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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0361900 |
| Transcript ID | LotjaGi2g1v0361900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT3G45260.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q944L3|IDD9_ARATH Protein indeterminate-domain 9; TrEMBL-Plants: tr|G7JPG1|G7JPG1_MEDTR C2H2 and C2HC zinc finger protein, putative; Found in the gene: LotjaGi2g1v0361900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85930278..85935671) extracted from Lotus japonicus Gifu genome v1.2.
GAATCTAACTGTGACAACAAGTAATAACAGTTTCTAACTAAGTTAATTATTTCTTCCAATATATTGACATGGTAGAGTTA CAATCTAGTAGTACAACACTACAACTTACTTACTTAGTATAAATAGAGAAAGAGAGAAAGATTTACAGAGAGAGAGAGAG AGTGGTCCAGCTGAGTCTATGGCTGATTGACTCCTAGAGAAGCCGTGTAAGATAAGGAGAGAAAGGAAAGAGATCCAGAG AGAAAGAAATTTCACATGCTAATCACTTTCTTCTTTCTTCATTCAAGTATATCATTCCAAATCACATGCAGTAAAACCAA TTTTCATATCTTGTGAGATATAAAAATTCTTTTCAAAAAGAGAGCAATAATCATGAATGGAATGAAAGCTTTTTCATCTA TTCTAGATTTATTTCTACAAGCCCAGATATTCTAGCAGACACAGCTTTTTTGTTTTTTATTTTGTTTTGGTCCTCATCCA CTTGAAACCACACTTTTGGTTTTGGAAAATTTGTCTAGGTAGCTAGTTTAGGACACACAATTTTTCCTCTGCTCAGAAAT GATGTCTCAAGAAGCCTTTTCTATTCCCTCCAACAACACCATGAGATCAGACACCTTGGCAAATCATGTTCAAGACCCAA ACCCTAATAATCCAAACAACCCTAATCCAAACCCAGCAAAGAGAAAGAGAAATCTACCAGGCAATCCAGGCATGTCATCA TGGTCATCAATTCAATTCTCATTATTGTTTTTTTATATTCTCTTCAATCTATCATCACTTACAAAATTCATCTGTTTGGA TTTCTGTTAAACTCAACACCGATCAGATCCGGATGCAGAAGTGATAGCTTTGTCTCCGAAGTCTCTGATGGCGACTAACC GCTTCCTCTGCGAAATCTGTAACAAGGGGTTCCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGACACAACCTGCCT TGGAAGCTGAAGCAAAGGGCCAACAAAGATCAAGTGAGGAAGAAGGTTTACGTGTGCCCAGAGAAGAGTTGTGTCCACCA CGACCCTAGTAGAGCACTTGGAGACTTGACAGGAATCAAGAAACACTTCAGCAGAAAACATGGTGAGAAGAAGTGGAAGT GTGAGAAGTGCTCCAAGAAATACGCTGTTCATTCCGATTGGAAGGCCCATGCCAAGATTTGTGGGACTAGAGAGTACAAG TGTGACTGTGGCACACTTTTCTCCAGGTGGGACTCTATACAACTTACAGTATACTATCTCACATCTCACTAAACAACTTT TCTTTTATCGAATCAATCAAACTTTAGAAGCTTTGTCCTATATAATTTGATTCTACCTTCAAAATCTAGAAAGTTTCCCA ACATCAGTGCATCAACTTCTTTTACATCAGAATCAATGAAATTCAGAAGCTTTGTTCTAAATAATTGATTCTACATTCAG AATCTAAAAACTTTCCAAACATGTACTTAAACATAAATATATACCCATTAATGACTCATCATCTTATAATTTGTAGCTTG AGTTCATACATGTAAAAAGGGAAAGAAAAAAAATCTCCATGATGATACCAATTAGTTTAATTAATGCATCCAACAAATGT