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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0349500 |
| Transcript ID | LotjaGi2g1v0349500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc knuckle family protein; TAIR: AT4G19190.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q8VZ67|Y4919_ARATH Uncharacterized zinc finger CCHC domain-containing protein At4g19190; TrEMBL-Plants: tr|I1LIF8|I1LIF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0349500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82622412..82627311) extracted from Lotus japonicus Gifu genome v1.2.
GTGCTGAGAAAGCGAAGAAGAAGATGGAGGGCGAGGAAGGCGGTGGCATCAGGCTGAGCAAGAGATTCTCCGACGACAAC AAAGGCGGAGCAGGATCAGAGGTTGACTACAAGACCAAATCAGGCACCGCATGGAGCCACTCTTACCTCAACCAGAAACC ATGGCACCCTCTCTCTTACCCTAACCAACGCCGCAAATGGATCGCCGAACAAACCCACGCCAACCGTGAACGCCGCACCG AAGAGGTCGCTCGTGAGGCAAGTACCCAACCCTCTTCCACTTCCATCATCCCAATTCCAATTCCCATAACCCTCTTTCCC TCTTTTTGCAGTATGCTCAGGAGCAAGAGTTTTATCGCCAAACCAATCTCATATCCAAGAAGGACAAGGAGAAGGTTCAA TTTTGCACTCGACCCATTTTTTCTCACTTCATTTCCCTTCATGGGTCGGTTTCTGTTTTCTCAATTTCGTCTTGTTGTGT AGGTGGAGCTCATGCAAGCTGTTAGCTTCATGTATGTTCGTCCTCCTGGTTACAACGCCGAAAGCGCTAAGGCTGCGGAG ATGAATGATCAGACTAAAAGAGAGGAGATGACCAGTGAGACCAATGCTGATGCACCACCCTCCTCTTCATTGTATATCCA TCTCTCTCTTTTGCAATGTGATTAGTTTTTTTTTTGTTCTTGTGTGATTGAATCACTTGCTTCTCAGGCCTCCCTCGCGA GTGAATGACGAGAAGAAAAAACGGAGGCCAAAAGATGTTTTCGGGCGTACTCTACCAACTGAAGAAGAATTCAAAGTTCT TAAAAACGCGCCGAAGTATGTTTGTAAGCTATTTTTCAATTTAGTTGGTTTGGTTGGTGTTGAAAAATCAGAAACAGGAG TTTTCCCTCCATCTCTAGCTGCATTGTTTGTAGAGATTTATATTACTTAAGGCGTATATTGATCACACTAGGATCTAGGA ACTCGGGGGTTTTACTGCAAAGGGAGACTACCATTGTTGATGTTTTCTCTATTACGTGTTGAATGCAATACAGGGATAAC AGGGGGAGAGCTTAAAATGTTTGTTATTAAATCACTTCGTTAGTTGGTTGGCTATTATGTTGAGTGTGGCTTAGAACAAA TTAAAGGTGGAGTAAGGATGAAATGGAATATTCGGTCAAAGTGTATCAACGCAGACACTTGAGAAACATGGATTCCTTGC CCTGTCCAGTATTGAAAGGGAATTTAAAGGGGAGGGTAGACTTGGTGTTTTTATTTTTTACAAGAAGATAACGATAAGTA AAAGTAAATTTCTGTCACCTCTTATAAGTTATGCAGCCTTTTTTCATTTTAAAAGCTTTGCAAACCTCTCATAATCGTTA TATGACAGCCTTTAAACCTATTGGAGGTGCTAGGTTCCTACAGCAACATAGATTGAAAGTGACTGAAATCTGCAATATCA ACAGGGGAAATTATTATCTGTAACTGTTAGAACATAGATGGGAGCTAGGTATTAGATCACAACAGGTATTGAAAATGACT GACATCTGCAGTATCAAGTGCATCCTAGATTCATGTGTTGATTATTGACATATGGATGAAATTCTGCTTGATTGCCTAGA TTTTTTTCTTTTGGTGTTGAATTTGGGGAAACAAGCTCCATGCTCTCCATTTTTTACGTGGCAGTGTATTCTTCAAGTTT