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LotjaGi2g1v0373100.1

Overview

Field Value
Gene ID LotjaGi2g1v0373100
Transcript ID LotjaGi2g1v0373100.1
Lotus japonicus genome version Gifu v1.2
Description ENTH/VHS family protein; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|P47160|ENT3_YEAST Epsin-3; TrEMBL-Plants: tr|I1LK28|I1LK28_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0373100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:87021797..87026945) extracted from Lotus japonicus Gifu genome v1.2.

ATAAATGTCACACTCACTGACTCACACACACACTTTGTTTTCATAACTCACCTGCTTCTATGTTAAATCATTCTATATAC CATCCCAAGGTGTTGATTTTGGTTCTTCTATCTGAGGATTGGTTGAGATTTGTGACCTCAGATTATTTAAAATTTTCTCA TTCTAACCCAAATCAAAACCATCATCTCTTACCTATGTTCCTTCTGTTCTGTACTGTTTCAAGTGTGTTTAGATACATCC ACACAGCTGAACAGAGATAATAGCATCAAAATGAGCTTCTATGATTTCAAAAAGCAAGCTTCTTTCTTCCTCAAGGAGAA ACTCAAGACTGCTAGATTAGCTCTCACAGATGTCACCCCTGCAGAACTGTAAGTTTACCACTTTTTTGACATCATTATAA GGTTTTGATTCTTTCCCTTCAATCTGATTCACAATCAAAACCAGCTCTAGGATTTCTTATGGAAACTATTTTTTCTATGC ATTGTGTGATTTAGTATTTTACTCTTTGCAGGATGACAGAAGAGGCAACCAGTGAAAATCTATTGGTTCCAGATTCACCA ACTCTCAGATCAATCTCAAGGGCTGCTTTTGAGCTTGATGATTATTGGAGGATTGTAGAGATTCTGCATAAAAGGTTTGT TTTTTCCTAGGCCCTTTTGTTTTCCTTAACATGCTTGACATTTTTATGGTAATCAAACCAATCATGGACGAATGAACAAG TGGTAATTCTGAAACAGACTGCTTAAATTTGAAAAGAAGAATTGGAGGGCCTCTTACAATTCCCTGATTGTGCTTGAGCA CCTGTTGACTCATGGACCAGAAAGTGTTGCAGAGGAATTTCAAGGTGACAAAGATGTCATCACCCAACTGAAAGGCTTTC AGTATATTGATGACAGTGGGTATGTTATTCTTTTTTTCTTTTCCATGTTTCTGCATTCTAATTTGTGCTCCAAGATCATG AGGACATTTTCTGAATTTGCAGGTTCAATTGGGGCTTAACTGTCAGAAAGAAATCAGAGAGGGTGTTGAAACTGCTGGAA AAAGGAACTCTTCTCAAGGAAGAGAGAAACCATGCTAGAAGGTTATCTAGAGGAATTCAAGGTTTTGGAAGCTTCCCCCA ACGTTCAGCTCCAGCACAAGGCATTCTACGCGAGAAATCATTGCCAATCACACTTGGCAGATGCAACTCAGACTTAGAAA ACAATGAAGATAATGAAAACAAGTCCACTAGCTCAAACAATGGAATGGACACAGCTTCTGTCAAAACTGATAGCCATGAA GGAGGACTTTTGAAGTCTCTGGATAGTGTGGAAACCAAGAGATACCAGGATGATCTTGGCGAAACTGTAATAAGTTCTAA AGAAAACTTGAAACCTAGCAGGGAGGAATTCCATCTGTGGAATTTGAAAGGGGAATCCAGGTCACTTCTGGATTGTGGAG AAGATGATTCCGGGCTTGGCATCTCCGGAACAGAAGATAATCACCCTTTTAATTCAACAACAGAAATGCATGTCACTGCC TCCTTGGTTTCTTGCTAGAGATCAAGGAATACTACAAGGGTGTCGAAGCAATTTGAAGGTTTGAATGAAGTAAACAAGTT GTTTTGGAAATTGGAAAAATCCCATTTTCCATTCAGAAAAGCTTTCTAGTGAATGTCTTATGGTACATCTAGTCATGTGT GTGGGTTTACCATTATGTTCCTGCGAGTACATCAGCCTACCATAAACAATCACAGTTTTTTTTTCTTCCCTGAACGTGGA TCTTGGAGTGCAGCCTTCACAAGCCACTGTAATGGCAATCACATAACCTTCTTAAGCTACAGTGCATGTTTGAAAGATCT TTGAGAATTGTGTGTTTTATAAGAATCTTGTATTTTGTAAGCTCTTAAAAGAGTAGCTTTTCCAATTGTATACCCGATCA TGGACTCAGCAATGCTTAACCAAATATGTGGACAGACAATATAGACTAAAGCAATTCATCTCCTTACAAAACTCTATAAA CTCTGCAGTTGCAATTGACAATACAAGAAGTCAGTCTGTACGTATCTGACTGATTCAGGAAAGTCTAAACTACATCAAAC