GAAATATCCTTAATTTGTTGACTTTAGAGGATGCTGGATATTAAAGGAAATTCACAAATGTGTGATACATGCAATGAGTA ACTGAGAGAATATTTGTTTGGAACATTAATAAATGCATTGATGTTTATAATTTTTTCAGGAAGGACAGCTTCATAACTCA TAGAGCTTTTTGTGACACTTTGGCTGAAGAAAGTGGGAGGATAACTAGTACTATTCCAGCAGCTTTAACCAACTTCAGAA CCAATCATTTTACAAATGCTCAACCTCTTAAGATTCCTCAGATTTTTCCTGGGTTTCACTCAGAATTTGGTGGCTCAGGG TCAGAACCATTGAGGCTTCCACCATGGCTAGACCAACAGGTCAATAATTCCCAGCTTCACAATCATCCACTTAACTTCAC AACCAAACCACCAAGTGCTGCAAATTTCTCATCATCTGATGCAGTGGACATGTTTGGATCACAACAACAAGAGACACAGT GGCTGAATTTCAGATTCCCAGCTGAAACGTCATTTCCTGGTAATTCCAATAACAACAACAATAATAATCTATTGTTGTTG CCACATGGACTTAAGCAAGAAGAACAAGAAGAAAACAAAGGAGATCACTTGTCGCATTCGCATAGTGTGCAGGTAAGCTC TTTGTACTTGAGTAATCATCAGAATCAGCTGCAACAACAAACTCACATGGGATCTATGACGGCGAGGATCAACGACGACG ACCACACAGTAGTACCCTCCTTCAACAACATTGTTGAGGTTCAGAAATTGTTCAAGCAAGCTGATGAGAATAGTAACCTG AACAGGTTAGTGAGTTTGGAAACCAGCGGCAACAACAACAACAACAACGACCTCGGAGGTGGTGGTGGGTATTTATTAAA TGATCATCCACTATCAATGATGGGCAATGAGCAAGAACTACATTCAAGCTCAGATAACAAAAACCAGCTGAGAGACTTTC TGGGTGTTGGAGTTAACTCAATAAGCAGGCCCTTCTTGCTGCAACAAGACTTTGCTGAATTCAATGCAATGGAAACCGCA ACAAACCAGAGCCAGTACAATGGACACTACTGCTAGAGTTATATAGCTTAGAGAGAGCTAAATAAGAGTGGCTAAGTCAA GTATATCATAATGGTATGTAGCTACTTTTATATTGATAGACTTATTTTCAATCAGAATCAATTTTGTCAACCAGGAACTT CTATTCTCATTAGAATTGAGTTTAGCTTTTAAAATCTATGGTAGAAGAATTTTCAAATTACATTAGATACCAATGAGCAG TGGCGGACCTACCACAATGCCCTGGCTCAAAGTAAAACAAATACAAATTTTTTTGGACTAAGTAGGTTTTTTGGCCAAAA AAAAAAATTAGAGAAAAGGTAAATTTATAAGGAAATGTAAAGTTTAGGGACTTAATCATAAAATTTGCCTAGGCTTCATA AAATTTCTAATTCCGCCATTGCCAATGAGCTAAAGAAAAGTAGCTAAGTCAAGTGTGTCATAATACGCTACTTTTATACT CCCTCCGTTCCTATATAACTGATACTTTAAGGTTGTGGCGCAAATATTAAGAACTAACAATTAATATTCTTGTTTTACTA AAATTACTATCTAACTTCCTATTATACCCTTTATCTCTCTTATCAATTCTAACTTTTCAATTTTCCTACCAATAATAAAT GAAGGGCACAATTGATAAAGTAGCATTAATGCTCTCTTGAAATTGTAAAAGTATCAGTTAAATAGGAACAAAAAAAAGAA CCAAATTAGTATCAGTTATTTAGGAACAGAGGGAGTATCATGATTGTATATCATAATTGGGTTTAGCAAACTTTTAAAAT CTATCAACGTGCATTTATTACCAATGAGATTGTAGAAATGTAGAAAGGGTTGAGATGTCACTACACTTGGGTCAGTATGT GATGCATATCGAACATGGGAGTTTCTTCTTCACGTGAGTTGGATCGGTATCTTCAAGAGGGGTCTCGTGAAAAAGGTGGG GGCCATTGCATGTTAGAAGGGACAAAAACTAAGAGATGTGATCATGTGAGATGAGTCCAAAACTCTCAAAGGGTGTGATG ATGATTCTCTCCGTTAACTTATGGTAGGTCCCCATACTATATAGGGATAATGTTTCATCCACACCTCTCTTTTGAGGTGG AGAGGTTGAATAGTGAGAGAGATAGGAAGAAAAGAAAAAGTAAGAGAGAGAAAATATGAGATGTGATAGATGATAAGATG