GAATTGTTGCAGTGAACCAATTTAAATATCCTTTTAGTAACTGAATTGTTTTTAGGCTGGAAACAGGAGTTGCTGGCCGG GCAAAACCTTTTGGAGTTGAGGTCCGCAATGTAAAATGTTTAAGGTGTGGGAGCTATGGTCATCAAAGTGGTGATCGTGA ATGTCCCTTGAAGGATTCTATAATGCCTAATGAGGAGAGCAGATTGAAAAGAGATGACCCCTTGAATGCAATCATAGCCC ACACAGATCCTACTGAGGTTAGTTACTCATTTTATAAAACTATTGTTTGGGGAATTTTGCAATTTAGTCTTTGAAATTGT GAATTTGTACACTTATGCATTGGTAGTTTGGTTTTTGTTTTGCTGACAAATTTGCTATTTTGAATACAAATGTTTCTTGG TATACTTTTTATTTCTTCACCCTTTCCTAAAATGATTAATATATTGTTCTTCAATTCAGTAACACCTTGAAGCCATTCAA TCGCATATACTTATCATCACTTCTTTATAAAAAGAACATGACCCGTATCATAATGAGATGGCTTACATTTGTTCACAAGC TGATGTTCATATTTGCTAAGAATTACACTTGCAGGAAGACCATTTTGTATCTTCTTTTATCTTATTCTGAATCTAATAAC TATTTAATATATCTGGGACCTAAATTCTCCTAATGCAGTTGTTGAATGTGAGATAATATATGCAAGCAATTGATTAGCGT CATGCTGTTTCTAACTAACTTTTCATACCATCCAAGTGAAAATGCTTCGATTTGATCACTGTCCATTGTTCCTTGCATTT CTAGCCCTTTTGAACAGAGTTCTCTACATTATTCATTGTACAAGCAATGCCCAATCTATTGTGAGAGCTTGTTTGGATCT TATGTTTCACTTCTGTAGAAACTGAAAATGAATATGTTCTCAAGAGAGATTTTCCATGGAAATCTCTTTGAGTGAAATCA TCTAAGACCAAATATACAAAGATTTGGATGAAAAGGTTAGCTAAGAACTTGGAAAGGAAAAATTCCCCCTAACAGATGAA CAAGAGTTTGAAAATCTTAGCATGCCTCCCATTGATGTTCTTTTATAGTGGCACTGTGTGCTGCTGTGTTGGGTACAGCA TCAAAATATGCTTGTCAATTGTCATGCAAACTAGTCTACATGCGAAGAATGTGTATATAACTTCCCCCAAAAAATATGGT AATATTGATACATATATTTTGTGGTGTTTTTCAAACAATATAGCCTCTAAAATGGGAGCTCAAGCAGAAGCCTGGAATCA GTCCTCCTCGTGGAGGGTTCAAACCAGATGACCCCAACCAGCAGATAGTTGCTGCTGATGACATATTTGATGAGTATGGA GGTATCTGATCGTAGCTCTTTTTTTTTTGAAGTGTTTTGTATGCCTTGAAGTCTTGGATGTTTGTCCAAAGTCAATCTCC CAACATCTCTTATTTTGCAGGTTTTCTCAATATGGATAGTATCCCTGATTTGTTGACCAACTTTTCTAAGAAACCAAAGA AGTCCAAAAAGAGCAAGCACAAAAAGCAGCAACTGGTACATTCAGAAACCGAAGCATCTTCTGATGATGGAGAGAAAAGG TCTAAGAAAAAAAAGGTTAAGGTAAACAAGAAGAAGCGAAGTCATGCAGAGTCAAGTTCATCAGACACCTCAGTCTCTGA AAAAGATCATGGAAAAAGCAGACACAAAAGTTCGTATTCATCTGAAGATTCTGACAGTAACGTGAAAGATCGAAGTAAAA GGACTAAACACAAGCATTCTTTTTCACCCAAAGGTTCTGATCAACCTAGGCACACTAGGAGTAAACATCGCAGACAAAGG CATTCCTCTTCATCTGAGGGTTCTGGTTCTGATGGTTACCATGAAAGTTACAAGAACAGTGATAAACATTCTTTTTCGCC TGAAGATTCTGACAATGACAAGGATGACCGGAGTAGAAAGGATATACAAAAGCACAAGAGGAAACAACGAAAAAGACATT CTTATTCCGACGATGATTCTGGTGCTGCTGGTTATCATGTATATCACAAGAGCAGAGATGAGCAGTCTTCTTCATCGGAT GATAAATCTAATCATAAAAAAACTAATGTTAAAAGGAGCAGCCATAAGCACTCATCAAAAGCCCATTGCGATTCTCAAGA GTACAGCAGAAAGTTTAGTTTTGATCGCTGGCATGGAGATCAAAAGAGCAGAGGTGGGCATTCTTATTCATCTGAAAATT