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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0374200 |
| Transcript ID | LotjaGi2g1v0374200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rab5-interacting family protein; TAIR: AT5G59410.1 Rab5-interacting family protein; Swiss-Prot: sp|Q9CQT9|CT024_MOUSE Uncharacterized protein C20orf24 homolog; TrEMBL-Plants: tr|A0A0L9T6I8|A0A0L9T6I8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0374200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87096851..87099996) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTAACTGAATTAATTAATTAAAATTGATTTTATCATCATAAAATAAACTGTATCAGTGTCGCTCCAAAGAGTACAAG TGACCTCATATCTTCTTCATCTGTGTTTGTGTTGTGATTATGCCATTGACATTAACAAATTAGATCGCAGATCAAATTCC AAACCTTTACCTCTGTGATTTTCAATTCCCTTATCTCCTTTTCCTCCTTCAGATTCGTTTTCGCAATCTGCACTTTCAAT TCCAAAACCCTAATTTTCTCTCATTCCCCTAAATCCACCATCGCCGTTTCTCAACAATTAATAATCACCCATTCAATCAT TGACCAATTACAGTTCAAAAAATCGAACTTTTTCTGAAGTAGTTCAATACCCATCTCTCAATTTTTCGATTTGTTTTGAG TTTCTTCCCCCTCTCTCACTATGAAAGAAGGTAAATCTGTTCAACAACAACAGCAGCACCAGAACGGTCACCTCGCCCCT TCCAAATTCGCCAAATTGTTTGACCCTGAAGCTTCCTGGGACAAGGTTTGTTCTTTCGATTTCATCTTTTGTAGATCCAT CATCTGTAGAAATTTCAGTTGGGTATAGTGAACTGAATTATTTGCCTAAATCTGTTTGAGTTAACATAAAAATAGTAATG TCATTGATATAATCATATGTTATGTAACGTTCTTAGCTTCTTTTTTAGTGGGTGATTAAGAATCATAATGCAGGGAAAGG TCTAATCATAATTAATATTAGTAGTGTTATTACATGATCTTCTTTTGTTTTGTTGTTTGTATACCTTTTTCAATTATTCA AATCAAGCTAACATTCATTGTTTCTCTTTTTGTCTATGTGTTACTTCCAAGTAGGATCAATTGGGAGACGTATTGCATTG GATTAGACAAGGACTCGGCCTTTTGTGTGGATTCCTTTGGGGTTCTATACCTGTGGTTGGAGGAATATGGTTTATCCTGT AAGATTTTCTTATTTCATTCAGCATGTTTATTGCATTCGTCTCATTAATGTTGTATATTGGCTATATTCAACTTGTGCTG TGATATCATGTTTAAGCCATGTTATTGTTCTGATCCCTTGATATTGGTTGCTGTGTCTCTACCAAATGGTGCAATGCGTA AATCTTTAATATTATCTTGGAGGTCCTTGATCGTATTGATTGGGATTAAGTTTACATGGCAGCATTTACTAGACAGTGAT TATTCTACCAAGATTAATTGAATCAGGAAATGAAAGAGTTGGAATTGGGAAATGACCTTATCGTTTTACAGTCTGTGAGT GGATAAGAAATTTTGAGTGATTAAAGCTTCAAGCGTGGTTGAGGTTTGACATAAACTAAGCAACCATAGTGGATTTTATG AAGCTTCTGTTGGGGTTAAAAAAGTTAAGACATTGCTTGTAAGTGTAAATTTTGTTGTGCAACAGCAAAATAAACTCAAC AGTTAGTGCCTGTTTGGGGTGGCGTCTGTGACCCTCCAACGCAAGTTTTTCTTAACACTCCATGTTGTAGATTCTAGATA GATGCGCGTTAGACTCTTCCTCAACGCCTATACAAGCAGGTTCTTAGCCTTAGGAGATAGCAACCTTGTAGATTCTAGAT GGATGCATGTTAGACTCTTCCTCAACGTCAATACAAACAGTTTCTTAGCCTTAGGAGATAGCAACCTCTTGAAGTTTTTA CTTTTTATGTCACTGATTCTTCAGTGTCATGTTTATTGATTCAATGTATTACTATTTGTAGAGATTTGTTTTGTATTTTA GCCTTAAGGAAAACATCTAGTAATCTGTAGAAATAAATTCATCAATGAGATTCAAGCGACTTTTTGTTGCAGAAATCAGT TTATTTTGTACCATCATTTCATAGGCAGAAGATTTGATGAATCGTTGAGACTTTACTAGGTATAGAATCTCAGAGGCTTG