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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0349900 |
| Transcript ID | LotjaGi2g1v0349900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Conserved oligomeric Golgi complex subunit 6; TAIR: AT1G31780.1 oligomeric golgi complex subunit; Swiss-Prot: sp|Q3SZI7|COG6_BOVIN Conserved oligomeric Golgi complex subunit 6; TrEMBL-Plants: tr|G7K401|G7K401_MEDTR Oligomeric subunit 6; Found in the gene: LotjaGi2g1v0349900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82659812..82665969) extracted from Lotus japonicus Gifu genome v1.2.
TGGAGTTACCGAAGATGCTAAACTAACTGTTTTTTTTTTTGGGTGAAAATCTGGCCCAATTAAGTTCGGGCTCATTAAAC CGGAGCCCATTATACATCTACCCGGTTCACCCGAACCGGGTTTAGCGAAAAAAAATGGAAGAAACTCGAGAAGGAAGAAG CTATAGATCGATCGAAGATCTGAACGGAGATCGGAGAAGAAGAAGCAGAAGAGAATGGGAACGACGGTGGCGGGTTTGGC GCCGGGGCTATCACGGAAGCTGAAGAAGGTTCTAGAATCGAGGATCGATACGCCGGATCTCTTGTCATCGCTCAACACGC TCTCTTCCTTCTACGATGACAACACTCCTCAGGCGCGCCGTAACCTCCGATCCACCATCGAGAAGCGCGCTCTCTCCATC AACCATGAGTTCCTCGACGCTTCCCACGCCGTTCAACTGGTAATTCCTCTTCGCCGCCACCTTCTGTTTTCTTCGTATGC CACTGCATTGTATGAATTATGATTCACTTGCTTCTGCTGTTCTGATCTGGTTCAGTACCTTTTTATTGCAGGCATTGGAT AGCGTGGAGGACGAGGTCAATGCGCTTGCCGAGTGCTGCGATAGGTGCGGTTTTCGATTTCAGTGTTCCTTAGTTGCCAT TGGTTGTTTACATGTTTATCATCTGCACCAGTAGGAGATTTGTGTGTAGCTAGATATTGTGTGCTTTGATTCCGAATGCC GTTGACTGGAGCTCGATTTCTGTGCTTTGTTGAGATATTGAGCTGCATCCGCTTATGCAGTACATGCTTAGTCTTAGTAG GGCTCTTATATCAATTGTAGCTGAAAAATGTATTCAAAATGAGATAATAGGGGGGAAACGCGAGTAATTAATCCTTTCCC ATCCAAGTAAAAAGCATCCAGTAGAGATATTGTTAACATTTTCACTAAAAATTTGTGAGGTATATGAGCTGTCAAATTAA TGATTGTTTTGAATATTGGAGTAGGTTATTGGTTTTTAGGAACAATGTCACCTATTTGTTGGAGAATGAAGTGTGCTTAG GCAATGGCTGATGTGTTTGTTTTCTAGGACCATAACTTAATTGAGAAACTGTAGGGTTGGATTTTTCATTTGCTACCCTG TGGGCTTGTATTATGCAGATGAAGGAGACTGATGCAGTTAGAAAGAGATAATTTCTCTTTGCTCAGGCATTCAACATTTA AGGGGGGAGGCTACACTAGTTATTAATCACTATTAGGATTACTATTTTCGTGATTGTATCCCTGTAATTTTGTTATTCTG GTGCTTTGTACATGGATGCCTTTCACTCAAGCACAGATGAACGTTTCATTTGGGAAAAAATATGTTGCTCAGCACAAAGT GTGTCCAGAGTTCTTGTTCATATTTAGAATGCTACTAGGAATACTAGTGGGTGATTTAGCAGCAATAATTTGGAAAAAAT TATCAAGTTATACACAAGGAAGTTCCATGATAGCCAGTGTGCTAGAGTTGAGTATGATTTGTGATCAAGATATTCAATTT