AGAGAAATAGAAATAAAAAGAGATAGAAATGAAGTGTTTAAAAAATGGGGTGTATATATATCATTACTCAACTACCCTTT CCCTAGTTACTTCCTTCATGATTCTCTCCGTTACTTCCTTCATGCATGTCGTAGAAAGATAGCATTACCATTATATATAA TTGAGTCATTATATGTCCTATTAATCTCACGTTATTTTTCATTTTATTTTCACTTCCTATTTGTTTTAGTTCCTATCACA TTACAGCCATTACTTATGATATGTCTATTATTTTCTTTCATTTTTTCCGTCTCTATTAGATATCGGTGGACTGTGGATGA GTGTAAACATAACATTTTCTATATAGTTAGTTTTTCTTTAAGCTAACCTATTTAATTTCTTATACAATTGTGTTAATACT TTTATTCACTTACATCAGGAGAGGAATAAAGACGAATAGTTATACCTTCACACCTCATTTTTAAGGTGTGGAGAGGTGGA ATAAGAAAGAGATATGAAGAAATGAGAGAGAAAATAAAGATGTGAAATTTGATTATTTTGATAAAGGAGAGAGAAATAAA TAGAAAATGAAGGTGGAAAAGATATGGATGTGTGTATATATCACATGTGATATAGAAAAAAAAAAATTTGAGTGCGAGTG AATCAAGTATTTTTTTTCTCTAACGTGCATTTTATAGCATCTTACATATTGTGACTTGTAATTAACTTCCTTTCCTTCTT TCTTTCTGGCCCTTTTCAACAGCGATGGTCGTAAAATGAACACAACCTTGGTCTTGCAAAAACAGGGAGATGGATCAGGA AGAAATAGGGGTTGGCTTGGTGCGCGGCAGCATGGTGTTACTTTCGGTGTTTTGGCATCTGACCATCAGAGATAAATGGC TTGATCCCATTTCTAGAGCTATGGGCATTGGTGGAAGTGACGAATCAAGAAATTTAATATTGTAAGCAATTGTTTCTTCT AGAGATGCTTGTCTTGGGGGCTTATTACAAACCTAACCTTTCCCACCATCTAAAATTCATTTTTAATTTCGTCCATCCTA AAAACCCACCCTTTGTATACCATCATTGATTGAGTCCTGTGTTTCAATGGTGAAGGTTAAAAGAAAATCTTTTTTTTGAG AATGTTACTTCTTCCCATTTTCGAACATTTGAAAATGTGTGAAATCCAAATTAATTTTGAAATGCAATGCATTTGACAAG CGTTTGAGTGTTGAATTATGCACAAGCATAAAAGAAGTTTCTCATAATTTTCCCTATCATTGTGATACCCGACTATAAAC CTTTTGGAGCATCATGATGCTCGATTTCCCCATATTTCTCTTATAGAGCATGACTTGTTGTTAGTTTTTCTCTTTCGGGA CATGATGCCGTAATTAATTCTTCTCTTTCAAGGCATGAAACATCTACGAAAAACGACGTCGTACGACGTTTCACAAGAAA CTAAGATAAACATCACCCCCACTCACCTTGGTCAAATTCAAAGCCAGTTGACTCATAAATCCTCACATGTCCTCAAGGTC ACGTACTCACGTGTTTGTTTAGACTTTAGAGAGA
CDS sequence (LotjaGi2g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTCTCAAGAAGCCTTTTCTATTCCCTCCAACAACACCATGAGATCAGACACCTTGGCAAATCATGTTCAAGACCC AAACCCTAATAATCCAAACAACCCTAATCCAAACCCAGCAAAGAGAAAGAGAAATCTACCAGGCAATCCAGATCCGGATG CAGAAGTGATAGCTTTGTCTCCGAAGTCTCTGATGGCGACTAACCGCTTCCTCTGCGAAATCTGTAACAAGGGGTTCCAG AGAGACCAGAACCTGCAGCTGCATCGGCGAGGACACAACCTGCCTTGGAAGCTGAAGCAAAGGGCCAACAAAGATCAAGT GAGGAAGAAGGTTTACGTGTGCCCAGAGAAGAGTTGTGTCCACCACGACCCTAGTAGAGCACTTGGAGACTTGACAGGAA TCAAGAAACACTTCAGCAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATACGCTGTTCATTCC GATTGGAAGGCCCATGCCAAGATTTGTGGGACTAGAGAGTACAAGTGTGACTGTGGCACACTTTTCTCCAGGAAGGACAG