGTATCATAAT GAGATGGCTTACATTTGTTCACAAGCTGATGTTCATATTTGCTAAGAATTACACTTGCAGGAAGACCATTTTGTATCTTC TTTTATCTTATTCTGAATCTAATAACTATTTAATATATCTGGGACCTAAATTCTCCTAATGCAGTTGTTGAATGTGAGAT AATATATGCAAGCAATTGATTAGCGTCATGCTGTTTCTAACTAACTTTTCATACCATCCAAGTGAAAATGCTTCGATTTG ATCACTGTCCATTGTTCCTTGCATTTCTAGCCCTTTTGAACAGAGTTCTCTACATTATTCATTGTACAAGCAATGCCCAA TCTATTGTGAGAGCTTGTTTGGATCTTATGTTTCACTTCTGTAGAAACTGAAAATGAATATGTTCTCAAGAGAGATTTTC CATGGAAATCTCTTTGAGTGAAATCATCTAAGACCAAATATACAAAGATTTGGATGAAAAGGTTAGCTAAGAACTTGGAA AGGAAAAATTCCCCCTAACAGATGAACAAGAGTTTGAAAATCTTAGCATGCCTCCCATTGATGTTCTTTTATAGTGGCAC TGTGTGCTGCTGTGTTGGGTACAGCATCAAAATATGCTTGTCAATTGTCATGCAAACTAGTCTACATGCGAAGAATGTGT ATATAACTTCCCCCAAAAAATATGGTAATATTGATACATATATTTTGTGGTGTTTTTCAAACAATATAGCCTCTAAAATG GGAGCTCAAGCAGAAGCCTGGAATCAGTCCTCCTCGTGGAGGGTTCAAACCAGATGACCCCAACCAGCAGATAGTTGCTG CTGATGACATATTTGATGAGTATGGAGGTATCTGATCGTAGCTCTTTTTTTTTTGAAGTGTTTTGTATGCCTTGAAGTCT TGGATGTTTGTCCAAAGTCAATCTCCCAACATCTCTTATTTTGCAGGTTTTCTCAATATGGATAGTATCCCTGATTTGTT GACCAACTTTTCTAAGAAACCAAAGAAGTCCAAAAAGAGCAAGCACAAAAAGCAGCAACTGGTACATTCAGAAACCGAAG CATCTTCTGATGATGGAGAGAAAAGGTCTAAGAAAAAAAAGGTTAAGGTAAACAAGAAGAAGCGAAGTCATGCAGAGTCA AGTTCATCAGACACCTCAGTCTCTGAAAAAGATCATGGAAAAAGCAGACACAAAAGTTCGTATTCATCTGAAGATTCTGA CAGTAACGTGAAAGATCGAAGTAAAAGGACTAAACACAAGCATTCTTTTTCACCCAAAGGTTCTGATCAACCTAGGCACA CTAGGAGTAAACATCGCAGACAAAGGCATTCCTCTTCATCTGAGGGTTCTGGTTCTGATGGTTACCATGAAAGTTACAAG AACAGTGATAAACATTCTTTTTCGCCTGAAGATTCTGACAATGACAAGGATGACCGGAGTAGAAAGGATATACAAAAGCA CAAGAGGAAACAACGAAAAAGACATTCTTATTCCGACGATGATTCTGGTGCTGCTGGTTATCATGTATATCACAAGAGCA GAGATGAGCAGTCTTCTTCATCGGATGATAAATCTAATCATAAAAAAACTAATGTTAAAAGGAGCAGCCATAAGCACTCA TCAAAAGCCCATTGCGATTCTCAAGAGTACAGCAGAAAGTTTAGTTTTGATCGCTGGCATGGAGATCAAAAGAGCAGAGG TGGGCATTCTTATTCATCTGAAAATTCAGATATTGACAAGGATGATCAAAGTAGAAGGATCAAACAAAAGCATTCTACTA CATCGAAGGGTTCTGAACATACGAGTAAACAGAGCAGGAAAAAGCATTCTTATTCATCTAAGGATTCTGGTGCTGATAGA TATCACACAAGTGAAAAGGGCAGATGTGATGATGGGGAAAAGGAAAACCATCATAAGCTGAGAAGGAGCAGACACAAGCA