TTGTATTTATTGTGTGGTGTTGGTGTTGGCTTATGATTCCTCCTTTTAGTTTAGGAGTTGTTTAGCACTTTGTTGGGTTT AGGATTTAAGTTCTGCCTCGTAGCATATCAAGTTTACCTTTGAAACGTATCATTGTCTCATTGTTATTTCAACGAGAATA ATAAGTTATTTATTTTGCTAGCCAGTAGATCTTTCGATAAAATTTTAGGTTCTATACTTTTACAGGATAGCAAAGTCTTT GAACAGTTGTAGTGCTAGCACCGGTGACATTATCAGTACCACAGAAAGGCTCAAACAAGAGCTTGAAACTACTACACAAA GACAAGAGATTGTGGCATGTTTCCTGCGTGATTATCAGCTCTCCCCTGAAGAGGTTTAAGTTATTATCTGAATATCTGAT GTCTTACCTATTATTGGACTATGGATTTGTGAATTAAATATGAGATCCATCTATTATGTCATTTCTTACAATTAGTTTTT GATCATCTGTAGATAAACGCACTTAGAGATGAAGAGCTGAATGAAAACTTTTTCAAAGCATTATCTCATGTCCAAGAGAT TCATGCCAACTGCAAAGTGTTGCTTAGGACACATCATCAGGTAATATTCTTGTCTACTCTACCCCCCCCCCCCAATTATG TGTGCAAATCTGCATATGTAATCCAAAGTCTGAAGTCTTCTAATTTATCATTCTGAAATTAATTGTAATCTTTATTGAAC TGAGGAATTTCATTGCAGCGTGCTGGTTTAGAGTTGATGGATATGATGGCTGTGTATCAAGAAGGAGCTTATGAGCGTCT ATGCAGGTGAAGACTCATCTATCTTTGTGATTTAAATACAAATATGAAGTGTAGATTTTTCATCTTTTTATGTGCTGTTA GTCTGAATATCAAAGGGTTTTATGAGCTGTTTCTCTTAATTGAGATTGGCTAGTTTGATAATATATATAACTACTATAGT CTTTACTTCTAGGTGGGTTCAGGCCGAATGTAGAAGGCTGGGTGACACGGACAATCCAGAAGTTAGTGAGCTTCTGAAAA CAGCTGTACGCTACCTCAGGGAAAGATCTGTCCTTTTCAAGTATTGTGCAGAAGAGGTAATTTTGTTATGAATTTTATCA ATTTATTGAAAAATTGTCAAATGTCATTTTTCATGCACCATCTAATGGTGACTAGGATAAAATAATTGCTTGAGGACCTT ATCTTAATAAAAATATGGAAAGAATGTTCTTTGTTGTCAAATTGAAACTTTTATTGTCCTTATCATCGTATGCGTGTGCT TCATAAATTCTTGATTAACTAATTTTGCAGGTAGCCAATATGAGACACAATGCACTTTTTAGAAGGTTTATAAGTGCTCT TACACGTGGAGGCCCTGGTGGTTTGCCTCGACCAATTGAAGTGCATGCTCATGACCCATTGCGATATGTTGGTGATATGC TAGGCTGGTTGCATCAGGTATGACATGTAAACTTGTCGATGAATGTTTGAAGCCTCTTCTAAATGCTGTTTTTCTACCCT GGTTTAATTTTTCAGCTTATAATTTTTGTATATGCATACAGGCCTTGGCATCCGAACGTGAACTTGTGCTTGTATTACTT GATCCAGATGCAAGTGTGGACACTGGACCGACAGCAAAGCAATTCTCCAATAACTATGACAGTGGCTCTGCGAAGACAGA ATCTGACTTGATATTTGTTCTTGATAGAATATTTGAAGGAGTATGTCGGCCATTTAAATTGAGAGTTGAACAAGTATTGC AGTCTCAACCAAGTCTTATAGTCTCCTACAAACTCAGTAATACACTTGAATTTTACTGCTACACTGTGAGTTGTCATTTC TGTTATTTTTGTACTTACAGTAGAAATCCCATATGTATATAGATCTGTTTGACTTATTCTGGTCTTATAGATGTCAGATT TACTTGGGCGGGAAACTGCACTTTGTAATACACTATGGGCACTGAAAGATGCTGCTCAGAAAACATTTTTCGATATTTTG