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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0374900 |
| Transcript ID | LotjaGi2g1v0374900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | H+-transporting two-sector ATPase, alpha/beta subunit, central region; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9NY15|STAB1_HUMAN Stabilin-1; TrEMBL-Plants: tr|A0A151SPY7|A0A151SPY7_CAJCA LINE-1 reverse transcriptase isogeny; Found in the gene: LotjaGi2g1v0374900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87199731..87204312) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTTCAGTTCTTAGTTTTTAAATTGAAATTTGAAAACAAAACGTGTACTAAGTTTTTATTGAATTTCAAAAAACCAC ACAATATGATTTTATGATTATGGTTTTTAGTTTTAAAAACACGTAACTTCATTCCAATTCTGCCCCTGTTGACCCAACCA ACTCACCATTAATTAAAGTTGAAGGTGGGCCCGTGGATGTTGAATTGGGTGGGGCGGGTTTGTGCACAAACGGTCACTTG AAAACCCGTCTCCTGGTGCACGTTCAACAGCGTCTTCGCTTCCTACTCCATCGCCGGCGGTGGCGATGCATTCACAAGCG GCGGTTGCCACTTCTGGCGTGGTGGCGCCGGCGGCCGGCGTTCAAGAGGTGGCGGCCGGAAACCAGGTGGGTCAAGCGGT GTCTGAACCGCTTGTAGGCACGGTGGCGTGTTCTGCTGCGGCAAAACGGAGGCAGTTTCGAGCTCTGTGTTATTCTTTGG GGGATGCTTTTTCAGGCCCACCTCCGTTGAATTGGTTACGTGATGAATTGTCTGATGCTAGGAGTATTTGGAATTTGGGT AAGGAGTTTGGTGTTTCTTTTGATGGTGATGAGCATGAGGTGGTAAGCAGGTTGGCTGATATGGAGCGACGGGATGGGAT CGATAACGGCAGTCGTCCAGGCTGCTCTAGTGGCAGGGGCAATGAAGTGGATCAATGAAGCTGCTCTCCTTTAATGTGAG AGGTTTGGGGGTGGGGGAGAAGAGGAGAGTTATTCGTGAGGTGGTTTGCCAGAATCAGGTTGAGGTGCTATGTGTACAGG AAACCAAGGTCCAGAATGTTGATAGTAGACTTTGTGGTATGTTGTGGGGTGATTCCGAGTTCGACTGGAAGGCAGTTCCG TCAGTGAATAGAGCCGGTGGGTTACTGTGTGTTTGGAATTCTCAAGTGTTTGCATTAGAAAGCTGTGTGGAAGGGCCTGG GTTTCTTGGTCTTGTTGGTGTTTGGAAGTCTAACCAACAGCGTTGTGTCATTGTTAATATTTATTCTGCTTGTGACTTAG AGGGGAAGCGAGCTCTCTGGTCTGCGTTGGTTGAGTGGCGTGCAAATTGTCAGATTTCTGCTTGGTGTCTTGCAGGTGAT TTTAATGCTGTTCGGTATGAGGATGAAAGGAAGGGGATTGCAGGTGTGTTGCCATCACAAAGGAGGGAGATGGATGAGTT TAACGTGTTTATTGCTGACATGGAGTTAATGGATATCCCTTTAGCAGGCAGAAGGTTCACTTGGAGGAGGCCGAATAATC AAGCCAGAAGTAGGATTGATAGGTTCCTAATTTCTAATGATTGGGGCAACGTTTGGCCTAATTGCTCCCAATTGGTGCTA AACCGGGATATCTCTGATCATTGCCCTTTGCTGTTGCGGCAATCGTTCCATGATTGGGGCCCAAAGCCCTTCCGAGTGCT TAATTGTTGGCTTGAGGATCACAGGCTACCTTCCCTGGTGGCAAAGTCTTGGGCTGACATGCGTTTACATGGTTGGGGCG