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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0359400 |
| Transcript ID | LotjaGi2g1v0359400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Double stranded RNA binding protein 3; TAIR: AT2G28380.1 dsRNA-binding protein 2; Swiss-Prot: sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2; TrEMBL-Plants: tr|A0A1J7GYX3|A0A1J7GYX3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0359400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85678437..85683473) extracted from Lotus japonicus Gifu genome v1.2.
TCTAGTTTCAACCCCAATCACTATTCCTAGAAAAGATAAAAGATTTCATTTTCAATATCCCATAATGAATTTAATATTTA CCCCAAATAAAAAATATTGCCCTTCTTACTTTTTTCTCATACACTTCCATTCTTCTCCTTTTTCTCTCCTCTTTCTTCTT CCTCTTCTTCTGCTGCTGCAACCTGCAAAACCTTCTTCGTTCCCGCGGCTCAAAACCCCAAAAGCCTCAACCACCGTAGC CTCGCCGGAGAACCCGACCCGGATCGGATCTGGGTGTGTAGAGCATTCTCCGCTGGCCCCACTTTCTTGAGAGAGAAAGT GTGGTTGGGTCTGATAGAGAGAGTGAAAATGTACAAGAACCAGCTTCAGGAGCTGGCGCAACGGAGCTGCTTCAACCTCC CTTCCTACACGTGCCTCCGGGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCACCGTTAACTTCAACGGCGAGACCTTC GAGACCCCTCACTACTGCTCCACGCTTCGCCAGGCGGAGCACTCCGCCGCTGAGGTGGCTCTCAATTCACTCTCCCACCG TGGCCCCTCTCACTCCCTCGCCGCCAAGATCCTCGTAAGTTCCCTCTCCCTCTGTCGGTGCTGCTTCCACTTCCTTGTTT GTTTTTTTGTTATGACCCTATTGCCCTTTGCCATTTTCTTCTATTATTTGGTTTAGTATTTGTGAAATTTGTAAGCTTGA TGAGTTAATGTGCAATGCGAGTTTATGTTAAACAACCGATTATCACAAAAGTTTAAGCTATCGGGTAATGACTAAATGAA TGATTTTATATTATATTCTAACCGCCCCCTCATGCGAGAGCTATTTGGGCTTGAAGCGTGGACAATGAACATGCCCACCT ACCATGTGATTTTTAATTCAACTTTTATTATTAGAAGAATTGGGGGCGGCAGAGATCAAACTCTGGACCGCTTGGTCATA GAGGCTCTGATACTATGTCAAACTTAAGCTTACATTTTTTTTTCTATTGGTTTAATCTGGGTGATGGTGGATTTGATTGT CATGGAATAGAGTTTTGTTGTGAATGGTAAAATTGGTAACAAGTGAATTTTTTACTATATATGATTCATTGTGTACTGTG TACATGTTGTCTTGAAAATAATACATTGCATGTGAGGGTTGAAGTAGAAGTAGAATCATGACCTTTGTTACCTATCTATC ATTGATGTTTCCAATGGAAGGATGTGATTTTGAGTTTAAGTTTATTGGTGGAATTCTTGCTGTTGATTTTAAGTAATCAT TCCTGAGTCATGCTAGACTTTTTTTATAAACAAGGGCATAAGATTTTTACTTTTTTAGAGAGGGATTGAACTTTGCACTT CTCAATTGTGTATAACTTGAGAAAAAGTGTTTTTCCTTTGTATGTTTCTACTGCACGTGATTTTGGCCTGGTTCAGCACC TTCTTGTTATGTCAACTTGGCTGTGTGAAAGAGAAGAAACGAGAAAGGTTGTAAACATAATTTGTTTGATTCACCAAATA