AAAGGTCGAGGAGAAAAGCTTTTACGATATCCCCCACTTGTTGCTGTTGATCTTTCCCCTCCATCTGCAGTGAGGGAAGG AGTATCTGTACTTCTTGAAATAATTGACAACTATAACAGCATGATGGTTCCTGCATCTGGGCAAAAACCTGTTTTTGATC CAGTTATATCTGCTATACTGGATCCAATAATTCAGGTATGTTTCTCTATCTGGTTCCTGCATTTGATAGCACAGCTATTC TGTGTAATCGTGAAGTAAGTGATGTGAAATTATGAATTTGTTATTCTAAAATTTGACCTCCTTTTGTAGTATCATAAGGT TACTCACATACGGGTAGTCTTTGAAAATCTCTGCACTTAATCAATATGACCCATTGAGATGCTGCAAATATCTGCATAGA ACCACGGTCCTTGGTTTCCATCATATTGCTATTATTTGAAACTTAGGGAGTTTCTCGTGGTTCTTGTGGGGCTAAGACTG GTGTTTGATAATGTTATCACTGTTTAGTCTGCTCATTTCACTAAATTTATGTGTGTTTCCTTCTCCTGCAAATATTCTTG TTCTAAACATGTGATTACTTGAACTAGTTTGTGTATTATTCCTGGTTCTCCCTGATGATTTAATAAATCATGCTTTGCAT ACTCCCATCTGTGAACTAGTTGGTTTAGTGCTATGCTCAAGGATAACGGGAACATCCAATTTAAAGGCAGCTCAAAATTG TAAACTGATGGATGTTCATTTTTAAAAGACTATTGGCAGTAATTTTAATGAATTGTAGGATATCATAGCTTTAGCTTTGT ATTTGTTGCAGATGTGTGAACGAGCAGCAGAGGCACACAAGTCAAAGGGAGCTGGCCACTCATCAAGGAGGAGTAGATCG AGTTCTGACTCTGGTCAACTAACTAGATCATCAGTTGATGCAATCTTGTCAAATAGCAGTTCTACATCATCCTCACTGGT TCGTTCTTCCTCCTTTTTCTTATCTAAAGAATACTTGTTTTCCATGCTCTTTTGGGTTTACAGATATTTCTTGCTAGTTG AATTTTAGTTTTAGACCCCTTTTAATAAAATTCTGCTTTTCGTAGAACTTAAATCCTGTGTGTTTTTATCAATTATTATG CCTATTTTATAACAAATGAAAATATTCCTGATGATCTGCAGTTATACATGCTTTTATTGTGCCCATGACGGTGCATGAGT CCAGCTTTACAACCTTTTAATATCATTCCAGCAAAAAATTAAATGAACTTTAATAGGGATCTAGTCATCTAGAGACTAAA ATTGAAATATTCTGTAATTTTACTGGAACTTTTTTCTTAAAGAAATACCATGTCAAGCTGTGAATGTAAAATCATGTGGA CCAACAAATAAAGTCATGTGTTCAAATCAAATACAAAACTATAGTAATTATCATTGTGTAATTGGACCAACAAATACAGT GGAAGAATTAAAGAACTTCAAAACATATGGAAACATTACACGGTCACTCTCTGAGCTTTTTTTATTACTTGGTTCCTTTT AGAACTTTTATTATTCAATATACTAGTTCTGTATCTGTATGACATTTGCCTTAACCTATGTTTTGCAGACTAGTGAGACT CCCTCAAAGATCTTTCTCATTAACTGCTTGTGTGCTATTCAACAACCTCTATCTGGACACGTGGTAGCTGCTGAGTATGT GAAAAGGCTTGGAACTATGATAGATAGCCACTTGCGAGTCCTTGTGGATAAAGAAGCGGATGCGATATTAAGAAAATGTA ATTTGTCAGAAAAGATGCCCCAGTTCCGCAATTCAGTCCATAACAAGGGGGGTGATGAAGTTAGTACCCCATTGGCTGAG ATGGAGGACACAAGTCCATCCATTCTTTCAGAGTGTTTGAAAGCTCTGTTTGGTCTTATTTTGGGAAGCGAAAGTTCCCT GCCTGAGTTTGAACAGATGCAGGTTCCAAGGTTGCGTTCTGAAGCTTCTATAGGTGTGGCCAGGTCGCTGGCTGAAGCTT ATGAGCTTATTTATAATGCAATTATGGATCCCAAGAATGGCTATCCAGATCCCAGATCTTTGGCAAGGCATCCTCCGAAT