ATTTGTCATTTGCCATTGTTACTTCTGTAACATTAAAAAGTCGTCTTTGTCCAAATCTCGAAATTGAATCCTTGGTCTGT AGTCCATTACAGGGTAATTTTCTTCTAGTGCTTGATTTAAACCCATTGTTGCACTTTTATGCAATCTATAGTGAAATGTG ACACCATCTCATTAACACTCTGTAAGTTTGAATTTTATTTGTTTATTGTTGCTTTGTTTCCTCCCTGTTTTGCAGTTTTT TGGTGTTGTCCTCTGGGATTATATACAGTTATTATTCAGTAATATTAAAGGTTGATGAAGAAGAGTTTGGCGGTCATGGA GCTCTCCTTCAAGAGGGGCTTTTTGCTTCCACAACTCTTTTCCTGGTAATATGATAACTTGGTCATTGCTTTGTCAACTG CAGAAAATTAGGCTTTTACTGTACTATATAATCTGTAACTTCACTTTTAATATCTGTGCAGCTTTGCTGGATTCTAGCTT ACAGTTTAGGGCACTTTTGATTGGCTGGCCATTGAAGCTTTTGCTAAATATCCAACATGGTTGAAAGATTTACTTGATTC TGTGACTGGTCAAAGATGCCTCAATTGCAGTTATCTGCGTTGATTCTACGTGAAATGTTCTGATTTTGCAACACATGAAC ACTAGCTTCTGCTTTCCATAGTAAATGGCTGTTTTAGCCCACCATTCTTAATGACACCTTGTGTTGCAGCTAATTTTGGA TTGCAGTACTCATGTCAAATGCTGTTGTTTGTAGAACCATTAAATAAGATTGCTTGCAGGCAAATTCTGAAGGACCATTT ATCCTTGATGTTTATGTCATGCTTTTTTTTTCTTTGGTCCAAATGTTTATGTCATACTTTGTTTCCACTTTCCACATTTT TTGGTTTTGCTACCCGTTTGGATACTAAAGAGCATTAATTGCAGCTTATCTACTAAAATAAGCTCAATAAGTGCTCTTTG GTTATCATCCAAACAAGCCGGGGTTTTGCTTAAAGGCTATCAGCCAATTGTTTGAGCATCCCTTGAAAATAGCTGAAGAT TTTCATGATATTGATTATAGTTGTTTACCAAATGCATGAATTTATTTTAACAATGCTTCCCTTTCTCTTTGTTCCAAAAC TAAAATAATTTTCTAGTTTTTGAGTTTAGAATAAAGGGTATTTGTCACTCAATAAATGAAATTAAGATGTCAAAGAACGG TACATGTTTTGACATTATTAAAATCT
CDS sequence (LotjaGi2g1v0374200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAAGGTAAATCTGTTCAACAACAACAGCAGCACCAGAACGGTCACCTCGCCCCTTCCAAATTCGCCAAATTGTT TGACCCTGAAGCTTCCTGGGACAAGGATCAATTGGGAGACGTATTGCATTGGATTAGACAAGGACTCGGCCTTTTGTGTG GATTCCTTTGGGGTTCTATACCTGTGGTTGGAGGAATATGGTTTATCCTTTTTTTGGTGTTGTCCTCTGGGATTATATAC AGTTATTATTCAGTAATATTAAAGGTTGATGAAGAAGAGTTTGGCGGTCATGGAGCTCTCCTTCAAGAGGGGCTTTTTGC TTCCACAACTCTTTTCCTGCTTTGCTGGATTCTAGCTTACAGTTTAGGGCACTTTTGA
Protein sequence (LotjaGi2g1v0374200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEGKSVQQQQQHQNGHLAPSKFAKLFDPEASWDKDQLGDVLHWIRQGLGLLCGFLWGSIPVVGGIWFILFLVLSSGIIY SYYSVILKVDEEEFGGHGALLQEGLFASTTLFLLCWILAYSLGHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 54 | 54 | - | – | |
| PANTHER | 8 | 125 | 118 | 2.2E-59 | ||
| PANTHER | 8 | 125 | 118 | 2.2E-59 | – | |
| Pfam | 41 | 120 | 80 | 2.2E-11 | ||
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 55 | 85 | 31 | - | – | |
| Phobius | 86 | 104 | 19 | - | – | |
| TMHMM | 104 | 123 | 20 | - | – | |
| Phobius | 105 | 123 | 19 | - | – | |
| Phobius | 124 | 125 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0374200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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