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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0365100 |
| Transcript ID | LotjaGi2g1v0365100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT2G28550.1 related to AP2.7; Swiss-Prot: sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7; TrEMBL-Plants: tr|I1LR17|I1LR17_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0365100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86270548..86275519) extracted from Lotus japonicus Gifu genome v1.2.
GTGGACCCACAAAAATATCTATCTACTTTAACAATATCGGTGACCGGCAACCTAACCAACGAGTCTACTCCATGAGAGAT AAAATGTTTATATATTCCTTCCCTCTTAAAACGGTTCACAAAGCAAACGTGTTTCTTCACACTTCTCTCCCGGCAACGGA ATCAAATAGCCACCGACGTTTTCACTTTCCGGCGACGATGAACTCATCGCCGGCGAACTGAGCTCGCCTCTCTCCCCTCT CAGTCTCAACCTGTTTCCGTGAGCTCCATCCTCTTCGTTCCACTTCCGCTCGCCGGAAAAATCCGCCGGCGATCGTTACT CCGATTTTCTCTCCACTCTTCCTTAACTGTTTTCTTACATTACCTGTTTCATCTGATCTTTTTTTATCGGATCCATTTTC GCCGGCGGAATCATCATCGCCGGCGACGTTGAAGCGAAGCTAGTTGTTGATCATAAAATTGGAAAGGAGAAGTTCAAAGA GTTAATTTCAGTTGAAGATAAACTGTCATGTTAGATCTTAATCTCAATGCTTACTCAGCCGATTCGACTCAGAACGGCGA CTCGCCGTCGCAGATGCTGTCGGAGGAGTTTCCAGAAGGTTCGTGGAATCAAATGGCGGAGTCAGGAACTTCGAATTCCT CCGTCGTCAATGCGGACGGGTCCAGCAACGAGGACTCGTGCTCCACGCGCCCCGATGACTCGTTCACCTTCCAATTCGAC ATCCTGAAGGTGGAAGGAGCAACCGACGTCGTGACGAGGGAGCTGTTCCCCGTGAGCGGAGGAGTGGACGGCGGGAACTG GCAGTTGCACGGTGCGGCGTCGTTTCAGCGCTCGGTGGATCTCTCGTTTGATCAAGTCCGAGGGAACAGCGAGATGGTGA AAATGGTCCAGCCTCATCAGCAAGTGAAGAAGAGTAGGAGGGGACCAAAGTCTCGTAGCTCGCAATATAGAGGGGTCACC TTTTACAGAAGAACTGGAAGATGGGAATCCCATATCTGGTTCGTAATTTTTGTGAATGAATTTAGTTTTGGTTTCTATTT TTGTTGATTTTTTTCTTCATTATATGTCAATGCTTGGTTCAATTTCTGATGCTTTTTCTGTTGTTGGATTTTTGTATTAT GTGTAGGGATTGCGGGAAACAAGTCTATTTGGGTAAGGATTGTTAATTCATGAATTTTCAGTTTTTTCTGGTACATAATT TCAGTTATTTGAAATTATATGCTATGATCTTTTCACTCATTAAAAATTTATCCTATGATTTACTATTTTAAGCACCTTTG ACGAAATTGGTATTTGAGATTGTAGGTGGATTTGACACGGCTCATGCTGCTGCTAGGTATATTTTTCTGGACATGTTTTG GTTGACTTTGTCCTTTGTTTTGATTCTTGAGAATTTGATTGTTTTGATCCTCAATTGACTTGAATTTTTTTAAAATTAGA GCGTATGATCGAGCTGCGATTAAGTTCAGGGGAGTTGATGCTGACATTAATTTCAACCTGATTGATTATGAGGATGATCT TAAACAGGTTAGAAAACTCGCAAGCACTTGATTAACTGATAGGAAACTAGATGCTGATTATGGTTTAATTTTTCTCCATT TTGTTACTACTGGTGGGCAGACGGAGAATTTGTCCAAGGAAGAATTCATACACATACTCCGTCGCCAAAGTACTGGTTTC TCGAGGGGGAGTTCAAAATACCGTGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGGCAATTGCTTGG CAAAAAGTGAGGACTTATTTGTATATCGACTGAATTAGTGGTCTACTATGAATATTGTGAATTATTTGAGATATTACGAA TTCGAGTACCTATTGGCCTGCGAAGCGAATTCATTTCAGCTTAGTCTCAATGCTTCTTTATGCTTTGCTTTGTTCGTGTT AGGAGAAACTTGGCTAAGATAGTAAGATGCATGTTTTGAAGAAACTATCGGCGAAGGTGTTATTGTTATTGTTATAGAGA TTGCAATGCTTTCATGCAGGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGTCCTAATGATACATG ACTTACATTCTACCTGTAATGAATTTATTATCATGAGTTATCAAGCTCATTTGGATTCCATCCAACATGTATCTCCCTTA TGATTTTCTGGGAATCAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGGCAA GTACATACGAACAAGGGAGGAAATCTGCAGCCATAAATGAATGTAATAATTCATAATAATCATCCGAATTTTTTTAATCT TTCTATTGATTTTGAGGATTGAAGGATGTTCTCTCTATAAAAAATGGTTGTATGTTTTTTCAATACAGTTGGCAGTCAAA ATCTTGACCTTAAATTGGGCATAGCAACCCCAGGACCTGCTCCAAAGGAAAATCGGGAGCAACTTCAGTTTTCCTCCATC CCTTACAACATGCATGCTGGAAGAAGTTCAAGGGTATATAGCTGAACTTCATATTTTCATTTATATTAGGTTTCTTCTAA GGCGAGTTAGTTTAATAACACTTTTCATATCATGATAACTATTGAGCATATACTTATCTGGAAGCAGAGCTCCCGTAATC TTTGTGAGTTCAAGTATGGCTAATTACAACCGGTTTTCCTATGACGTCCTTGACATTTGTAAAAAAGTTTTGGTTTTGTT TTATTAAGTCTTCAAGATCTACTAAGATGTAATAGGCTGGATTCTCTTTATGAGCAGGTCGTAACTGAAGAGCGTCCTTC TGTATGGAATGGCATATGTCCTAGTTTCTTCCCCAATGAGGTGATTTCACCATCTAGTGTTAGTTTTCAGCTAGAGTTGA TTTGTTTGCTTGTTTCTTTTTTTGAGCACTTCATTAAAAACCTTTACTACAATGATTTCCCTGCTAGTGTGCCATCATTA GAACACTGAAGAATGCTTGACATTAGAATGCCATACATAACAGTGAAAGTTAATTTTATGTTTAGGGATTTACTAATGAA TTTTTATCAATGAGCTTTTGGAACAATGTTTGTTTGCGCATTGAAAGAAATATATGATGACATGTTTTCTTGTATGAGAT AATCATTGTAAGACAGTAAAAGATTGTTAAACTATTTAGCAGGAAGGAGCAGAGGGTATTAGCATAGATCCTTCAAAAGG ACTCCCCAATTGGGCGTGGCAAACGCATGGTCAGGTGAATACTGCCCCAGTCCCACCATTCTCGGCCGCAGCATCATCAG GATTCTCAATTTCAGCTACCTTTCCATCAACCACCATCTTTCAAACAAGATCCACAAACTCAATTCTGCCGAGTCCATGT TTTACTCCACCTCAATATTATTACCATGGTTAAGTCCCCGCAGGCTCCACCCTAGCTTTCCTGGTAACACAGATGAAACT TGAAACACAAACCATAGGAATGAAGAGTGTGTGTGTGTGTGTGTTCAAAATTCTTTGTATGATTCAGGGACTGATTGGTG TATACTGAGGCTCGACACTTGATTGATACCTCTTGTTAAAACCCTTATGGCACATATTACATTGAAGGAAATGCCATTTT TTAGTGCACTGGTACTACAATGGTGCTGTCATTCTCAAATTAGCTGTTAGCAGTTGAAATTCATTGTATTTTCTCACCAG TCTTGAGACCATGGGCCCTGATTGTGCTTCCTATAAATGGGAGGAATGGAAGAGTTTTTTACATTTTTCGTTCTAGTACT AGCTGGTTTGAGTAATTTGACTACCTATACTTCCTTGCGATTTATAAAGCAGTGCTCAATATTTTCCCATACTATTTGGG AAAGTGAACAAATTAGATTAAGAAGATTGGATAGGTTTACTTCTCTTGCTGCCTTGTCTAAAATGACAGTTAAATCAGTT TCATTTGGCGACTAGAGCAGAACAATGTTACTGTTTATATTAGTGAAGAGGGTTTAAAAAGGGAAAAGGGTTAAAAAAGC TAGAACATTACTGTTTTGTTACTCTTTTGTTTATATTAGTGTTCCATTCATCATGCCCCATGTTTGGATAGGAAATTAAT TCTTACCCCGTGATGACTAATGTGCGACACTGTAATTTTGTTGTAATGATTATTCTCTTCCAATGCCAATGCCAATGCCA AATTGCCAATGGGTGGCCCTAGTCACAATACAGTACTTGTCTTAATACTAAATTGGTAGCAGAGCAGCTTCCTTTGATAC TTAATAGCAATCCGATGAATGAATGGAGCCATACCAAACCTGATGATATTGGATGTTACTATCCACATGCCATCTTATGT TATATATTGTACCGATGTACCCCACCACTAACCGAATGGATTCATCATGTTTGAGTTTTCAGACTCCTCACTTCACTTTT CATTTCTATCATCTCACACATCTTACTTTCACTCATCTTTTTTTCATATCTCTTATTTTCCACACCTTATTCACACTTCA AAGTGAGTGTTAACACATGTGAATGAATTTTTTTTATAAAAAAATGTAGCGTGAGAAGAACTGATGAAATGTGAACAATG GTGAATCAACAACAAAGAGTCTGTCTTTTGGGGTCCGCAAGGGTACAGGTGTTTGAGGAGAGGGGAACGAATGTTAGGTC TCGACCCCGCGAACTTGAGGTATGCCACGAGTGGCAGATTCATTGGGCAACTTGTCAGAGTAGTTACTCCATTATTCATG TGTTTATGTTATTGGGGACCAGACCTTAAAATGTCTATCCTCCTCCGAGTAACTCCAAAACAAGCACTAGTGATAGTGAA GATTTTTTTTGGAAATTAGTGATAGTAAAGTCTTTCTGAACAATTTTCATGAATAAACTTAGATATCATGCTAGAATTTC GGCGGTTCTAGGGAGAGGTGCTTCAATGAATCAAGATCTTTGTATTTAATCATGGTTAGTTTAAGTGGTGTGTTTAATTT TTATTAAGCAAA
