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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0370700 |
| Transcript ID | LotjaGi2g1v0370700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8L773|THO4A_ARATH THO complex subunit 4A; TrEMBL-Plants: tr|A0A151TMF4|A0A151TMF4_CAJCA RNA and export factor-binding protein 2; Found in the gene: LotjaGi2g1v0370700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86756886..86761922) extracted from Lotus japonicus Gifu genome v1.2.
TTCTATCTTTATCTCTCTCCACCACTCTCAACTCTCACAACACTCGACGAAACCCTAAACTCGTTGCAACTTCACTCACT CTCAGTTCAGATCTTCGTCTCTCTCTGTCTCTGCTTCACCTCACTGTTCATTGCTTCTGATAAAATCACCACACGCAACC ATGTCTGCAGGTCTCGATATGACCCTCGACGACCTCATCAAAACCAACAAAAAATCCGGATCCGGAAACTTCAGGGGCCG CTCCGGACCCGGACCCGCTCGCCGCATCCCCAACCGCTCCGGCAACCGCACCGCGCCATACGCCGCCACCGCTAAGGCAC TTTCCTTGCTTCCATCTGTTGCTAATTTTATTTATTTAGAATTTCGATGAGATTCGGTTTTCGATTTCAAAACCTAATTT CCGTCGGATTCAACCGCTCATCGGATTTAGGCGCCGGAGACCGCGTGGCAGCACGATTTGTATGGAGATCAGGCTTTGCC GCCGTACCCTGTGGCTCACGATGCTCGTGCACCGCCTTCCTTAGAAACTGGGACCAAGCTCCTCATATCTAATTTGGATT ATGGTGTTTCCAATGATGATATTAAGGTACTATTACCATCTCTTCTTTTCGTTTAGTTCAATGCTTGTGTTGTCTTTATT TTGCATAACCTAGAGCTTTGATTGTTAGTTTTTTCACGAGCTGTGATAATTGGTAACTATTGTGTGGGGTTTGTTAGGAA TTTTGGTTTTGATTGTATGTTGTTGTTACTGGTGTTTCTTGAGAGGCCCTTTTGTCAAATGGAAAAGGTTTTTGCATAAA TTATGTGATGTGAGCCATGCTCACGTTGGCATCATCGTGTTATCCATTGTTTTGGATGAGAGGATGTGAGGAGGTTGTAG TGTCAACATGTCCACGGATCTTCGATACTTAGCATAGTTGGTGTTTAGCTGCTGCAGTTGTATGTTTGTTTTTAAATCAA GCTGTTTTCACTTTAGGCTTCTTATGATTTTTTTCCTTCCGATGCCTTCTCTTAGGCTTCATAGACTGTAGTTGATCCAT TAGTATGCAGGTTTATCTTATAAGTTATAACATTGTTTTTGCATGTGATATCTGATTCCAAATTGCCTTTATTTTGTTAC TCTATGATAAAGAGAAGTACGGGGTTAATTTTGTACTTAGGGTTGTCACTGCATGCTTCTATCTAGGATTGGGGTCAGTA TGAAGTGAATTCAATTTTAAATAGTTGGTGATTATATTATTTTAAATCCATTGTACAATTAAAAGTTCTCATCTGTGGAT TGTATAAAGAAGAACATATATAAGTGTCTGTTTCAAGGTAGTTGAAGGCAAAATGTGCTCGTAGGGAATTGGGGGGTTTT AGTGCTTTGAGGCGTGAGGTAAAGGTTGTTGGTAAAGAAAGTCATAAACATTTATAAATGAAAAGAGGTCAAGTATTTGA CTACTTTGCATTGTTTTTCATTTTTCACACAACTTAAGTACTTAACTACTCAACCATATGATTTATTCATCCTAAAAATA AGAGGTTGAATGTTACATTTACAAAAGCACAAGATGTTTGTTGCTAATAGTAAAAATACTCATTTTGTTATTCTTTTAAC TTCCTAAAAAGTTTACCCCCTTTACACCATAGTTAGCAATTTATATGGCTGGGATTTTTCAATGCTAATAGGGTTCTGTT GCCACCTAAAAGTGCCGATCCCTTGTAGCACCTAGCCTGATTTCCTTTGGCATGTGATTGACTACAATGGTCTGTCTTTC TTCTATCCAGAAACCTAATATGCCTATTTTACTATATTATTGAAAAAGGCAAATATGAGATTATGCATTAGACTTGATAG TTATACAGTCAAATGTTTGAGACAATTTTCATGCTATGCAGGAATTGTTTGGTGAAGTTGGTGACTTGAAACGACATGGC GTTGATTATGACAGGAGTGGCAGATCAAAGGTTGGTCCAGTTAGTATAATTGTCCTTCTAATAATTTTCTCTCTCATGCT