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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0374100 |
| Transcript ID | LotjaGi2g1v0374100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PGR5-like protein 1B, chloroplastic; TAIR: AT5G59400.1 PGR5-like A protein; Swiss-Prot: sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic; TrEMBL-Plants: tr|I1LQP9|I1LQP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0374100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87093685..87096382) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAATACGGCTTCTGTTATAGACCACAAAAGAGAAGAGCAACTAGAGACTCTACCTTGGAATAAAATAAACGATTCTC TCTAAATCCAAAACCAAACAGAGATATTTTTTGTGGCAAAGGGAACCAGAACCTCAATTTTTTGTATCGGAGTATGATTT TGGCGCGGAGGCGCGTGTGAATTACGTTTCTGTTTTAATGGCCGCCACCACGAGCACCTCCCACGTCATCCAATCCACGC TTCTAGAACTTCCAAGAACCAACCGCCTCCTCCGTATCTCTGCCTCCACCCACCGTGTCTCCGCCATCTCCGACCACCGT CCACAGGGTCCCTCCTGCATCTTCGTCGGTCCCCTCGAAACCGCCAACAAAGAAACCCTCGAAGCTCTCTATTGCCAAGT AACATTTCTCGCATTGTATGTTGGTTTTAGTTCTGTTTAGCAGTGATTTTAACATGCTGCTTCTTTGTTTGATATAGGCA CGAGATGCTTATTATAGTGGTGAACCTTTGATAGTTGATGATATGTTTGATAGAGTGGAGGTTGGTACCTACCCTTTTCA CTGTTTAACTTGTTTTGTGTAGAACTGTTGTTAGTTCCTTGGTTTCTGATGTAAACCATCTTTCATATATTTGAAATGAA TGCAGTTAAAGCTAAGATGGTATGGTTCAAAGTCAGTTGTCAAGTATCCTCGATGCAGTATCAGGAGGCAATCCGCATAT GCTGATGCTGAGGTAATTTTCCCCTCAATTTCCTATGTTCTGGTTGTATGGTGCACTTAGTAGTTTTTAGAATGCTTTAC TTAGAGTATTTCTTCTAATGGCGTAGTGTGGTCCATGTAGCCGACCTCACTTAGTAGGATAAGGCTTTGTTGTTGTTGTT GTTAGAGTATTCCTATTCTTGACTCTTTATGTGGCTTAGATAGTTTAGGTTTGTGTTATGTGTGTATGATGTATTTGTGT TCTATTGAGTGTCTGTATTTAGTTTCTATATATTTGGTGGCATATAACATGATCATGTCTATTATTTGGCTAGAAATGTT TAGGTCCCCCTCCCCCATGCTGCTTTCTTTCTTGCCCCCTCCATCTGTCTTTTTTTCTTCCCTTGGTTTCTTCATAGTGA TAGTATATTGAGTGATGTGGTCGTAGGGCAGGAAGATATATCTATGGTTTTTGCATTAGCAAGCACATGGGCCGTGTTCC TTGCTTTTGGCAGTCTAGCATGTCTTGGGCCTCTGTCGTACACTGTTGGCGCCGCTTATCAAAATGCGTTCGATTCAGGA TTGTCACACGGTAGCCATAATCATGGGCTAGGGTTTTCGGTCATGTTGAATAACATTGTCTTCATCGTGCTTGGCTTTGT CATCGGATACCCACTTGCATCAGCTTCAGGTAAAAATAATTTTGCTGGTATCCCACTTTATCATCAGATGCCTTAATTTT CATCTCTGTACTCCAAACATTAAATGCCAAGGAATATTAGTTCAATTGGCCGAGTTCCTTCTGGGAGAGTTTTTCCTCTA CATTCAGTCAATGCCACTGCTTCTATATGTGTATTTTATTGACTGTCTGTTTTCACAGTTAAGGTCATTCAAGGTCTGTG GAGAAATGACTTAGTGGCACTGAGAGGTTCATGTCCAAATTGTGGGGAAGAGGTCAGTCATTGAGATAACAGTCTTACAA GCCTTTTGTTTCTTTCCCATCTTATCCTCAATTTATGTTTATATCTGGCTTATCAAAAAAAAAAAAATGTTTATATCTTC CCAGCTTGAGAGGAAAATGTGCAAGGTTTAAGTTCACTAACTCATGCATACTGGGTTGGGTTCATTTTCTTTCAGGTATT TGCATTTGTGAGGATGGACAGGAATATTGACTCACCTCACAGAGCAGATTGTCATGTGTGTGGATGCTTATTAGAATTTC AGACCAATGTGGAGGTGATAGCATATATTTTTATTTTTATTTTACTTCTTGCAAATGGCTCTTCATAAACCTAACTTCTA TTTATCTTTCATTTAATTGGAGAAAATCGCAAATGCTATGCTGAAATTTTGCAATGCTTGTTGATGATGTGCATGGAAGA GTGTTTTTTTCTCCCCCATTTCCATCTCATCCAATAGAAAGTACCCTCAAAATAATGATTCTGGACTTTACATGACGTGT