TCCAAGAACTTTATCTATTTGAAACATTAAAAAAAAAAAACTTTGATCTTCCCCTTGTCTTGTGGAGTGGAATATGTATG ATTCCCAGCATGTGGTACAGGGTTCCATGTTTTTCTTAAATTTCTGCATGTTACCTCCCATCTTGCCTCAAAAATATATT TTATGCACATTCTAGGAGCATTTTCTTCAAAATATCTTCTTTCTTTGCCTTTGATGTCATTGCTGAGAGGTTTATCTATT CACATTGCATGGGATGTCTTAATTTATCATTGTTAATTGTCCTGTTCATGTACTAATCATATACAAAATTTTAGGATGAG ACGGGGGTCTACAAGAACCTCTTACAGGAAATTGCGCAAAGGGTAGGGGCTCCATTGCCACAATACACAACATTCAGGTC AGGCCTAGGACACCTACCTGTTTTCACTGGGACTGTAGAATTAGCTGGCATTACATTTACTGGTGAACCTGCCAAGAGTA AGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCATGGTCGACTCTTAAGCAGTGTAAGTGGCTAGCTAGCTTTTGTCTG AATAATTTCTTCAATAAAAATATATGGAACTTAACATAAAATCCCCCCGGAATGTAGCATCATAATTTACCATAATGTGG AACAATGACAATACCCTGCTTAGTTCTGTTTCCCTAACTATTGTCATTCCTGAGAGACAAGCAAGTGAACCCGGCTGAAA TGTTAACCTAATGGCACTGTTGGGGCATTGCTGTAACCGTCTATGCTAAACGTTCTCGTGTATTTTCACAACTTAGCTGT AGTAAAGGCCAAAATCTTCTTGAACACATCATTAACAAACCTCCCCAATGCCTTGTACTTGTTTATTTTGGTCCCAACTC CCAAGTGAAATTCCTTTAAAAGAATAAGGTGGGTTTGGGTTGGTGTCTGCCGATGAAAATACATGCATTTTTATGAATCA TCCCATTCGTAGATTCTCAAAAGACACGCATCAAAAGCATATTACATGCGAAATGGTTTTCCTTATCTTTACTGGACTCT AAATTACTTCCTTCATCTTCTTTTTATCTGAGTATTAAGCGGAATGGTTAAGTAGGAACTAGGAACAAGTCATGTGGCTG TTGCGGCTATGTGGAATGGAACAGCCTCTGGCTGCTTTATGTTCTCTGTTGCATCTTTTGTTTCATGCAGATTCCAGTTG AGATTGCTGCCTTTTACAAATGAAATTTTTAATAGCCATGGGATGATGGGAATGGAATTCCTATTCTCTCCACCTTTTTA CCATCACCTCTCTTTTTTCCTCCAGTGAGTCTTTTGTGATTCTAGAGCCTTTTTTTTCATCAGAAGGATTTTAGGGGTAG AAATCCGTTCATCCATTAAAAAATATTCATTTTCTGGCCAAGCCCCTTTTGTTTTTCTGGCAGCACCAGCCTCTGATCTC ATTTCTCTTTGCTCTGTCGCCTTGGTTATGCATCACTATTTCCTCTTTCTTCATTGCTCTAGCCCTTCTCTGTTTCTTTC CCTTTTTTAAAAAAAAAAAAAGATATTTGCTTTATATTTGATTATACTGTTGATTTTGTAGTAAAGGTACTTGCTCTCTT GTTTTCATACTTGTTACTTATTTGATTAGCACCCAAACTTGTTAGACAGTTTTTATGTTACTTGTGTAGTTTTGGCAAGA TCCCATGCACTGTTGTTTCTCTGCTTCAAATTTTCTGTTTGATTATTGACTTATTAATTATGCCTTAAATTGGTGACTGT GTGTTTACTCTATGATTGATAATGAATGTCTTTATTATTGGGTTTTTTTATATTTTTATTTTTGAGCATTTATTTGTGCA GTATTTATCTTGTATTCTTTGATAATATTTTGTTCATCCCTGATCCCACTGCATTTTTTGTCTTGGCCCTTCCTTTCGGT TTCTGATATTTATAACTTTGGTTTTAAGATCTATGTAAATGTTTACATATGAATTGACAATAATTTTCTTTATTGGCAGT GGCAAAAGAAACTTCAAGCTCTTCAACTGAACCAGAGAACAATGATGAATTAGAACAGATCACCATAGCACGGGCCTTGT