CAAGTAACTTTATATCATTTAACGCTTAACTATCACTAATTTGAGCTAAAAAACTAGGAAAGGCAATGCAATTAGACAAA AATAGATATGCAGATGTTAGGCGCCAATCTTGTTTTTTTTTCATCTTCTTTTCCTTTTTTATGCAACAGCACCAAAAAAA TACACAAATTCCAAGGTCCTTTAAAGAAATGGTATGAAATTATTGATTGTATACAGAGATCCAATTTGTATTATTTAGAT GAAAACGGGGAAAGCAATACGTATTAAAATTTTGAAGGGCGTTGTTTTATAGTTAAAAGATCAACTGTTCAACAATGCCA ATAATAAAACAAAAACAAATGAAAGAATTAACTCTGCCATCAAACTCCACTTCCTCTCAGTTAAGTTTTTAACTGATTTA ACAGCCCTTTTTATCAACAGAAAACGAGGATGCTGTATTTTCATTCATCATGCTACCTCGCAGCACTTAGAAGCATTTCC TGTGTACAATTGAAGGACCAGCTTCATCGTACTCTGCCTTTGCAATCCACATCTGCATTTCAAACATGATGTCATACCAT TAGTATCCCCATATAAATGATGAAATCAACAATATACTCACTGTTAGATTTTGATCAGGGAACCGAAATTAGAACCAAAA GACAGGCACATGAGTGATTTCTCAGTCATGCAATGATATGACCAGGGCATGATGCATTAGAATCATAGCAGAAAATTTAC CTGTTGGAAAGTGCTGAGAGAAGCCAAGATAGAACCACCGATCCAGACACTGTATTTTCTCTCGGGTGGAGCAACCACCT TAATCTTCATGCTGCTTGGGGCCAAAGCTGAGATTTCCTTGCTCATTCTGTCTGCAATACCAGGGAACATGGTAGAACCA CCACTGAGAACGATGTTTCCATACAAGTCCTTCCTAATATCGACATCACACTTCATGATGGAATTGTATGTGGTCTCGTG AATGCCTGGAGCTTCCATTCCGATCATGGATGGTTGGAAGAGGACTTCAGGGCAACGGAAACGCTCAGCACCAATGGTGA TGACCTGTCCATCAGGCAGCTCATAGCTCTTCTCAACAGCAGAGCTAGTTTTTGATGTTTCCATCTCTTGCTCATAATCA AGGGCAATATAAGCTAGCTTTTCCTTTACATCCCTTACAATTTCCCGCTCAGCTGTGGTAGTGAATGAATAACCACGTTC GGTTAGGATTTTCATCAATGCATCAGTGAGGTCACGCCCTGCTAAGTCAAGACGGAGGATGGCATGGGGGAGTGCATACC CCTCATAAATGGGGACAGTATGGCTGACACCATCTCCAGAGTCAAGAACTATACCTGCACAAATCAATACAACAAGGGTA AAGGAATCAGCCAAATCCAATGACTTCAGACTTCAGAGAAATGAACTAAGCTCTACTACTTCTAGTCAAATTAGAAAGAT AGTGTTTTCAGTCACAACTTAAGCATGAAGTTATCATGGGGGGGGGGGGGGACCCCTCCACATAGCATTGCACGGCTATA TCTACATTTATTAATCTGCTTAACAATCTTAGAATGTATTGTAGAGGAAACAGAACAATTCTTGTAAGGAAGTAATGACT AACCAGTTGTACGGCCACTGGCGTACAGGGATAGAACAGCCTGGATGGCGACATACATGGCAGGGGTGTTGAAGGTCTCA AACATAATCTGGGTCATTTTCTCACGATTAGCCTTTGGGTTGAGAGGTGCTTCTGTGAGCAGAACTGGGTGCTCCTCTGG AGCCACACGGAGTTCATTGTAGAAGGTGTGATGCCAGATCTTCTCCATGTCATCCCAGTTACTCACAATACCGTGCTCGA TGGGATACTTGAGAGTCAATATACCTCTCTTGGATTGAGCTTCATCCCCAACGTATGCATCCTTTTGGCCCATGCCAACC ATCACACCCGTGTGACGTGGACGACCCACAATGCTGGGAAACACAGCCCTGGGAGCATCATCTCCAGCAAATCCAGCCTA ATTGTTGCAAATTGCAAAATACAGTAAAGCCACAATAAATTAATAGAAATTGAAAGGTAATATTCACAATTTCACACGTG TGCGAAAAAACATTGTAATCAAAACCATCCCAGTATCTTACCTTAACCATTCCTGTCCCATTGTCGCAGACGAGTGGCTG AATGTCCTCACCGTCTGCCATTTTCTTTCAACAGCTGAAAAAATTTATCAGTCAAAAAAAAACCGCTTAGAAAATTTACA ACAAAGACTATATCACAAGCAAAGTCTAACCATGAATATAAAACTAACGCCTAATCGATTCAGTCTCATAAATCAAATCA CCAATTCATCATAGACAAGTCAAAACTCAAACCAATTGTTTCTTTCTAAAAAACATCTGTGCCAAATAAATCCACAGAAA TGGTTGTAAAGCAAAACCTAAGCATGGTGATTTCATAATTCTAATTCCCGTCCCCTAACATTATGAATGTATTATTCCAT GGAATTATTATAATGCACTTTTACTGCCACAATCCCTAACATACAAAATTATTCTTACAATGTAAGCATCATGATTCAAA