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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0372100 |
| Transcript ID | LotjaGi2g1v0372100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT5G59350.1 transmembrane protein; Swiss-Prot: sp|Q87JG6|CH602_VIBPA 60 kDa chaperonin 2; TrEMBL-Plants: tr|I3T1E0|I3T1E0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0372100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86898472..86901587) extracted from Lotus japonicus Gifu genome v1.2.
GGATCTTCCCAATAAAAGAATGTGATAATTGAAAGAGATTCTTAATTTATCATCAAACAATTAAAAAGGGAATCAAAGTG TGATCCTTTCCCTCACACAATCACTCATTTTAACTTGATGTTCTTTTGGTTTTATTCCACCATGTTATGCCCATCTTCAT GAGTAACGGTGGTGTTGGGTGTCAACTTTCATGGCAGTGTCCTATAGGCCTAACCAAATCAGATTACGTGGATCTGATAT GGTGCTTTGATAACATGGTGAATTCACTGAATTGATCTTGTAGAAAAACAATCTTTCCTTTTTCCCTTATAAAGTTGTTT TTGTTCTTTATTTTCTTTATACCAAACCTCTCCTGTTAAGGGATTAATACCCTTTTTTGTTCTCTGAAATTATTATCTAG GTTGGCTTTGATGATAAATGACACCACCCTTTTGTAACCCCATGTGCACTGTGCTTTCCAACCATATATTTACACACTTC ATCATATCCACATTCCCTATCACACAACACATCACAATAGGTGCCCACCAACTGTTTGAACCAATGTCCAAACCAATTTC TGTTCCTTAGACAGTAGTAAAAAATTTCTGATTTATATAAGCTATGCTTTTGGTCTTTACTGGTTTTGAAAATATTTCAT GCGTGAGGGTCTTATAATAATTGGACATGTATGTATGACATGATATCTTACTTGAGCTTATAAAGCAAGACTTTTTCCTC CCTAGAAGAATTTCCCTTGAGTGTTAGTTTCTATGCGTGAGTTTGAGGCCAAAAGAGTCTAGAACGTGAGTTTCATTATT GGAAGGGAATGCCTTTATTGGAAGGCTAATGCTCCTTCCTCTTGTGGTATAGTTTAAGCCATAATATGTTTTGCCTCATA TTCTACGCAGAGTTTCTTTAATATCTTTAAGAGTTGTTAGTTTTTTCAAGTTGCCATTGTTTTAGAATTGGGTTTGGGAC TTGGAGTAGTTTTGAGATGAAGATATGAATGCAAAGGAGACATGTCATTGAGTGGGCTAGTTATTGCTTTAAGTGTTGCC TTTGGGTGTTTTCTTCTGGCTCTTGCTGCAGAGCTTTGCTATTTGTTGTGGTGGAAGAAAAGAAGAACTCACACAGAAAC TGAAGAAGAAGACCATAGCAATGATGCAAAGGGGTTGCTTAATGGAGTGTGTTGGAAGGCACCATCTACCACCAATTCAG TGACTGTGAGGAGCAGTGAACCAGAAAACAAAAGTCATGAACCAGATTTGGAGTTAGGTAAGGATGTTGTTGGGTTGAAG AATTTTGGAGAAGAAGGGGTGGAATGTGAGTTGATGAGGCTGCACAACCTGGCTGGTCCTCCAAGGTTTCTGTTCACAAT CAAAGAGGAAAGCAAAGAAGATTTGGATTCTGAAGATGGTAGGAGCAGAAAAGGGTCAAGAACAAGGAGCTTGAGTGATA TAATGGTGGCAACAATTGATTCCCCTTTCCTTAACCCTGTGGCTTCATCACCTTTGAAGTGTTCTTTGGATGGTCTTGAT TCTTTCAAGCACCAAGGGTTCAATCCTCTCTTTGAATCATCAATGGAGTCAGAGCTGAACAGATTTAGATCTAATTCACC ACCTCCAAAATTCAAGTTCTTGAGGGATGCAGAGGAGAAGTTGTATAGAAGATTGATTGAGGAAGCTCAGAGAAAGGCAA AAGCAAATGGTTCTGTAGCAGAATCTGAGGCTAAAGGTCTCCCTAATTCAATATCAGTAACAGATAACAGTAACCGGTCA TTGCTTAGATTTGTCAACAACAAAGAGAGAGAGCAGGTAAAGCTTCAACATCCTTCAAGTTCATCACAGGTTCTTCCACT GTCATCTTCTCCCACAACATTCAAACCAGTTGAGAAAGCATCCATGGTACATTAGATTTTCAAATTACTTGAGGCCTCTG TTAATTCCTCCCCTTCATATGTTAATTACTTTTTTCTTTATGTTTGGAAATCATTATCCAATTGATTCTGCAGTCAGAAA TCAATTATTGTGATATTAGCTTCTGCATTTCAGAATTGATTATGAGAGATAACAGTTTAATTGCCTTGAATTATTTAATC GCCTTGAACTCGTATCAAAATTAAAGCTACTAGTTGTAGCTTCTCATAAAAAATGTGGTTGAGACTTGAGAGCACATCCA AACATGCACTATGGTGGTCATCAATATACAGCTAAATTTGCTAACTAATTGAATGCAAGCTAATATGTTCTCAAGGTGTT