TGAACTTCCGTCTGAAGGAAAAGATGACAATGTCAAATCCTAATGCTCCAATTCCATTTCCGAAAAAGTTTCAGTTTCAA AATCCCAGGCCAACTAGTCCTCAACCTCTGCCTGCTGCAACATCAAAGATACTTCCCCTATTTTCCCAAAAGACAGCACC TCGAAGCAGGCATCTAGTAACCGCAGCAGCCAGCAGTGGCAATTCAGCAACACAACGATACTATTCTACACCAGAAAGCA GAGGGCCTTGTCGGCCGAATTTCCCAGCAGTAGGAGCAGCACCTTATGTTCCCATTCGACAAATGCGATCACCTTGCCAA GGGATCGCCCCTCCAGTGACTATAAGGACTGCTGTACCTGTATTCTCCCCACCACCGGCCACAGTGTCCCATCATCAAGT AATGCAGGCTTCTTCTATACGAGTTGCTCCTCCGGTCAATATTCGGCAAGCAGTTCCAGTATACGCTGCTCCCCCAGCTC GGATAGATGAACCTGCTCCAATCCGCAAAGATAAAACTGATGTTAAGGCTGAGAGCATGAAGATTGAAGAACCACCAACT GTAAATGCCCCTAGCCAGGAAGATAAAACTGACACTAAGATGCAGAACATTCCTCCAGAATCTGAGACAATGCAGAGCTT GTTGCAGCTGAGAATTTGATGTTCATTGGTGTCACTTTTTTGTGATGAACTAGAGATTACATCTCATCTCAGCTTATTAT GAGTGCTGTAATATCATCCCTTCCTTTGTTGAAATTCGACAGATTAGCATTATCAGTCGAATATCTGAAATTCATGAGCA GGTTATTAGCACATAATCTGCTCATGTTTTTATTTTTAAGTATGTTGGTGATATGGTAGTAATAGTATATCTGTTGAGCG AGCGAGCTTGATTTATTGCTCCTCCATTTTGAGATTATTGCATTTCTTTGCTTCCTATTCCTTCTCCACCACTCTTATTT CAGTAGGCTATTGGGACTCCGCGAGTTTCTTATTGGGATGTTGTGTGATCTGTTGAAAGAAGGACGCTGCCCCATGGTTG TTAATTCATGACAACTGAGAAGCTTTATTGTCAGGATGTTTGGATTAATCACAGAGGCAGTGGCAGAGAACATGCTTTTA TTATCTCGAGGAAATGAAGTTGTTCCTTTCATGGTTGCACACTCTGAACTGCAGGGGCGTATCTAGGTAGGGGCAGGCAG GGGCCATCGCCCCTCAGAACTAACAACTGGAAAAACAACAATATTTCCACTTGTTGATAGATTGATACATCTTGTTTTGA CATTTCCTGTTTCAACAGATCGAATTTACAGAACGATCTTTTTATGAAATGAAAGTTGTTAAGATTTCGGCTTTGCAACA ATTGAAGATGATCTTCTCATAAATTTATTAATTGTATATATCGAGAGAGAAATTGCTGAAGAACTCTATATTGATAC
CDS sequence (LotjaGi2g1v0359400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAAGAACCAGCTTCAGGAGCTGGCGCAACGGAGCTGCTTCAACCTCCCTTCCTACACGTGCCTCCGGGAAGGTCC CGATCACGCGCCGCGCTTCAAGGCCACCGTTAACTTCAACGGCGAGACCTTCGAGACCCCTCACTACTGCTCCACGCTTC GCCAGGCGGAGCACTCCGCCGCTGAGGTGGCTCTCAATTCACTCTCCCACCGTGGCCCCTCTCACTCCCTCGCCGCCAAG ATCCTCGATGAGACGGGGGTCTACAAGAACCTCTTACAGGAAATTGCGCAAAGGGTAGGGGCTCCATTGCCACAATACAC AACATTCAGGTCAGGCCTAGGACACCTACCTGTTTTCACTGGGACTGTAGAATTAGCTGGCATTACATTTACTGGTGAAC CTGCCAAGAGTAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCATGGTCGACTCTTAAGCAGTTGGCAAAAGAAACT TCAAGCTCTTCAACTGAACCAGAGAACAATGATGAATTAGAACAGATCACCATAGCACGGGCCTTGTTGAACTTCCGTCT