CAGATAAGAACTATACTAGGAATATGAGTTCTATTCAACGTTTTGCTCCTACCCTTGCTATGTTTGTTACGTAAATAACC TTTCTTCTCTCTTTCTATTTCTCTCCCCCTATACCATTTGAAATTGTACTAATATCCAGCTGATAAATTCTTTGATCTAC TTAAAACTTTGAGATACTAAATACTGGAATTCTATTTCTGTTGTCTGCAATGAATTAATTATAGATTTTCATTACAAGTT TCTATGAAATGCTTTAGAAGTTGCAGTATCAAAGGTCACATTTTGGATTTGATTCCTCTAAAATAAATGGGATGTGCTAT AGAGAAAGAGGTAAAATAACTACAAATAAATACGTATCTTTTTTTTGGTACAGACAAATAAATACGTATCTAAAACAAAT TATCTCAATCATCAATTTTTTATTAGTTAGTACTCTCACCGGTCCTTATTATAATAACTTGGCCCTTTTTTACAGGAATG AGCTTGAATTTTGAACTACATTAATTATTTTTTTGACAAATGTCTTTACTTAATTATATATTATAATTATAATATTAC
CDS sequence (LotjaGi2g1v0349900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACGACGGTGGCGGGTTTGGCGCCGGGGCTATCACGGAAGCTGAAGAAGGTTCTAGAATCGAGGATCGATACGCC GGATCTCTTGTCATCGCTCAACACGCTCTCTTCCTTCTACGATGACAACACTCCTCAGGCGCGCCGTAACCTCCGATCCA CCATCGAGAAGCGCGCTCTCTCCATCAACCATGAGTTCCTCGACGCTTCCCACGCCGTTCAACTGGCATTGGATAGCGTG GAGGACGAGGTCAATGCGCTTGCCGAGTGCTGCGATAGGATAGCAAAGTCTTTGAACAGTTGTAGTGCTAGCACCGGTGA CATTATCAGTACCACAGAAAGGCTCAAACAAGAGCTTGAAACTACTACACAAAGACAAGAGATTGTGGCATGTTTCCTGC GTGATTATCAGCTCTCCCCTGAAGAGATAAACGCACTTAGAGATGAAGAGCTGAATGAAAACTTTTTCAAAGCATTATCT CATGTCCAAGAGATTCATGCCAACTGCAAAGTGTTGCTTAGGACACATCATCAGCGTGCTGGTTTAGAGTTGATGGATAT GATGGCTGTGTATCAAGAAGGAGCTTATGAGCGTCTATGCAGGTGGGTTCAGGCCGAATGTAGAAGGCTGGGTGACACGG ACAATCCAGAAGTTAGTGAGCTTCTGAAAACAGCTGTACGCTACCTCAGGGAAAGATCTGTCCTTTTCAAGTATTGTGCA GAAGAGGTAGCCAATATGAGACACAATGCACTTTTTAGAAGGTTTATAAGTGCTCTTACACGTGGAGGCCCTGGTGGTTT GCCTCGACCAATTGAAGTGCATGCTCATGACCCATTGCGATATGTTGGTGATATGCTAGGCTGGTTGCATCAGGCCTTGG CATCCGAACGTGAACTTGTGCTTGTATTACTTGATCCAGATGCAAGTGTGGACACTGGACCGACAGCAAAGCAATTCTCC AATAACTATGACAGTGGCTCTGCGAAGACAGAATCTGACTTGATATTTGTTCTTGATAGAATATTTGAAGGAGTATGTCG GCCATTTAAATTGAGAGTTGAACAAGTATTGCAGTCTCAACCAAGTCTTATAGTCTCCTACAAACTCAGTAATACACTTG AATTTTACTGCTACACTATGTCAGATTTACTTGGGCGGGAAACTGCACTTTGTAATACACTATGGGCACTGAAAGATGCT GCTCAGAAAACATTTTTCGATATTTTGAAAGGTCGAGGAGAAAAGCTTTTACGATATCCCCCACTTGTTGCTGTTGATCT TTCCCCTCCATCTGCAGTGAGGGAAGGAGTATCTGTACTTCTTGAAATAATTGACAACTATAACAGCATGATGGTTCCTG CATCTGGGCAAAAACCTGTTTTTGATCCAGTTATATCTGCTATACTGGATCCAATAATTCAGATGTGTGAACGAGCAGCA