TTGAATAGCTCATTGGAACTGTCAGAAGCATCACAGAAATAGGCAAATCAAAGTCTTCCTTCCTAAGGAATGCCAAAATA TTAGAACTGTAGTCTGATTAAGTTGTTTGCTGTATTGATTATGTGGTGTAACAAAACTGGCATTCCTTTCTTTGGTTTAT TTCTCCCTTTAGTGAAGCAAATATTTTTATCTTTTTCAGGTTCTTATGAGTTATATTGTTTGTAAGACCAACCCGTGTAG CTTGAAATGATTAGCCTTCTCAATCACCAAATTTGATTTCAATGAGATTGATTCTCCACAGTCGAGAACTAACAACCAAA TTACTTTCGCGAACTTGCCTTGAGTAAGAATAACTATTTGGTGGATATGGAGAACTAGAAACATTGTGTATGGAGGGACT TACTGGGGTATCATGGAATCTCCATCAACTTCCACATGGAGCTGTTGGCTCTCTTTCATGACCTCGACGGTATGTTAGTG TAGACCAGCTACTCACAAATATGCAAGTAAGAGTGTTAAAGACCTTCTCCAAAGGCAATGGGAAATGATCATGTTGTGCA TACCAAGTTCAGAGCAAGGCACGCTGACAAGCTGAAGATAGTATATTCCCCAGTTTCTAGAATGGAAGCATTTTTGTTAT TCACTTGTTTGATTTTGTTTCAGTATGTATTTTTGTTATTCACTTGTTTGTCATCTAGTACCAAAAAGGCCATTGTTGAA TATGTCAATACTCTAGTAGGGTAATACAACTTTTCAGAAATGAGGAATCTAATAGAAATTTGATAAAAACTAATCGATGC AAAATAGTAGAGTATGAATAGAAGGGAAAAATAATTTTTTAATTTAGGTAAAACTTTGGTGTTTTGCC
CDS sequence (LotjaGi2g1v0349500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCTGTTAGCTTCATGTATGTTCGTCCTCCTGGTTACAACGCCGAAAGCGCTAAGGCTGCGGAGATGAATGATCA GACTAAAAGAGAGGAGATGACCAGTGAGACCAATGCTGATGCACCACCCTCCTCTTCATTGCCTCCCTCGCGAGTGAATG ACGAGAAGAAAAAACGGAGGCCAAAAGATGTTTTCGGGCGTACTCTACCAACTGAAGAAGAATTCAAAGTTCTTAAAAAC GCGCCGAAGCTGGAAACAGGAGTTGCTGGCCGGGCAAAACCTTTTGGAGTTGAGGTCCGCAATGTAAAATGTTTAAGGTG TGGGAGCTATGGTCATCAAAGTGGTGATCGTGAATGTCCCTTGAAGGATTCTATAATGCCTAATGAGGAGAGCAGATTGA AAAGAGATGACCCCTTGAATGCAATCATAGCCCACACAGATCCTACTGAGCCTCTAAAATGGGAGCTCAAGCAGAAGCCT GGAATCAGTCCTCCTCGTGGAGGGTTCAAACCAGATGACCCCAACCAGCAGATAGTTGCTGCTGATGACATATTTGATGA GTATGGAGGTTTTCTCAATATGGATAGTATCCCTGATTTGTTGACCAACTTTTCTAAGAAACCAAAGAAGTCCAAAAAGA GCAAGCACAAAAAGCAGCAACTGGTACATTCAGAAACCGAAGCATCTTCTGATGATGGAGAGAAAAGGTCTAAGAAAAAA AAGGTTAAGGTAAACAAGAAGAAGCGAAGTCATGCAGAGTCAAGTTCATCAGACACCTCAGTCTCTGAAAAAGATCATGG AAAAAGCAGACACAAAAGTTCGTATTCATCTGAAGATTCTGACAGTAACGTGAAAGATCGAAGTAAAAGGACTAAACACA AGCATTCTTTTTCACCCAAAGGTTCTGATCAACCTAGGCACACTAGGAGTAAACATCGCAGACAAAGGCATTCCTCTTCA TCTGAGGGTTCTGGTTCTGATGGTTACCATGAAAGTTACAAGAACAGTGATAAACATTCTTTTTCGCCTGAAGATTCTGA