ATTACATTCCGAAACCACAATCCACAATTCTAATAACCATGCCATAACCGCAATCACCACCACCGTAATCACAATTCAAA ACTACATTTCTCATATTGAATTAATTGAAATGAACCAGAAGTTTCACCAGCTCATTCTCCGATCTGATTTTAACACAATT AATCTAAACACAATCAGATATATCACATTTTCAGATTCGGATCCTGCCGAATTCCGCATCATACGAAACAATGCAAAACA GATTTCATGAATTTCACACATATATAAATATATCAGAAATGAAGAATAAACAGCAGCGGAGAGAGTGGCGGACCTGAAGA AGAAGGAGGTGGCGGTGGCGGTGGCGGTGGTATCAAAGAAGGAGAGAGATGAGAGAAGAGAATGATTTTCTCCGATCTCA GCTACGCCCGCTCTTTGGGTTCAAAAAAAAAAAACAAACTGATTGATGAACGAAAGTAACGCATTCTCTGCATTTCCGTT TTTAAAACTTCCACTTTTTCCCATTCCAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0373100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCTTCTATGATTTCAAAAAGCAAGCTTCTTTCTTCCTCAAGGAGAAACTCAAGACTGCTAGATTAGCTCTCACAGA TGTCACCCCTGCAGAACTGATGACAGAAGAGGCAACCAGTGAAAATCTATTGGTTCCAGATTCACCAACTCTCAGATCAA TCTCAAGGGCTGCTTTTGAGCTTGATGATTATTGGAGGATTGTAGAGATTCTGCATAAAAGACTGCTTAAATTTGAAAAG AAGAATTGGAGGGCCTCTTACAATTCCCTGATTGTGCTTGAGCACCTGTTGACTCATGGACCAGAAAGTGTTGCAGAGGA ATTTCAAGGTGACAAAGATGTCATCACCCAACTGAAAGGCTTTCAGTATATTGATGACAGTGGGTTCAATTGGGGCTTAA CTGTCAGAAAGAAATCAGAGAGGGTGTTGAAACTGCTGGAAAAAGGAACTCTTCTCAAGGAAGAGAGAAACCATGCTAGA AGGTTATCTAGAGGAATTCAAGGTTTTGGAAGCTTCCCCCAACGTTCAGCTCCAGCACAAGGCATTCTACGCGAGAAATC ATTGCCAATCACACTTGGCAGATGCAACTCAGACTTAGAAAACAATGAAGATAATGAAAACAAGTCCACTAGCTCAAACA ATGGAATGGACACAGCTTCTGTCAAAACTGATAGCCATGAAGGAGGACTTTTGAAGTCTCTGGATAGTGTGGAAACCAAG AGATACCAGGATGATCTTGGCGAAACTGTAATAAGTTCTAAAGAAAACTTGAAACCTAGCAGGGAGGAATTCCATCTGTG GAATTTGAAAGGGGAATCCAGGTCACTTCTGGATTGTGGAGAAGATGATTCCGGGCTTGGCATCTCCGGAACAGAAGATA ATCACCCTTTTAATTCAACAACAGAAATGCATGTCACTGCCTCCTTGGTTTCTTGCTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0373100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSFYDFKKQASFFLKEKLKTARLALTDVTPAELMTEEATSENLLVPDSPTLRSISRAAFELDDYWRIVEILHKRLLKFEK KNWRASYNSLIVLEHLLTHGPESVAEEFQGDKDVITQLKGFQYIDDSGFNWGLTVRKKSERVLKLLEKGTLLKEERNHAR RLSRGIQGFGSFPQRSAPAQGILREKSLPITLGRCNSDLENNEDNENKSTSSNNGMDTASVKTDSHEGGLLKSLDSVETK RYQDDLGETVISSKENLKPSREEFHLWNLKGESRSLLDCGEDDSGLGISGTEDNHPFNSTTEMHVTASLVSC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12276
2 311 310 4.6E-93 –
PANTHER
PTHR12276:SF97
2 311 310 4.6E-93 –
SUPERFAMILY
SSF48464
9 156 148 2.49E-38
IPR008942
ProSiteProfiles
PS50942
23 156 134 30.874
IPR013809
Gene3D
G3DSA:1.25.40.90
25 171 147 5.2E-42
IPR008942
Pfam
PF01417
29 150 122 8.7E-27
IPR013809
SMART
SM00273
29 156 128 5.8E-16
IPR013809
CDD
cd03571
31 147 117 2.36129E-47 –
MobiDBLite
mobidb-lite
194 230 37 - –
MobiDBLite
mobidb-lite
206 221 16 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0373100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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