GAGGCACACAAGTCAAAGGGAGCTGGCCACTCATCAAGGAGGAGTAGATCGAGTTCTGACTCTGGTCAACTAACTAGATC ATCAGTTGATGCAATCTTGTCAAATAGCAGTTCTACATCATCCTCACTGACTAGTGAGACTCCCTCAAAGATCTTTCTCA TTAACTGCTTGTGTGCTATTCAACAACCTCTATCTGGACACGTGGTAGCTGCTGAGTATGTGAAAAGGCTTGGAACTATG ATAGATAGCCACTTGCGAGTCCTTGTGGATAAAGAAGCGGATGCGATATTAAGAAAATGTAATTTGTCAGAAAAGATGCC CCAGTTCCGCAATTCAGTCCATAACAAGGGGGGTGATGAAGTTAGTACCCCATTGGCTGAGATGGAGGACACAAGTCCAT CCATTCTTTCAGAGTGTTTGAAAGCTCTGTTTGGTCTTATTTTGGGAAGCGAAAGTTCCCTGCCTGAGTTTGAACAGATG CAGGTTCCAAGGTTGCGTTCTGAAGCTTCTATAGGTGTGGCCAGGTCGCTGGCTGAAGCTTATGAGCTTATTTATAATGC AATTATGGATCCCAAGAATGGCTATCCAGATCCCAGATCTTTGGCAAGGCATCCTCCGAATCAGATAAGAACTATACTAG GAATATGA
Protein sequence (LotjaGi2g1v0349900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTTVAGLAPGLSRKLKKVLESRIDTPDLLSSLNTLSSFYDDNTPQARRNLRSTIEKRALSINHEFLDASHAVQLALDSV EDEVNALAECCDRIAKSLNSCSASTGDIISTTERLKQELETTTQRQEIVACFLRDYQLSPEEINALRDEELNENFFKALS HVQEIHANCKVLLRTHHQRAGLELMDMMAVYQEGAYERLCRWVQAECRRLGDTDNPEVSELLKTAVRYLRERSVLFKYCA EEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASERELVLVLLDPDASVDTGPTAKQFS NNYDSGSAKTESDLIFVLDRIFEGVCRPFKLRVEQVLQSQPSLIVSYKLSNTLEFYCYTMSDLLGRETALCNTLWALKDA AQKTFFDILKGRGEKLLRYPPLVAVDLSPPSAVREGVSVLLEIIDNYNSMMVPASGQKPVFDPVISAILDPIIQMCERAA EAHKSKGAGHSSRRSRSSSDSGQLTRSSVDAILSNSSSTSSSLTSETPSKIFLINCLCAIQQPLSGHVVAAEYVKRLGTM IDSHLRVLVDKEADAILRKCNLSEKMPQFRNSVHNKGGDEVSTPLAEMEDTSPSILSECLKALFGLILGSESSLPEFEQM QVPRLRSEASIGVARSLAEAYELIYNAIMDPKNGYPDPRSLARHPPNQIRTILGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 693 | 688 | 5.6E-244 | ||
| SMART | 31 | 693 | 663 | 6.4E-231 | ||
| Pfam | 33 | 693 | 661 | 1.2E-229 | ||
| MobiDBLite | 484 | 509 | 26 | - | – | |
| MobiDBLite | 492 | 509 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intra-Golgi vesicle-mediated transport | The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). | ||
| Cellular component | Golgi transport complex | A multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p). In mammals the subunits are named COG1-8. |
Expression pattern of LotjaGi2g1v0349900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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