CAGATATTGACAAGGATGATCAAAGTAGAAGGATCAAACAAAAGCATTCTACTACATCGAAGGGTTCTGAACATACGAGT AAACAGAGCAGGAAAAAGCATTCTTATTCATCTAAGGATTCTGGTGCTGATAGATATCACACAAGTGAAAAGGGCAGATG TGATGATGGGGAAAAGGAAAACCATCATAAGCTGAGAAGGAGCAGACACAAGCATTGAATAGCTCATTGGAACTGTCAGA AGCATCACAGAAATAGGCAAATCAAAGTCTTCCTTCCTAAGGAATGCCAAAATATTAGAACTGTAGTCTGATTAAGTTGT TTGCTGTATTGATTATGTGGTGTAACAAAACTGGCATTCCTTTCTTTGGTTTATTTCTCCCTTTAGTGAAGCAAATATTT TTATCTTTTTCAGGTTCTTATGAGTTATATTGTTTGTAAGACCAACCCGTGTAGCTTGAAATGATTAGCCTTCTCAATCA CCAAATTTGATTTCAATGAGATTGATTCTCCACAGTCGAGAACTAACAACCAAATTACTTTCGCGAACTTGCCTTGAGTA AGAATAACTATTTGGTGGATATGGAGAACTAGAAACATTGTGTATGGAGGGACTTACTGGGGTATCATGGAATCTCCATC AACTTCCACATGGAGCTGTTGGCTCTCTTTCATGACCTCGACGGTATGTTAGTGTAGACCAGCTACTCACAAATATGCAA GTAAGAGTGTTAAAGACCTTCTCCAAAGGCAATGGGAAATGATCATGTTGTGCATACCAAGTTCAGAGCAAGGCACGCTG ACAAGCTGAAGATAGTATATTCCCCAGTTTCTAGAATGGAAGCATTTTTGTTATTCACTTGTTTGATTTTGTTTCAGTAT GTATTTTTGTTATTCACTTGTTTGTCATCTAGTACCAAAAAGGCCATTGTTGAATATGTCAATACTCTAGTAGGGTAATA CAACTTTTCAGAAATGAGGA
CDS sequence (LotjaGi2g1v0349500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGCGAGGAAGGCGGTGGCATCAGGCTGAGCAAGAGATTCTCCGACGACAACAAAGGCGGAGCAGGATCAGAGGT TGACTACAAGACCAAATCAGGCACCGCATGGAGCCACTCTTACCTCAACCAGAAACCATGGCACCCTCTCTCTTACCCTA ACCAACGCCGCAAATGGATCGCCGAACAAACCCACGCCAACCGTGAACGCCGCACCGAAGAGGTCGCTCGTGAGTATGCT CAGGAGCAAGAGTTTTATCGCCAAACCAATCTCATATCCAAGAAGGACAAGGAGAAGGTGGAGCTCATGCAAGCTGTTAG CTTCATGTATGTTCGTCCTCCTGGTTACAACGCCGAAAGCGCTAAGGCTGCGGAGATGAATGATCAGACTAAAAGAGAGG AGATGACCAGTGAGACCAATGCTGATGCACCACCCTCCTCTTCATTGCCTCCCTCGCGAGTGAATGACGAGAAGAAAAAA CGGAGGCCAAAAGATGTTTTCGGGCGTACTCTACCAACTGAAGAAGAATTCAAAGTTCTTAAAAACGCGCCGAAGCTGGA AACAGGAGTTGCTGGCCGGGCAAAACCTTTTGGAGTTGAGGTCCGCAATGTAAAATGTTTAAGGTGTGGGAGCTATGGTC ATCAAAGTGGTGATCGTGAATGTCCCTTGAAGGATTCTATAATGCCTAATGAGGAGAGCAGATTGAAAAGAGATGACCCC TTGAATGCAATCATAGCCCACACAGATCCTACTGAGCCTCTAAAATGGGAGCTCAAGCAGAAGCCTGGAATCAGTCCTCC TCGTGGAGGGTTCAAACCAGATGACCCCAACCAGCAGATAGTTGCTGCTGATGACATATTTGATGAGTATGGAGGTTTTC TCAATATGGATAGTATCCCTGATTTGTTGACCAACTTTTCTAAGAAACCAAAGAAGTCCAAAAAGAGCAAGCACAAAAAG CAGCAACTGGTACATTCAGAAACCGAAGCATCTTCTGATGATGGAGAGAAAAGGTCTAAGAAAAAAAAGGTTAAGGTAAA CAAGAAGAAGCGAAGTCATGCAGAGTCAAGTTCATCAGACACCTCAGTCTCTGAAAAAGATCATGGAAAAAGCAGACACA AAAGTTCGTATTCATCTGAAGATTCTGACAGTAACGTGAAAGATCGAAGTAAAAGGACTAAACACAAGCATTCTTTTTCA