Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0370000 |
| Transcript ID | LotjaGi2g1v0370000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT2G28710.1 C2H2-type zinc finger family protein; Swiss-Prot: sp|Q9LX85|ZAT8_ARATH Zinc finger protein ZAT8; TrEMBL-Plants: tr|I3T8W4|I3T8W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0370000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86716331..86717470) extracted from Lotus japonicus Gifu genome v1.2.
GTTCATTGCATCACTTGATCTTCCAATTAGTTCCTACTAGAAAACTTAGATATGAAGAGAATGAGAGACATGGAGGGTGA CATGGCTAATTGTTTGATGTTACTATCCAAAGTTGGTGAGAGCTGCAACAATGGTGATGGTTTCGTGTGCAAGACGTGTA ACAGGGAGTTCCTTTCGTTTCAAGCCCTCGGAGGACACAGAGCGAGCCACAAAAGGCTAAAGCTCATGGCTGCAGGCCTT TCTTCTTTCTCCTCGCGCCCGTTACAAGGCTTGAGGGAGAAGAAACAAAAGATGCACTCATGTCCCATTTGCGGGATTGA GTTTGCAATTGGTCAAGCACTTGGAGGGCACATGAGAAAGCACAGAGCTGCTATGAATGATGGTGGTGCTAAAAGGTCTG ATCATTTGTGCTTGGACTTGAACTTGACACCCTATGAGAATGATCTCAACCTTATCTTGAGGACACCACCTTTATCAAAA AAAATCTAGTTATATATAGTGGGGATTAAGAGACTAAATGAAATATGTCTGTTTTACACATAGGTTTATAAAACACTTAC CTAAGTTTCTGTTTTCAATAGGAAAGAAAAGGAAATTATCTAATACTTAATTTGTTCGTTAAATTTCAATTCACCTTTGG CCACTATCAAATGTATGAGGAAAGACTCTGTTGGGGATTCAATAGCATAAGAGTAAGAGGTTATTCTATGACTATTCACG TAATTATGACTGCGGCTAATTGAGACAAAGAGAAAAGTGACGTAAATATAATTTGCTTTTTGCAAGAACCTCTACTTCAC GCCAGTGGCCGTAAAAAAGGAAAGGAAGCATGTTGACCTGCTATCTAAGCCCATATCCACATCCTACCCTCGATACTTGC ACATTTTTTGAAAGAAAGCAGCTAGCTGTGCTAGCATGTTAAGTAAATGGTAGCAGAGTCTTGGAGGAATAAAGCGATGT TCTGTCTTCCGTTTCCTACTATTTTTCCCTTAAGTAGTTCTGTCTTGTCCTTATAGTGGTTATGAGACTTGTATCTAAAG CAAAAGGGATTGGGGCAGGTTTATCATTTTAATATGCTTAAGAATACCATGTTGCAAAAAATGAGGCACTTGATTCTCAT CAATGTTTGTGTTACTCAAG
CDS sequence (LotjaGi2g1v0370000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAATGAGAGACATGGAGGGTGACATGGCTAATTGTTTGATGTTACTATCCAAAGTTGGTGAGAGCTGCAACAA TGGTGATGGTTTCGTGTGCAAGACGTGTAACAGGGAGTTCCTTTCGTTTCAAGCCCTCGGAGGACACAGAGCGAGCCACA AAAGGCTAAAGCTCATGGCTGCAGGCCTTTCTTCTTTCTCCTCGCGCCCGTTACAAGGCTTGAGGGAGAAGAAACAAAAG ATGCACTCATGTCCCATTTGCGGGATTGAGTTTGCAATTGGTCAAGCACTTGGAGGGCACATGAGAAAGCACAGAGCTGC TATGAATGATGGTGGTGCTAAAAGGTCTGATCATTTGTGCTTGGACTTGAACTTGACACCCTATGAGAATGATCTCAACC TTATCTTGAGGACACCACCTTTATCAAAAAAAATCTAG
Protein sequence (LotjaGi2g1v0370000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRMRDMEGDMANCLMLLSKVGESCNNGDGFVCKTCNREFLSFQALGGHRASHKRLKLMAAGLSSFSSRPLQGLREKKQK MHSCPICGIEFAIGQALGGHMRKHRAAMNDGGAKRSDHLCLDLNLTPYENDLNLILRTPPLSKKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 133 | 126 | 8.5E-43 | – | |
| PANTHER | 8 | 133 | 126 | 8.5E-43 | – | |
| Gene3D | 26 | 116 | 91 | 4.1E-9 | – | |
| ProSiteProfiles | 31 | 58 | 28 | 9.245 | ||
| SMART | 31 | 53 | 23 | 1.3 | ||
| SUPERFAMILY | 31 | 104 | 74 | 3.05E-8 | ||
| Pfam | 31 | 55 | 25 | 1.0E-9 | – | |
| ProSitePatterns | 33 | 53 | 21 | - | ||
| SMART | 82 | 104 | 23 | 0.2 | ||
| Pfam | 82 | 106 | 25 | 2.5E-7 | – | |
| ProSiteProfiles | 82 | 109 | 28 | 8.704 | ||
| ProSitePatterns | 84 | 104 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0370000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…