GAAGGAAAAGATGACAATGTCAAATCCTAATGCTCCAATTCCATTTCCGAAAAAGTTTCAGTTTCAAAATCCCAGGCCAA CTAGTCCTCAACCTCTGCCTGCTGCAACATCAAAGATACTTCCCCTATTTTCCCAAAAGACAGCACCTCGAAGCAGGCAT CTAGTAACCGCAGCAGCCAGCAGTGGCAATTCAGCAACACAACGATACTATTCTACACCAGAAAGCAGAGGGCCTTGTCG GCCGAATTTCCCAGCAGTAGGAGCAGCACCTTATGTTCCCATTCGACAAATGCGATCACCTTGCCAAGGGATCGCCCCTC CAGTGACTATAAGGACTGCTGTACCTGTATTCTCCCCACCACCGGCCACAGTGTCCCATCATCAAGTAATGCAGGCTTCT TCTATACGAGTTGCTCCTCCGGTCAATATTCGGCAAGCAGTTCCAGTATACGCTGCTCCCCCAGCTCGGATAGATGAACC TGCTCCAATCCGCAAAGATAAAACTGATGTTAAGGCTGAGAGCATGAAGATTGAAGAACCACCAACTGTAAATGCCCCTA GCCAGGAAGATAAAACTGACACTAAGATGCAGAACATTCCTCCAGAATCTGAGACAATGCAGAGCTTGTTGCAGCTGAGA ATTTGA
Protein sequence (LotjaGi2g1v0359400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKATVNFNGETFETPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAK ILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEPAKSKKQAEKNAAMAAWSTLKQLAKET SSSSTEPENNDELEQITIARALLNFRLKEKMTMSNPNAPIPFPKKFQFQNPRPTSPQPLPAATSKILPLFSQKTAPRSRH LVTAAASSGNSATQRYYSTPESRGPCRPNFPAVGAAPYVPIRQMRSPCQGIAPPVTIRTAVPVFSPPPATVSHHQVMQAS SIRVAPPVNIRQAVPVYAAPPARIDEPAPIRKDKTDVKAESMKIEEPPTVNAPSQEDKTDTKMQNIPPESETMQSLLQLR I
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 367 | 367 | 1.3E-168 | – | |
| ProSiteProfiles | 1 | 70 | 70 | 12.257 | ||
| PANTHER | 1 | 367 | 367 | 1.3E-168 | – | |
| SMART | 2 | 69 | 68 | 1.5E-19 | ||
| Pfam | 2 | 68 | 67 | 1.5E-15 | ||
| CDD | 2 | 68 | 67 | 4.30401E-18 | ||
| SUPERFAMILY | 2 | 68 | 67 | 1.41E-18 | – | |
| Gene3D | 2 | 86 | 85 | 2.4E-24 | – | |
| ProSiteProfiles | 87 | 155 | 69 | 11.407 | ||
| SMART | 88 | 154 | 67 | 3.5E-20 | ||
| Gene3D | 88 | 170 | 83 | 2.6E-22 | – | |
| Pfam | 88 | 153 | 66 | 2.8E-12 | ||
| CDD | 88 | 153 | 66 | 5.86117E-16 | ||
| SUPERFAMILY | 88 | 158 | 71 | 4.56E-19 | – | |
| MobiDBLite | 243 | 264 | 22 | - | – | |
| MobiDBLite | 243 | 260 | 18 | - | – | |
| MobiDBLite | 345 | 401 | 57 | - | – | |
| MobiDBLite | 346 | 363 | 18 | - | – | |
| MobiDBLite | 372 | 401 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0359400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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