GCTATTTATAAAAAAAATGTTCTTTCATAGGGTTCTGCAGTAGTAGTCTTCTCACGACGAGCTGATGCTATAGCTGCTGT GAAGAGGTACAACAATGTTCAACTAGATGGGAAACCAATGAAAGTAGAGATTGTGGGAGCAAACATTTCTTCACCTAGTG TGCCCCCTGCTTTAAGTGGAGCTTTTGGGAACAGGATTGGAGTTCCTCAAAGGTATGAGATTGTGCTCTAATGATCTTCT CTTATTTAGTCTGACTTTTTGAGGCGTGAACCTTTTTCACAGTCTATGTTCTTCTTGGATTGGCTATTTTTGGTTTTTTG AATGCTGATTTGGGTTTAACATATTGCTTTGTGATTTTTTTTTTATATATTGCTGCAAAACTTGATTGAGTCTTGCTTTA TGATGATTGTAATCAATAGATAAATGTTATTGTGGTCTCTTGAACTAGCGACTTTCAATCTTTGGATTGTCTGAAAGCTT TTGTCTATTTTGAATTTACTAAGTTGAATTATTGATGCTTGACATATTCAAAGTCTCCTAACTATTCTGACGTCGTAGAT GCCCTGTCAAAAGCCTGATGTTCATATCATCTTTGTCATCTTGTTTTGTAAAAGTTATGCTTGATCAGTGAGTTGCTGCA GTTGAATGCTAGTTGCTAGTTAATTCCAAGTACTCTGCGTATACGTATGTAAGGAGGGCAACTTGAGGCTATGTACAATT TATACAGGCGGAGTTGTGGGGGATTTACATGGCTTATTAGTTATTACTAGCCAAGAACCTTGGCCTGCAACGAATTGTTG TTGAATCTGTTTTAAAGCAGCCACCAAATTTTAGACACTGACTGCCCATTTATATGCTCATGTGCACACATTTGTGTGTA ACAAATGAGCTCATTTATGAAGCATGGGTACTCTGAAAATAGAGATGTACCCTTACCAGGTACGTACCCAAATGAATATT CAAACAAAAAAAATGGGTACTTCAAGGGTACGTATTGGGTACTCAGTGGGAACTCTTTTTTGGATACTTCTATATCAAAA CTACCAAGTTTTAGTATGTTAAAAATCTAATTTGTTACACTGGAGCAGACACCTCTGCACACTGCTTCAGCCTCCCCCCG TAAGGTCTTAGCTCTGTCAATCATTATCACCGTCCGCCAACCTTCGTTGTTTGCACACATGATCATTGACCACCGTGGTG TGATGGAGGCCTCTGCTCTTCCACTGCCGTGCTGATGGATTAGCAAAGCATGGGCGTTCTTGTTATCCTACAATTTATTA TTTTTAAACCTCCCTGCCTTTATTTCTTACCTTTTTTTTTTCCAGATTTATAGCACACTCAGATTTGATAGAGTGGCTCC TTTTTAGTTTTATCTGCTTTCTTTCTTCCATACACCCAAAACAAAAGATGCCGTGTTTCTTTGTTTGGTATACATGCTCT TCTAGGTATTATCTTATTTTCATTTTGGGTCTTCTTGATACTTTACTTTGAATATTTTGACTTCTATAATGAGATGAGAT GGCTTTTATATTAATCATGAAATAATTATGTGATTGTAATTGTTGTCTTTTTCTTATGGGAAATGACTTCCATTTATCTG GTTTGAGCAGTAGACAAGGAAGAGGAGGGGCATTACGAAGGCCAGGAGGTAGAGGGCAAGGCATTCGAGGGAATCGGGGA CGTGGAAGAGGCCGCGGTGGAGGTCGTGATGAAAAGGTTTCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGC AGAGTCAATGCAATTGAACTAAAGAAATTATCCATGTTTCCATTATTTTCATGCTTTTACATCTATGGGTATTATGGCAT GATGGTGGACCACCATGTGTTTATGTATCTGTCGCAGCCCTCCGTTTTGGGGAGAGGAAGGGATTACTTCGTGAGTGAAA ACTGTTATTGATGTGTGGGATATGGGCTTCTGTTTAATATTCGTTTTCCCTGGGTATGAACTATAGATTATGAAACAGAA ATTCGCTTGTAATATGCACTCAAACTTGCTTTCATTTGCTTTAATTGTTTGTTTTATCAACAAGTGGATAAAGGAAGTGG GAACCATGATCTGTATATCACTATGCAAAGAAATGTCTGGCTGCACAATGTGGGAGGCCTCGGATTTCACCCACAGCTGC TTTTTTCAATTAAGCCTGTACAGTGGAAACTTCAGATGAAGGTAGATTCCCAGCCTCTTCTCCCCCTCGTCTCACCCCAA AAGATAATGTATGTGAAATTGTTATTATTAATCTGACATTTCCCTTTGCTATGATTTTCTTGTTTAATGTAATCTAGAAT AAGCTGTTTTCTTAGAGATGTTCGTTCTTGTTATGGATAAGCACCATATCTCCTGACTCTGGCAATTTTGGCTTATTTAT