CDS sequence (LotjaGi2g1v0365100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGATCTTAATCTCAATGCTTACTCAGCCGATTCGACTCAGAACGGCGACTCGCCGTCGCAGATGCTGTCGGAGGA GTTTCCAGAAGGTTCGTGGAATCAAATGGCGGAGTCAGGAACTTCGAATTCCTCCGTCGTCAATGCGGACGGGTCCAGCA ACGAGGACTCGTGCTCCACGCGCCCCGATGACTCGTTCACCTTCCAATTCGACATCCTGAAGGTGGAAGGAGCAACCGAC GTCGTGACGAGGGAGCTGTTCCCCGTGAGCGGAGGAGTGGACGGCGGGAACTGGCAGTTGCACGGTGCGGCGTCGTTTCA GCGCTCGGTGGATCTCTCGTTTGATCAAGTCCGAGGGAACAGCGAGATGGTGAAAATGGTCCAGCCTCATCAGCAAGTGA AGAAGAGTAGGAGGGGACCAAAGTCTCGTAGCTCGCAATATAGAGGGGTCACCTTTTACAGAAGAACTGGAAGATGGGAA TCCCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCGTATGATCG AGCTGCGATTAAGTTCAGGGGAGTTGATGCTGACATTAATTTCAACCTGATTGATTATGAGGATGATCTTAAACAGACGG AGAATTTGTCCAAGGAAGAATTCATACACATACTCCGTCGCCAAAGTACTGGTTTCTCGAGGGGGAGTTCAAAATACCGT GGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGGCAATTGCTTGGCAAAAAGGCTTATGACAAGGCAGC TATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGGCAAGTACATACGAACAAGGGAGGAAATCTGCAGCCATAA ATGAATTTGGCAGTCAAAATCTTGACCTTAAATTGGGCATAGCAACCCCAGGACCTGCTCCAAAGGAAAATCGGGAGCAA CTTCAGTTTTCCTCCATCCCTTACAACATGCATGCTGGAAGAAGTTCAAGGGTCGTAACTGAAGAGCGTCCTTCTGTATG GAATGGCATATGTCCTAGTTTCTTCCCCAATGAGGAAGGAGCAGAGGGTATTAGCATAGATCCTTCAAAAGGACTCCCCA ATTGGGCGTGGCAAACGCATGGTCAGGTGAATACTGCCCCAGTCCCACCATTCTCGGCCGCAGCATCATCAGGATTCTCA ATTTCAGCTACCTTTCCATCAACCACCATCTTTCAAACAAGATCCACAAACTCAATTCTGCCGAGTCCATGTTTTACTCC ACCTCAATATTATTACCATGGTTAA
Protein sequence (LotjaGi2g1v0365100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDLNLNAYSADSTQNGDSPSQMLSEEFPEGSWNQMAESGTSNSSVVNADGSSNEDSCSTRPDDSFTFQFDILKVEGATD VVTRELFPVSGGVDGGNWQLHGAASFQRSVDLSFDQVRGNSEMVKMVQPHQQVKKSRRGPKSRSSQYRGVTFYRRTGRWE SHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLIDYEDDLKQTENLSKEEFIHILRRQSTGFSRGSSKYR GVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEASTYEQGRKSAAINEFGSQNLDLKLGIATPGPAPKENREQ LQFSSIPYNMHAGRSSRVVTEERPSVWNGICPSFFPNEEGAEGISIDPSKGLPNWAWQTHGQVNTAPVPPFSAAASSGFS ISATFPSTTIFQTRSTNSILPSPCFTPPQYYYHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 61 | 61 | - | – | |
| PANTHER | 2 | 432 | 431 | 3.7E-186 | – | |
| PANTHER | 2 | 432 | 431 | 3.7E-186 | – | |
| MobiDBLite | 7 | 61 | 55 | - | – | |
| SUPERFAMILY | 145 | 202 | 58 | 9.15E-16 | ||
| Gene3D | 145 | 204 | 60 | 3.0E-19 | ||
| CDD | 145 | 201 | 57 | 3.86666E-12 | ||
| Pfam | 145 | 194 | 50 | 6.3E-9 | ||
| SMART | 146 | 208 | 63 | 1.2E-31 | ||
| ProSiteProfiles | 146 | 202 | 57 | 17.794 | ||
| CDD | 237 | 282 | 46 | 2.76337E-14 | ||
| SUPERFAMILY | 237 | 281 | 45 | 1.9E-6 | ||
| SMART | 238 | 286 | 49 | 1.8E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0365100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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