CCTATGTGCTTAAGGAAAAATTAAAAGGGCTTAAGGGTGCCTTGAAGACTTGGAACAAGCAGGTTTATGGGGATCTGAAA GTCAAGAGGGTGGAAATTGTTCAGCAGTTAAATTTCTTGGATGTCAAGGAGGAGGAAGATGGGTTGTCTCAGGGGGAGGT GGCTTTGAGGAATCAGTTACTGTCTGAGTTTTGGGCTGTCCTTAGGAGTCATGAATCTTTACTTTGTCAGAAGTCTAGGT CAAAGTGGATTTCTGAAGGAGACCAGAATACAGGTTTCTTCCATGCTACCATAAATTGGAAGAGGAGGGCGAATTCTGTA GTGGGTTTAATGGTGGATGGGTGTTGGGAAGAAGAGCCTAATAAGGTGAAGGGTGCAGTTCATGATTTTTTTGTGAATAA ATTCAAGTCAGTGGCTTGCTTACGACCAAAACTTGATGGCGTTCAGTTTAAGTCTTTATCTGCTGGTGATAATTTTGCTC TAGTAGCTCCCTTTGATGAGCTTGACATTAAAACGGCTGTGTGGGAGTGTGGGGGAAACAAGAGTCCGGGGCCTGATGGG TTCAATTTTAAATTCATTCAGAAGTTTTGGGATGTTATGAAAGGTTATTTGGTTAGAGCGGTGAAGGAGTTTTGGCGTAG GGGTGCCTGGCCTAGAGGTTGCAATGCTTCTTTTATTGTTTTGATCCCCAAGGTGTCATCCCCTCAGGTGCTTAATGACT TTAGACCTATCTCTTTAATTGGTTGTATTTATAAGGTGATCTCCAAATTATTAGCAATTAGATTGAAAGCTGTCATTGGG AAAGTGATTGATGATCGTCAGTTTGCATTCATTGGAGGCCGGAATATGTTGGATAGTGTTGTTGTGATCAATGAAGTTGT GCATGAGGCTAAGGTTAAGAGGCGACCGAGTATCATCTTCAAGGTTGACTTTGAAAAGGCTTATGATTCAGTTGATTGGG GGTTCTTGGAATACATGATGAATCGAATGGGGTTCTGTGCTAAATGGATTGCCTGGATTATGGGGTGTCTTGGTTCTGCA TCTATTTCAGTTTTGGTCAATGGGAGCCCAACTGGGGAGTTCCAAATGGAGAAGGGTCTTAGGCAGGGTGATCCTTTGGC TCCTTTTCTGTTTTTGATTGTGGCGGAAGGTTTGACGGGGTTGTTCAGTAATGCTGTGAGTTTGGGGAAATTTAAGGGGA TTGCAGTGGGCAAGGAGGGTGATTTGGTGGTTTCTTTGCTACAGTTTGCTGATGATACTGTTTTTGTGGGAGAGGCTTCT ATTCAGAATTTGGTGGTTTTGAAAAGTGTCCTCCGGTGCTTTGAATTGGTTTCTGGCCTCAAGGTGAATTTTCATAAAAG TAAATTGGCTTCTATTGCTACTTCCCCTGGTGTTGTTCAACAATTTGCTTCTTTTTTGAACTGCAAAGTTATGGCTATTC CTTTTGTGTATTTGGGCATCCCAGTTGGGGGAAGGGCTAACTGTGTCAAGACTTGGGACCCAGTAATTAAGAAATTGAGG GGCAGATTGTCAAAGTGGAAGCAGAAGATGATTTCTTTTGGGGGTCGCATTTGTTTAATTAAAAGTGTGCTTTCTGCCTT ACCACTGTTTTTTTTTTATCTTTTTTCAAAATTCCAAAGGGTGTGGTGAAGGTGTGTGTTAGTATTATGCGCAATTTCCT GTGGGGAGGGGGTTCTGGAGATAAGCGCATTGCTTGGGTAAAGTGGGAGAAAATTTGTCTCCCCAAGGAGGAGGGTGGCT TGGGTGTGAAGGACCTGACTTTGTTTAACAGAGCTTTACTTGGTAAGTGGTTGTGGAGATGGAGGACAGAGCAAAATTCT CTCTGGTGTCGTGTTTTAAAAGCTAAGTACAAGGATGAGTTGTATGTAAAAGAATCTGCTTGGTGGCGTGATGTTAAGGA TGCCTGTTGCCCGGACTTATTGAATTGGTTTGAGGAAGGGGTTAGTAAATCAGTGCGAGGGGGTGATAGTACTCAACTAT GGCTTGAAGATTGGACTGGATCAGGGAAACTTAGGGATGTTTTTTATAGGCTTTATAATTTGTCTAAGCAAAAACGAGCT