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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0355100 |
Transcript ID | LotjaGi2g1v0355100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tail-anchored protein insertion receptor WRB; TAIR: AT4G16444.1 tail-anchored protein insertion receptor WRB-like protein; Swiss-Prot: sp|Q3SZ26|WRB_BOVIN Tail-anchored protein insertion receptor WRB; TrEMBL-Plants: tr|I1J8C8|I1J8C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0355100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83132870..83135809) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATCACATATATTGAAATAGATCGAATGCACGGAGGGAGAAAAGTGAGTTATGGGAGACGAAGCAATTACCCAAGAA CGTGAAAGGCCGTTAGCGGCTCCTTTCATCTTTATGATTGTTGCTGCTTTTCAGTTTGCATATTATTGTCTTGATCATCT CAACAAGGTAGGTATATCATCATCATCACCATCTTCAATCTCACCTTTCGAATTAGCAATTTGTGATGCTAATCCTTTCA AAATTTCCAATCAAGTATTATAGAAAATGAGATTTCATATCATGTTTCCAATTAAGAAAAATTTCAACCCCAAATGATTG AAAATGAGATTTCATCATTTTTTCCTGATTTTCTTTTTATGCATGCAGAACGGATCTGGCAATGAAAAAGGAATTCAACT GCGTAAAGAAATAAAACAAATTTTGAAGCAGGCGAGCCTAATGTCACAGTGAGTAATTCATTCACAATGCTACAAGTTAT TCATCCTAATTTGGTCATTATATAATTACACGGTTGTTCTTCTTGTTATTGTTTTTCATCCAAAGCCTTGTTTATAAATC ACTAAAAATGTCATGATTGTACGATATGATTGAAAAGCTATGCACATATGATTTAAATATTTATAATTATGTGTGTGTGT GTGTGTTTATGGGAAAGAAAGTATATATGGGTATTTTCTTCGTGTTCTATTAGGCCATCAACCTTTGCACAAGCAGCAAA ACTCAAAAGATTGGCAGCTGCTAGAGAAAGGGAACTTGCAAAGTGTAAGTTTATCCTATATTGCGAGCTATTTTACATTC TCATATTGTGCTATATATATGTACTGTAATGCAGGAAGCAATGCCTAAACACGACGCATGCCCGTTTTCAAAAGTTTATT TGAGTTTAATATATAGCATAAATGTTTATGCTAGTGTTATGAAGAACTTATAACTTGTCTATTTATAAGTTGTTTTGAGC TTATTTTTGTAAGATGTTCAGATTGACTTTATGAATAAGCACTTAAGCTTATCTATAACATATTTTCAGCATATTTCAGT AACTTTTTTAAATTAGCTTATGGATAAGTGCTCATGCTATAAAAGCTTATTGCCATAAATGTTTAGTTACATTGTTTACC CAAACACATTCTTGTTATAACTAGATGAACACATAGATTCAGTTATGCATTGTTTGAACTAAGTGTACAACCTTTCACGA CTCAAAAACCTAAGTTGTGATTGACGCCGACTCACCCTAGCCTCACAAGCCTATTCCTAGGCGTCTCATTTCCTCATGAT AACTTTACAAGATAAACATGTTTCCAAAGTTAAAAAAAAAAATATGACAGAGTTATCTTTGTATTTTCAACAATTTAAAA ATAATACGACCAATAAGAATTACACAAGTAACAACATCACCAAATACATCAGAGTTTTACACTTACAAAATATAACCACT ATATACACCCTAAAGTTGCAAAGTATAACAAAAAGATAACAAAAGACATCAACATGATTGACAACTAAAGGAGTCCTGCC AAAAAGAAAGAATTGAACAATTTGTATTTGAAGCAACCTCCTACTCAACTGCACATTTGAATCTGAACCACTATGTTTCT AATTTTTATATTATATTATTTTTCTATTTGTTGATTAATTAATCAACTATTAATCTTCTATTCCACAAGTTTATAGAAAT TTTGTTTAACTAATTCGCAGATCAAAATTCATATCACAGAGATCATGTTCTGTATTCAAGGGTGTTGCTCTTCTCAAAGG TAAATTCAAATATAGACTTTACATATTTTTCTCTGTGGAGGCTTATGAGATACTTTTTTTTGTGCCTTGTAGTATTTAAT ATATGGGGTGCTTCTTATTTGGTATTGGCGTGTTCCCGTTGCTAGCGTATCTCAACAGCTTGTGCAACCATTTGGTAAAT