CCCAAAGGTTCTGATCAACCTAGGCACACTAGGAGTAAACATCGCAGACAAAGGCATTCCTCTTCATCTGAGGGTTCTGG TTCTGATGGTTACCATGAAAGTTACAAGAACAGTGATAAACATTCTTTTTCGCCTGAAGATTCTGACAATGACAAGGATG ACCGGAGTAGAAAGGATATACAAAAGCACAAGAGGAAACAACGAAAAAGACATTCTTATTCCGACGATGATTCTGGTGCT GCTGGTTATCATGTATATCACAAGAGCAGAGATGAGCAGTCTTCTTCATCGGATGATAAATCTAATCATAAAAAAACTAA TGTTAAAAGGAGCAGCCATAAGCACTCATCAAAAGCCCATTGCGATTCTCAAGAGTACAGCAGAAAGTTTAGTTTTGATC GCTGGCATGGAGATCAAAAGAGCAGAGGTGGGCATTCTTATTCATCTGAAAATTCAGATATTGACAAGGATGATCAAAGT AGAAGGATCAAACAAAAGCATTCTACTACATCGAAGGGTTCTGAACATACGAGTAAACAGAGCAGGAAAAAGCATTCTTA TTCATCTAAGGATTCTGGTGCTGATAGATATCACACAAGTGAAAAGGGCAGATGTGATGATGGGGAAAAGGAAAACCATC ATAAGCTGAGAAGGAGCAGACACAAGCATTGA
Protein sequence (LotjaGi2g1v0349500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGEEGGGIRLSKRFSDDNKGGAGSEVDYKTKSGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQTHANRERRTEEVAREYA QEQEFYRQTNLISKKDKEKVELMQAVSFMYVRPPGYNAESAKAAEMNDQTKREEMTSETNADAPPSSSLPPSRVNDEKKK RRPKDVFGRTLPTEEEFKVLKNAPKLETGVAGRAKPFGVEVRNVKCLRCGSYGHQSGDRECPLKDSIMPNEESRLKRDDP LNAIIAHTDPTEPLKWELKQKPGISPPRGGFKPDDPNQQIVAADDIFDEYGGFLNMDSIPDLLTNFSKKPKKSKKSKHKK QQLVHSETEASSDDGEKRSKKKKVKVNKKKRSHAESSSSDTSVSEKDHGKSRHKSSYSSEDSDSNVKDRSKRTKHKHSFS PKGSDQPRHTRSKHRRQRHSSSSEGSGSDGYHESYKNSDKHSFSPEDSDNDKDDRSRKDIQKHKRKQRKRHSYSDDDSGA AGYHVYHKSRDEQSSSSDDKSNHKKTNVKRSSHKHSSKAHCDSQEYSRKFSFDRWHGDQKSRGGHSYSSENSDIDKDDQS RRIKQKHSTTSKGSEHTSKQSRKKHSYSSKDSGADRYHTSEKGRCDDGEKENHHKLRRSRHKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 24 | 477 | 454 | 1.2E-167 | ||
| SMART | 46 | 82 | 37 | 1.6E-10 | ||
| Pfam | 47 | 82 | 36 | 1.8E-11 | ||
| MobiDBLite | 120 | 169 | 50 | - | – | |
| MobiDBLite | 153 | 169 | 17 | - | – | |
| MobiDBLite | 257 | 278 | 22 | - | – | |
| MobiDBLite | 299 | 623 | 325 | - | – | |
| MobiDBLite | 322 | 340 | 19 | - | – | |
| MobiDBLite | 351 | 389 | 39 | - | – | |
| MobiDBLite | 433 | 460 | 28 | - | – | |
| MobiDBLite | 470 | 505 | 36 | - | – | |
| MobiDBLite | 517 | 614 | 98 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription corepressor activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A third class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators. |
Expression pattern of LotjaGi2g1v0349500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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