ATGGTGCGTGACTGTGGGAGGTGGGAGCAGGGTGTATGACACTGGTGTCTGTCATGGCGGCGTCCGTTAGGTGAGCGGGA GCAATCTTGGCTTTTGTCTTTCTTACAAGTTCTTGATTCTGTCCCTCTTTCAGAAGGCACTTTGGATGGTTGGATTTGGC GACCAAGTCCAGATGGGAATTATTCAGTTAGCTCTGCTTATGCTTTTGTGCAGGCTCCTTTGCTGGGTGGCTCAGATTTG GCTTTTGGGCTTCTGTGGAAATCTTTTGCTCCTTCTAATGTTCAAGCTTTTGTTTGGAGGTGTCTCCATAATCGGATTCC AAGCATGGATAATTTGGTGAGACGTAGGGTTCTGTTAAATGCAGAAGCAGCTGCTTGTAGGTTTTGCTTGGGGGGTATGG AAACTGGCCACCATCTTCTACTGTCTTGTGCTTGCTCCTGGGGGTTGTGGAATCAATGCTACAAGTGGTTGGGGTTTCAA ACGGTGCTCCCTGATTCAATTCGAGCTCATTTTTTGCAGTTTAAGTTTGGGTGGAATGAGTTTCAGCATTTAGGTATTTT GTCTATTTGGTTTGCCACAGTTTGGACAATTTGGGGGATTAGGAATGGTTTGATATTTAGAGGGGAACCAGTTTGTTGGA CTTCTGCTTTAGAATTGGTCAAATGGAGATCTTGGCAGTGGAATAGAGCTAATATGAAGGGATTTTGTTACTCTCTTTTC GAGTGGTCGACAAGTCCGGTGACGTGCGTGTGCTCTGTGTAATTGGTTTGTTTTTATTGGGGTTGGGCATGAGTTTTGTG GGTTGTTTTGAGTAGGTTGGGATGTTTTGTTTGTCCTGGTTTTCATGCTCTTGGTATGCTCTAGTTGTCCATGCGTTTGG TATGCTGGTCTTCTAGAGTGCTTTAGTTTTTTGTTGTTCTTTTCCTCTTCTTTTGTATTTGGGTTTAGCACCCCTTGTGC TAAGTGTGAATACAATATTTGG
CDS sequence (LotjaGi2g1v0374900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAATTTGGTGAGACGTAGGGTTCTGTTAAATGCAGAAGCAGCTGCTTGTAGGTTTTGCTTGGGGGGTATGGAAAC TGGCCACCATCTTCTACTGTCTTGTGCTTGCTCCTGGGGGTTGTGGAATCAATGCTACAAGTGGTTGGGGTTTCAAACGG TGCTCCCTGATTCAATTCGAGCTCATTTTTTGCAGTTTAAGTTTGGGTGGAATGAGTTTCAGCATTTAGGTATTTTGTCT ATTTGGTTTGCCACAGTTTGGACAATTTGGGGGATTAGGAATGGTTTGATATTTAGAGGGGAACCAGTTTGTTGGACTTC TGCTTTAGAATTGGTCAAATGGAGATCTTGGCAGTGGAATAGAGCTAATATGAAGGGATTTTGTTACTCTCTTTTCGAGT GGTCGACAAGTCCGGTGACGTGCGTGTGCTCTGTGTAA
Protein sequence (LotjaGi2g1v0374900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNLVRRRVLLNAEAAACRFCLGGMETGHHLLLSCACSWGLWNQCYKWLGFQTVLPDSIRAHFLQFKFGWNEFQHLGILS IWFATVWTIWGIRNGLIFRGEPVCWTSALELVKWRSWQWNRANMKGFCYSLFEWSTSPVTCVCSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 72 | 72 | - | – | |
| PANTHER | 2 | 125 | 124 | 4.9E-12 | – | |
| PANTHER | 2 | 125 | 124 | 4.9E-12 | – | |
| Phobius | 73 | 92 | 20 | - | – | |
| Phobius | 93 | 145 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0374900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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