AATTATGAAACTAAAGTCATCCTTATTTTATTTGATTTTCTTAAAAGCCCAACAGGGTAAATGACACATGTAAATGGAGA AATAATATGAGTATAAACCAATAAGCTTTTTCTTTGAATTCTGATCATGTGATGCACTCTTTGCAGGGAGATTATTATCT TGGAAAAGTGGAGGAGTTCATGACAATGAAGTTGTGGTAAGCAATTGCTCGTAACATTTTTCAGTACACTTCTTTGGCTC TAAAGTCATGTTATTGCCATTTTGAATACAAGACGGATACAACATTTGAATATGAAAAGTTTTAGAAAGACGGATACAAC ATTTGAATAATATTTTATTAAGAATTTGTTTTCTTCTTTTGGATGGACCATCGCCCTTTTAAATATATTTCGGTTCTCAT CTGATTTTATCTGCTTATAATTAAAGAACTCATCACTTGATTTGATATTGAGTAAAAACTTGTCCAAATCATAACTACTA CGCCATGAGAGAGTACTTTGAAATTTGAATAAAAAGAATTTAAAGAACCAAAACATGAACAAAATTTAGTGGGGCTATTT TTTCTTGAACTTATAGTCATTTCAAATTGTTTGCATATCATTTCAGGTTGGGATAATATCTTGGCTAATAGTGTCAGGAA GGGTTTGCAGATTTGTTCGTCAAACCTATCGTAAACATAGATAATTGTGATTTTCATCGTGCAATAACACAAATTGCAAG CTCCCAAAATGTTGATTTTGAAGTGGCATGAGTAGATGTTAATATTTCATAGATACATTTGTAATAAACATTGTCTTATA TTTTTTTATCAGTTTGATTGATCAATGATTCAGTTTGTAACTTGTAAGTATTCCAAATAGCTTAAAGTGTTCACTTCTAG AATCCACTGCTTCATGTAATTGTCATGTAATATTTTATTTTTCACAAGTGTTAATGAAGATTAATAATTCTATCATCTTA TGCAAGTTATATTTCAAGCGGCTTTGGGGATCCTCCTCCTTTTATGGAAGCTTCTTCTCA
CDS sequence (LotjaGi2g1v0355100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGACGAAGCAATTACCCAAGAACGTGAAAGGCCGTTAGCGGCTCCTTTCATCTTTATGATTGTTGCTGCTTTTCA GTTTGCATATTATTGTCTTGATCATCTCAACAAGAACGGATCTGGCAATGAAAAAGGAATTCAACTGCGTAAAGAAATAA AACAAATTTTGAAGCAGGCGAGCCTAATGTCACAGCCATCAACCTTTGCACAAGCAGCAAAACTCAAAAGATTGGCAGCT GCTAGAGAAAGGGAACTTGCAAAGTATCAAAATTCATATCACAGAGATCATGTTCTGTATTCAAGGGTGTTGCTCTTCTC AAAGTATTTAATATATGGGGTGCTTCTTATTTGGTATTGGCGTGTTCCCGTTGCTAGCGTATCTCAACAGCTTGTGCAAC CATTTGGGAGATTATTATCTTGGAAAAGTGGAGGAGTTCATGACAATGAAGTTGTGGTTGGGATAATATCTTGGCTAATA GTGTCAGGAAGGGTTTGCAGATTTGTTCGTCAAACCTATCGTAAACATAGATAA
Protein sequence (LotjaGi2g1v0355100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDEAITQERERPLAAPFIFMIVAAFQFAYYCLDHLNKNGSGNEKGIQLRKEIKQILKQASLMSQPSTFAQAAKLKRLAA ARERELAKYQNSYHRDHVLYSRVLLFSKYLIYGVLLIWYWRVPVASVSQQLVQPFGRLLSWKSGGVHDNEVVVGIISWLI VSGRVCRFVRQTYRKHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 13 | 13 | - | – | |
PANTHER | 14 | 172 | 159 | 7.9E-43 | – | |
Phobius | 14 | 33 | 20 | - | – | |
PANTHER | 14 | 172 | 159 | 7.9E-43 | – | |
TMHMM | 15 | 33 | 19 | - | – | |
Phobius | 34 | 98 | 65 | - | – | |
Coils | 72 | 92 | 21 | - | – | |
TMHMM | 98 | 120 | 23 | - | – | |
Phobius | 99 | 120 | 22 | - | – | |
Phobius | 121 | 150 | 30 | - | – | |
Phobius | 151 | 169 | 19 | - | – | |
TMHMM | 151 | 168 | 18 | - | – | |
Phobius | 170 | 177 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0355100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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