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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0361600 |
| Transcript ID | LotjaGi2g1v0361600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G03170.1 FASCICLIN-like arabinogalactan-protein 11; Swiss-Prot: sp|Q8LEJ6|FLA11_ARATH Fasciclin-like arabinogalactan protein 11; TrEMBL-Plants: tr|I3S9E0|I3S9E0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0361600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85904833..85906454) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAACATAGAATTCAAATCCTCTGTGCCCAAATTGTATTTCATTCCCGATCCCACCAATAAAATTTTGACATGTTAAT TGAAAACAATCATGTAACTAAGTTAGTAACTGCACTCGTGTCTTTTTTTTTTAATTGACATGACAAGATTTCATTTGTGG AACGAGAAATTGAGATGTTGTTTAGAGACAAAAGATCATGATCCAGAAACATTTAGGTTAGCAAATCACAATTTAAGGTT TCATGACAAAACCTTTCACCTACCTGTCATTCTCTCCCAACCTCAATAAAACCCTGCTCCAGCATATCATCAATGCATCA AGTGCTCATTCCAAGTACAATTTGCATATCTTTCCAACATCATCTTAACCTTAATTTACCAAAACCAAAATGGAGATGAT GAAGAAGCAATCTCTCTTGTTCTTTGCACTACTAGTTTCTCTCTTGTATTCCACCACTACACTAGCCCAATTATCACCTG CTTCTGCTCCATTAAAACCTGCCACACCAGTCCCAACCACACCAGCCTCTTCCCCAAAACCACTGGTTCCTTCATTGCCA GAGTCACCAAGTGATTCCACCGCCCCTGACACTGCAGCGGTTGACATTGTTGGAATCCTGCGAAAGGCCAAGTCATTCAA TGTCCTAATCCGCCTCATGAAAACCACTCAATTGATCAACCAACTCAACTCACAGCTCCTAACCATAAAAACAGGTGGCT TAACCATTCTTGCACCAGATGACAGTGCCTTCTCAGAGCTCAAAGCAGGGTTCCTCAACTCTCTTTCTGATGGACAGAAG CTCGAACTTCTACAGTTCCATGTGATTTCAGACTATGTTTCTAGCTCAAACTTTGATACCTTAACAAACCCTGTGAGAAC ACTTGCAGGAGCTAGGCCTGGTAAAGTGGAACTGAATGTGATTAGTTATGGTAGCAGTGTGAACATCTCAACAGGGGAAG TCAACACCACCATCACTGGGATTATATACACGGATAAGCATCTTGCTATTTATAAGGTGGGTAAGGTGCTTCTTCCTATG GATTTCTTTGCAGTTGCTAAAGCACCAGCAAAGGCTCCATCTTCGGCACCAGAACCTTCAGCAGAAGCCCCTAAAGCTGA TAAGGAGAAGCCATCATCAGATGATTCCTCTGATTCATCTCAGATTAGTTCCACAAGCATGAAATCTAGCAGTGTGAAAA TCACTACGTGTGGAAAATGGGTGTCCCTAGTTCTTGGAGTAGCTCTCATGACCGTAGTGTCAACATAAAGCAAACTTGGA TGATTGGGATGATCCAAGCTATTAGCTACCATTATTGATATGGATATTGAAGAGTGCTATTTTGTGTTGTTTTATTGCGA GAAAGGAGTGAATATTACTGTTGTATCTAGTTCTCTCAATTTATTCTGATATAAGAATGTTATACTATGGTTTTATCTAC ATGTTCGCATGCTTTATGATGTTTTCTGAAGAAGAAATGAATAAGGTCAGACACATATAGTAGTTATAAGCAAATAACAA CAAGTTGCACTAGAATGCCGGAAAAAAAATCGACGAGTTGGGAGTCTAAATAACATTGTCTAATTAGATGAGTTGAAGCA ATTGGAATTAGTAATAATCCAA
CDS sequence (LotjaGi2g1v0361600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGATGAAGAAGCAATCTCTCTTGTTCTTTGCACTACTAGTTTCTCTCTTGTATTCCACCACTACACTAGCCCA ATTATCACCTGCTTCTGCTCCATTAAAACCTGCCACACCAGTCCCAACCACACCAGCCTCTTCCCCAAAACCACTGGTTC CTTCATTGCCAGAGTCACCAAGTGATTCCACCGCCCCTGACACTGCAGCGGTTGACATTGTTGGAATCCTGCGAAAGGCC AAGTCATTCAATGTCCTAATCCGCCTCATGAAAACCACTCAATTGATCAACCAACTCAACTCACAGCTCCTAACCATAAA AACAGGTGGCTTAACCATTCTTGCACCAGATGACAGTGCCTTCTCAGAGCTCAAAGCAGGGTTCCTCAACTCTCTTTCTG ATGGACAGAAGCTCGAACTTCTACAGTTCCATGTGATTTCAGACTATGTTTCTAGCTCAAACTTTGATACCTTAACAAAC CCTGTGAGAACACTTGCAGGAGCTAGGCCTGGTAAAGTGGAACTGAATGTGATTAGTTATGGTAGCAGTGTGAACATCTC AACAGGGGAAGTCAACACCACCATCACTGGGATTATATACACGGATAAGCATCTTGCTATTTATAAGGTGGGTAAGGTGC TTCTTCCTATGGATTTCTTTGCAGTTGCTAAAGCACCAGCAAAGGCTCCATCTTCGGCACCAGAACCTTCAGCAGAAGCC CCTAAAGCTGATAAGGAGAAGCCATCATCAGATGATTCCTCTGATTCATCTCAGATTAGTTCCACAAGCATGAAATCTAG CAGTGTGAAAATCACTACGTGTGGAAAATGGGTGTCCCTAGTTCTTGGAGTAGCTCTCATGACCGTAGTGTCAACATAA
Protein sequence (LotjaGi2g1v0361600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMMKKQSLLFFALLVSLLYSTTTLAQLSPASAPLKPATPVPTTPASSPKPLVPSLPESPSDSTAPDTAAVDIVGILRKA KSFNVLIRLMKTTQLINQLNSQLLTIKTGGLTILAPDDSAFSELKAGFLNSLSDGQKLELLQFHVISDYVSSSNFDTLTN PVRTLAGARPGKVELNVISYGSSVNISTGEVNTTITGIIYTDKHLAIYKVGKVLLPMDFFAVAKAPAKAPSSAPEPSAEA PKADKEKPSSDDSSDSSQISSTSMKSSSVKITTCGKWVSLVLGVALMTVVST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 33 | 33 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| PANTHER | 3 | 291 | 289 | 5.1E-153 | – | |
| PANTHER | 3 | 291 | 289 | 5.1E-153 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 20 | 26 | 7 | - | – | |
| Phobius | 27 | 292 | 266 | - | – | |
| MobiDBLite | 32 | 66 | 35 | - | – | |
| MobiDBLite | 35 | 56 | 22 | - | – | |
| SUPERFAMILY | 69 | 217 | 149 | 6.54E-24 | ||
| ProSiteProfiles | 70 | 214 | 145 | 16.19 | ||
| Gene3D | 70 | 217 | 148 | 1.3E-12 | ||
| Pfam | 82 | 216 | 135 | 1.8E-16 | ||
| SMART | 112 | 217 | 106 | 3.4E-16 | ||
| MobiDBLite | 228 | 266 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0361600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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