CTTCATAACTCATAGAGCTTTTTGTGACACTTTGGCTGAAGAAAGTGGGAGGATAACTAGTACTATTCCAGCAGCTTTAA CCAACTTCAGAACCAATCATTTTACAAATGCTCAACCTCTTAAGATTCCTCAGATTTTTCCTGGGTTTCACTCAGAATTT GGTGGCTCAGGGTCAGAACCATTGAGGCTTCCACCATGGCTAGACCAACAGGTCAATAATTCCCAGCTTCACAATCATCC ACTTAACTTCACAACCAAACCACCAAGTGCTGCAAATTTCTCATCATCTGATGCAGTGGACATGTTTGGATCACAACAAC AAGAGACACAGTGGCTGAATTTCAGATTCCCAGCTGAAACGTCATTTCCTGGTAATTCCAATAACAACAACAATAATAAT CTATTGTTGTTGCCACATGGACTTAAGCAAGAAGAACAAGAAGAAAACAAAGGAGATCACTTGTCGCATTCGCATAGTGT GCAGGTAAGCTCTTTGTACTTGAGTAATCATCAGAATCAGCTGCAACAACAAACTCACATGGGATCTATGACGGCGAGGA TCAACGACGACGACCACACAGTAGTACCCTCCTTCAACAACATTGTTGAGGTTCAGAAATTGTTCAAGCAAGCTGATGAG AATAGTAACCTGAACAGGTTAGTGAGTTTGGAAACCAGCGGCAACAACAACAACAACAACGACCTCGGAGGTGGTGGTGG GTATTTATTAAATGATCATCCACTATCAATGATGGGCAATGAGCAAGAACTACATTCAAGCTCAGATAACAAAAACCAGC TGAGAGACTTTCTGGGTGTTGGAGTTAACTCAATAAGCAGGCCCTTCTTGCTGCAACAAGACTTTGCTGAATTCAATGCA ATGGAAACCGCAACAAACCAGAGCCAGTACAATGGACACTACTGCTAG
Protein sequence (LotjaGi2g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSQEAFSIPSNNTMRSDTLANHVQDPNPNNPNNPNPNPAKRKRNLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQ RDQNLQLHRRGHNLPWKLKQRANKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHS DWKAHAKICGTREYKCDCGTLFSRKDSFITHRAFCDTLAEESGRITSTIPAALTNFRTNHFTNAQPLKIPQIFPGFHSEF GGSGSEPLRLPPWLDQQVNNSQLHNHPLNFTTKPPSAANFSSSDAVDMFGSQQQETQWLNFRFPAETSFPGNSNNNNNNN LLLLPHGLKQEEQEENKGDHLSHSHSVQVSSLYLSNHQNQLQQQTHMGSMTARINDDDHTVVPSFNNIVEVQKLFKQADE NSNLNRLVSLETSGNNNNNNDLGGGGGYLLNDHPLSMMGNEQELHSSSDNKNQLRDFLGVGVNSISRPFLLQQDFAEFNA METATNQSQYNGHYC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 1 | 54 | 54 | - | – | |
| PANTHER | 4 | 491 | 488 | 4.5E-156 | ||
| PANTHER | 4 | 491 | 488 | 4.5E-156 | – | |
| Gene3D | 66 | 93 | 28 | 3.2E-5 | – | |
| SUPERFAMILY | 69 | 167 | 99 | 6.4E-7 | ||
| SMART | 70 | 92 | 23 | 0.11 | ||
| ProSiteProfiles | 70 | 92 | 23 | 10.824 | ||
| ProSitePatterns | 72 | 92 | 21 | - | ||
| Gene3D | 104 | 195 | 92 | 1.1E-6 | – | |
| SMART | 112 | 142 | 31 | 100.0 | ||
| SMART | 147 | 167 | 21 | 140.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi2g1v0361900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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