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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0357100 |
Transcript ID | LotjaGi2g1v0357100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF241 domain protein; TAIR: AT4G35690.1 hypothetical protein (DUF241); Swiss-Prot: sp|B0K250|Y240_THEPX UPF0309 protein Teth514_0240; TrEMBL-Plants: tr|I1J8F0|I1J8F0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0357100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83328376..83329425) extracted from Lotus japonicus Gifu genome v1.2.
GGACTTTGTAAAAGCACATAAACAAACATTGAGCTACCTCTGAAAGAAAAAATAACAACAGAACAACAAAAGAGCAATAT GGCAAACAAGTACCATGTTCGTTCAAACAGTTTACCTTCTGGATCTAATCAAAGCTCCATTAGAATAGAAGAAGAGCTAA GCAAAATCCAGACTTGGGAAGCCACATCCACATCCACATCTAACTCAATTGGATCTGGCCTATCCTTGCTTGAAGATTTG TTCATTAGCTTGGAAGATCTTCTCAACATGGCTTCAACCCAAAAGGCGATTTCTCAACATCAAGGTGAGAAGTTTGTGGA AGAACTTTTGGATGGCTCAGTGAGAATCTTGGATATCTGTGGCCTCACAAGGGACGCCATGTTACAAATTAAGGAACATG TTCAAGAACTTCATTTTGCTCTTAGAAGGAGAAAGGGGGACTCAAGCATTGAAACAAGTGTAGCCAAATACAACTCCTTC ATTAAAAAGATGAAGAAGAATGTCAGAAAGATGGTCACATCTTTAAAGCACATGGATAGTAAATTTGGAGCATCCTCACT CTTGAATCAAGATCAAGACCTTGCTACTGTGATAAGAGTTCTTAGGGAGGTTATCACAGTGAACATGTCTGTCTTCCAAT CCCTTTTGTCTTTCTTAGCTGGGTCTGCTTCGAAATCAAGGAAATGGTTGCTGGTGGCAAAATTGATCCATAAAGGGGTG ATATCTTCTGAAGAGAACTTTGAGAATTCCAATGAATTGCATTCTTTAGAAGCATTTTTAAGCAGCCTTGTAACTGAAGG TGCTAATGCTGAGAAGATGCAGGCTGCACATGAAAGAATGGAGTCTTTGGAGAATGCCATTGAAAGCCTAGAGAATGGTT TGGAGAGTATCTTTAGGCACTTGATTAAAACAAGAGTCTCTCTTCTGAACATAATGACACAATAGCTTAGGAATCTTCTG AGGATTGAAAATTTTTGCCTCATCAATTTTTGTACATGTATATAATTCAATAGTTATACAAATCAAATACAGTGACAAGT TAATACTCTA
CDS sequence (LotjaGi2g1v0357100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACAAGTACCATGTTCGTTCAAACAGTTTACCTTCTGGATCTAATCAAAGCTCCATTAGAATAGAAGAAGAGCT AAGCAAAATCCAGACTTGGGAAGCCACATCCACATCCACATCTAACTCAATTGGATCTGGCCTATCCTTGCTTGAAGATT TGTTCATTAGCTTGGAAGATCTTCTCAACATGGCTTCAACCCAAAAGGCGATTTCTCAACATCAAGGTGAGAAGTTTGTG GAAGAACTTTTGGATGGCTCAGTGAGAATCTTGGATATCTGTGGCCTCACAAGGGACGCCATGTTACAAATTAAGGAACA TGTTCAAGAACTTCATTTTGCTCTTAGAAGGAGAAAGGGGGACTCAAGCATTGAAACAAGTGTAGCCAAATACAACTCCT TCATTAAAAAGATGAAGAAGAATGTCAGAAAGATGGTCACATCTTTAAAGCACATGGATAGTAAATTTGGAGCATCCTCA CTCTTGAATCAAGATCAAGACCTTGCTACTGTGATAAGAGTTCTTAGGGAGGTTATCACAGTGAACATGTCTGTCTTCCA ATCCCTTTTGTCTTTCTTAGCTGGGTCTGCTTCGAAATCAAGGAAATGGTTGCTGGTGGCAAAATTGATCCATAAAGGGG TGATATCTTCTGAAGAGAACTTTGAGAATTCCAATGAATTGCATTCTTTAGAAGCATTTTTAAGCAGCCTTGTAACTGAA GGTGCTAATGCTGAGAAGATGCAGGCTGCACATGAAAGAATGGAGTCTTTGGAGAATGCCATTGAAAGCCTAGAGAATGG TTTGGAGAGTATCTTTAGGCACTTGATTAAAACAAGAGTCTCTCTTCTGAACATAATGACACAATAG
Protein sequence (LotjaGi2g1v0357100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANKYHVRSNSLPSGSNQSSIRIEEELSKIQTWEATSTSTSNSIGSGLSLLEDLFISLEDLLNMASTQKAISQHQGEKFV EELLDGSVRILDICGLTRDAMLQIKEHVQELHFALRRRKGDSSIETSVAKYNSFIKKMKKNVRKMVTSLKHMDSKFGASS LLNQDQDLATVIRVLREVITVNMSVFQSLLSFLAGSASKSRKWLLVAKLIHKGVISSEENFENSNELHSLEAFLSSLVTE GANAEKMQAAHERMESLENAIESLENGLESIFRHLIKTRVSLLNIMTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 20 | 20 | - | – | |
PANTHER | 2 | 286 | 285 | 1.0E-107 | – | |
PANTHER | 2 | 286 | 285 | 1.0E-107 | – | |
Pfam | 47 | 285 | 239 | 4.0E-81 | ||
Coils | 247 | 274 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0357100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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