TGGCATGCTGTTATCAAACAAAGGACTTGGTGGGGGCCATGTGTTCTTGTCCATTCTCCATGTTGATGTGTAATTAAGAC CTTAACCAGTTACTCATTCATGTGAATGATGGTTATGTGCTACCAATTAATTTTATAAATATAAAAGCTTCAATGATTCA GTTCTTTGTTTTAGACATTTCAGCTATCATTTCGCATACTTGTCCACTTTGGTATTCTGGTATGCAAGTTGATGATATCA TATGGTCCTACACTCCTAGCTGTGTTAATTTGCATCTCCATTCATATTTGTTTTAATTTTTGACAGTTGCCTCCAAAATT TTAAAAATATAATTTTATAGATAGTTAACTTGTATGAGGTAAATAGAAATTCAAACTCATTATCACCTATTCACCTAAGT TATCAAAAGTAGTTCAAATGTATGACTAATATGGTAGGAAAAATATCTGTACAAGTAAACACTGAAATTTTGAATGTGGA TGGGTAAACAACATGACAGCATGTTCTAACTTCCAAGGCAAATTTCAATTGACAGTTGTAATATTGAATATTCAAAGTTA ACAAAAGAATGGAATGTCAATAATTCTTACCTACATGGTTAGGAAAGTGGTGTACAAACTTTGAATTACTTGAAGAGGCT GTGGAAACTCTTGCCAAGAATTTCACCTTTTTCCTACCTATATCGTCACCCAAAAGAAAATGTTTCCTCAACAAGTTGTA GTTTTTATTTCCATCTTGCATTAAAAATATGTTCAACAATGCACTCTGTTAAACACACTTTTTAAGACAATCCAAGTGAT TAATTTAAGTTTCACATGTTTTAAAAAATGAACCAATATATTGTAAAAAGTGTGTGAAATAGTGTGTTGACAAAAG
CDS sequence (LotjaGi2g1v0372100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTGAGTGGGCTAGTTATTGCTTTAAGTGTTGCCTTTGGGTGTTTTCTTCTGGCTCTTGCTGCAGAGCTTTGCTA TTTGTTGTGGTGGAAGAAAAGAAGAACTCACACAGAAACTGAAGAAGAAGACCATAGCAATGATGCAAAGGGGTTGCTTA ATGGAGTGTGTTGGAAGGCACCATCTACCACCAATTCAGTGACTGTGAGGAGCAGTGAACCAGAAAACAAAAGTCATGAA CCAGATTTGGAGTTAGGTAAGGATGTTGTTGGGTTGAAGAATTTTGGAGAAGAAGGGGTGGAATGTGAGTTGATGAGGCT GCACAACCTGGCTGGTCCTCCAAGGTTTCTGTTCACAATCAAAGAGGAAAGCAAAGAAGATTTGGATTCTGAAGATGGTA GGAGCAGAAAAGGGTCAAGAACAAGGAGCTTGAGTGATATAATGGTGGCAACAATTGATTCCCCTTTCCTTAACCCTGTG GCTTCATCACCTTTGAAGTGTTCTTTGGATGGTCTTGATTCTTTCAAGCACCAAGGGTTCAATCCTCTCTTTGAATCATC AATGGAGTCAGAGCTGAACAGATTTAGATCTAATTCACCACCTCCAAAATTCAAGTTCTTGAGGGATGCAGAGGAGAAGT TGTATAGAAGATTGATTGAGGAAGCTCAGAGAAAGGCAAAAGCAAATGGTTCTGTAGCAGAATCTGAGGCTAAAGGTCTC CCTAATTCAATATCAGTAACAGATAACAGTAACCGGTCATTGCTTAGATTTGTCAACAACAAAGAGAGAGAGCAGGTAAA GCTTCAACATCCTTCAAGTTCATCACAGGTTCTTCCACTGTCATCTTCTCCCACAACATTCAAACCAGTTGAGAAAGCAT CCATGGTACATTAG
Protein sequence (LotjaGi2g1v0372100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLSGLVIALSVAFGCFLLALAAELCYLLWWKKRRTHTETEEEDHSNDAKGLLNGVCWKAPSTTNSVTVRSSEPENKSHE PDLELGKDVVGLKNFGEEGVECELMRLHNLAGPPRFLFTIKEESKEDLDSEDGRSRKGSRTRSLSDIMVATIDSPFLNPV ASSPLKCSLDGLDSFKHQGFNPLFESSMESELNRFRSNSPPPKFKFLRDAEEKLYRRLIEEAQRKAKANGSVAESEAKGL PNSISVTDNSNRSLLRFVNNKEREQVKLQHPSSSSQVLPLSSSPTTFKPVEKASMVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 2 | 292 | 291 | 1.8E-105 | – | |
| PANTHER | 2 | 292 | 291 | 1.8E-105 | – | |
| Phobius | 3 | 18 | 16 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 297 | 275 | - | – | |
| MobiDBLite | 64 | 83 | 20 | - | – | |
| MobiDBLite | 264 | 297 | 34 | - | – | |
| MobiDBLite | 269 | 289 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0372100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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