GGTTTCATCTTGTTTCAGAATTCGGTTTCAAGATTTGGTAGACGTTGGGTTTATGGGCGTATTTTCCTTGTTTCACTGAG AGGCAGAGCTCGCCGCCAAAGACAGCTGTGAATTTTCTTCCCAGCATCATGATTTGCTTCTTTGAATGTGTATAGTAAGG GTCAGAGTACCATCAACTTTCCTATTCTTCTTTTTTAGTCTAGAACAGTTTTGCGTAAGAACAATTTGAAATACATTTTG TAAGGAAGAAGTTGACATGTTAGGATGGTCAACGAATTTCTTGGATTTAATTGTGTATTAGTGTTGTGCTAGATTCTGCA GGTGAAATTTCATACGTAAACTTTGAACATTTGTTCATTTGATGTCAATAACTCAATATCTTAAATAAAATTTCCATTTT TTTATTTTATATTTTTCGTTCCATCGGAAAACTTTTTACTGAATTCTCATAACATATTTTTAGTCGTACATGACAATTGA TGTCTCCTGTAGAACTGGTGCAATTGTTGTTTAAGGGGCGATTCTAACTGCCTTTTGG
CDS sequence (LotjaGi2g1v0374100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCACCACGAGCACCTCCCACGTCATCCAATCCACGCTTCTAGAACTTCCAAGAACCAACCGCCTCCTCCGTAT CTCTGCCTCCACCCACCGTGTCTCCGCCATCTCCGACCACCGTCCACAGGGTCCCTCCTGCATCTTCGTCGGTCCCCTCG AAACCGCCAACAAAGAAACCCTCGAAGCTCTCTATTGCCAAGCACGAGATGCTTATTATAGTGGTGAACCTTTGATAGTT GATGATATGTTTGATAGAGTGGAGTTAAAGCTAAGATGGTATGGTTCAAAGTCAGTTGTCAAGTATCCTCGATGCAGTAT CAGGAGGCAATCCGCATATGCTGATGCTGAGGAAGATATATCTATGGTTTTTGCATTAGCAAGCACATGGGCCGTGTTCC TTGCTTTTGGCAGTCTAGCATGTCTTGGGCCTCTGTCGTACACTGTTGGCGCCGCTTATCAAAATGCGTTCGATTCAGGA TTGTCACACGGTAGCCATAATCATGGGCTAGGGTTTTCGGTCATGTTGAATAACATTGTCTTCATCGTGCTTGGCTTTGT CATCGGATACCCACTTGCATCAGCTTCAGTTAAGGTCATTCAAGGTCTGTGGAGAAATGACTTAGTGGCACTGAGAGGTT CATGTCCAAATTGTGGGGAAGAGGTATTTGCATTTGTGAGGATGGACAGGAATATTGACTCACCTCACAGAGCAGATTGT CATGTGTGTGGATGCTTATTAGAATTTCAGACCAATGTGGAGAATTCGGTTTCAAGATTTGGTAGACGTTGGGTTTATGG GCGTATTTTCCTTGTTTCACTGAGAGGCAGAGCTCGCCGCCAAAGACAGCTGTGA
Protein sequence (LotjaGi2g1v0374100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATTSTSHVIQSTLLELPRTNRLLRISASTHRVSAISDHRPQGPSCIFVGPLETANKETLEALYCQARDAYYSGEPLIV DDMFDRVELKLRWYGSKSVVKYPRCSIRRQSAYADAEEDISMVFALASTWAVFLAFGSLACLGPLSYTVGAAYQNAFDSG LSHGSHNHGLGFSVMLNNIVFIVLGFVIGYPLASASVKVIQGLWRNDLVALRGSCPNCGEEVFAFVRMDRNIDSPHRADC HVCGCLLEFQTNVENSVSRFGRRWVYGRIFLVSLRGRARRQRQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 129 | 129 | - | – | |
| PANTHER | 2 | 280 | 279 | 1.2E-160 | – | |
| PANTHER | 2 | 280 | 279 | 1.2E-160 | ||
| Phobius | 130 | 150 | 21 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 151 | 169 | 19 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 170 | 193 | 24 | - | – | |
| Phobius | 194 | 284 | 91 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. | ||
| Biological process | Photosynthetic electron transport in photosystem I | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. | ||
| Molecular function | Oxidoreductase activity, acting on iron-sulfur proteins as donors | Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. |
Expression pattern of LotjaGi2g1v0374100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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