CAATGACAAGGATGACCGGAGTAGAAAGGATATACAAAAGCACAAGAGGAAACAACGAAAAAGACATTCTTATTCCGACG ATGATTCTGGTGCTGCTGGTTATCATGTATATCACAAGAGCAGAGATGAGCAGTCTTCTTCATCGGATGATAAATCTAAT CATAAAAAAACTAATGTTAAAAGGAGCAGCCATAAGCACTCATCAAAAGCCCATTGCGATTCTCAAGAGTACAGCAGAAA GTTTAGTTTTGATCGCTGGCATGGAGATCAAAAGAGCAGAGGTGGGCATTCTTATTCATCTGAAAATTCAGATATTGACA AGGATGATCAAAGTAGAAGGATCAAACAAAAGCATTCTACTACATCGAAGGGTTCTGAACATACGAGTAAACAGAGCAGG AAAAAGCATTCTTATTCATCTAAGGATTCTGGTGCTGATAGATATCACACAAGTGAAAAGGGCAGATGTGATGATGGGGA AAAGGAAAACCATCATAAGCTGAGAAGGAGCAGACACAAGCATTGA
Protein sequence (LotjaGi2g1v0349500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQAVSFMYVRPPGYNAESAKAAEMNDQTKREEMTSETNADAPPSSSLPPSRVNDEKKKRRPKDVFGRTLPTEEEFKVLKN APKLETGVAGRAKPFGVEVRNVKCLRCGSYGHQSGDRECPLKDSIMPNEESRLKRDDPLNAIIAHTDPTEPLKWELKQKP GISPPRGGFKPDDPNQQIVAADDIFDEYGGFLNMDSIPDLLTNFSKKPKKSKKSKHKKQQLVHSETEASSDDGEKRSKKK KVKVNKKKRSHAESSSSDTSVSEKDHGKSRHKSSYSSEDSDSNVKDRSKRTKHKHSFSPKGSDQPRHTRSKHRRQRHSSS SEGSGSDGYHESYKNSDKHSFSPEDSDNDKDDRSRKDIQKHKRKQRKRHSYSDDDSGAAGYHVYHKSRDEQSSSSDDKSN HKKTNVKRSSHKHSSKAHCDSQEYSRKFSFDRWHGDQKSRGGHSYSSENSDIDKDDQSRRIKQKHSTTSKGSEHTSKQSR KKHSYSSKDSGADRYHTSEKGRCDDGEKENHHKLRRSRHKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 375 | 375 | 1.7E-114 | ||
| PANTHER | 1 | 375 | 375 | 1.7E-114 | – | |
| MobiDBLite | 12 | 69 | 58 | - | – | |
| MobiDBLite | 51 | 69 | 19 | - | – | |
| MobiDBLite | 155 | 176 | 22 | - | – | |
| MobiDBLite | 197 | 521 | 325 | - | – | |
| MobiDBLite | 220 | 238 | 19 | - | – | |
| MobiDBLite | 249 | 287 | 39 | - | – | |
| MobiDBLite | 331 | 358 | 28 | - | – | |
| MobiDBLite | 368 | 403 | 36 | - | – | |
| MobiDBLite | 415 | 512 | 98 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription corepressor activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A third class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators. |
Expression pattern of LotjaGi2g1v0349500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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