CTAGTGAGATGGAATCTATCATCTGTTCTACTTGACTTCATCGGTTGAGTGCAATGGTCAAGATAAGATATAGGTCTACA GATGAAGATAGAATTCCTGGCTAGAGATGCTCTAGGAGTTGGTATTTATGTTACACTCACCTGTCATGCTCATTTAGGTT CAGGTGTCTGTGTTGGGAATTCAATTTGGTTGCTGGTTTCAGAACTGTCATTGGGGTTGAAGTTACACGTTGGTATTTTT TTACAGGCTATATAATTTACTGATTTTAACTGAGAGGAACATTGTAATGTTTCTGATAGAAATGCGTGCTTTACTTATGA TGGTCAAAGCGGCTTTTGAAGTTTTTTTTTGAAAGAGGCTTTTGAAGTTAACAGGCGTTGGTGAACATTGTTGTAGTTAT GCTAGGTGTTGGAAAGGGTATATTTACTTCAGTTAGGCCTAGTGAAATGTTTGTCCTTTATTATGAGGTTTCTTTTAACT CCATTTGGTAGCAGTCTGTTGTTCTGTTTGTGTGGATTGTGAAGTTGAGAAATTATCTCGACTCAATTATCTCATCACGG AGAAAAATTGAGTGTTGTTGTTTAGAATCTTGTATAGTGATCTCAATGAACTATCTCGACTATAGTCTGCTACTTGG
CDS sequence (LotjaGi2g1v0370700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCAGGTCTCGATATGACCCTCGACGACCTCATCAAAACCAACAAAAAATCCGGATCCGGAAACTTCAGGGGCCG CTCCGGACCCGGACCCGCTCGCCGCATCCCCAACCGCTCCGGCAACCGCACCGCGCCATACGCCGCCACCGCTAAGGCGC CGGAGACCGCGTGGCAGCACGATTTGTATGGAGATCAGGCTTTGCCGCCGTACCCTGTGGCTCACGATGCTCGTGCACCG CCTTCCTTAGAAACTGGGACCAAGCTCCTCATATCTAATTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTT TGGTGAAGTTGGTGACTTGAAACGACATGGCGTTGATTATGACAGGAGTGGCAGATCAAAGGGTTCTGCAGTAGTAGTCT TCTCACGACGAGCTGATGCTATAGCTGCTGTGAAGAGGTACAACAATGTTCAACTAGATGGGAAACCAATGAAAGTAGAG ATTGTGGGAGCAAACATTTCTTCACCTAGTGTGCCCCCTGCTTTAAGTGGAGCTTTTGGGAACAGGATTGGAGTTCCTCA AAGTAGACAAGGAAGAGGAGGGGCATTACGAAGGCCAGGAGGTAGAGGGCAAGGCATTCGAGGGAATCGGGGACGTGGAA GAGGCCGCGGTGGAGGTCGTGATGAAAAGGTTTCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGTCA ATGCAATTGAACTAA
Protein sequence (LotjaGi2g1v0370700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARRIPNRSGNRTAPYAATAKAPETAWQHDLYGDQALPPYPVAHDARAP PSLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVE IVGANISSPSVPPALSGAFGNRIGVPQSRQGRGGALRRPGGRGQGIRGNRGRGRGRGGGRDEKVSAEDLDADLEKYHAES MQLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 4 | 244 | 241 | 1.4E-83 | – | |
| PANTHER | 4 | 244 | 241 | 1.4E-83 | – | |
| SUPERFAMILY | 68 | 193 | 126 | 2.15E-23 | ||
| Gene3D | 78 | 167 | 90 | 3.8E-20 | ||
| CDD | 87 | 161 | 75 | 1.82182E-44 | – | |
| ProSiteProfiles | 87 | 164 | 78 | 15.426 | ||
| SMART | 88 | 160 | 73 | 1.0E-16 | ||
| Pfam | 89 | 157 | 69 | 2.5E-13 | ||
| SMART | 175 | 244 | 70 | 2.1E-11 | ||
| MobiDBLite | 182 | 244 | 63 | - | – | |
| Pfam | 187 | 240 | 54 | 7.1E-8 | ||
| MobiDBLite | 214 | 237 | 24 | - | – | |
| Coils | 226 | 244 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0370700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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