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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0375700 |
| Transcript ID | LotjaGi2g1v0375700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Haloacid dehalogenase-like hydrolase; TAIR: AT5G59480.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|P53078|SDT1_YEAST Suppressor of disruption of TFIIS; TrEMBL-Plants: tr|G7JUV7|G7JUV7_MEDTR Haloacid dehalogenase-like hydrolase; Found in the gene: LotjaGi2g1v0375700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87296109..87299144) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCACAGAACAGAGTCTGAGAAGTCGCGTCTGCGTGATAACAAAATACGAACGCGATTCTCTATTCCGTTGTTCAACG TTCTCTTGTTCTTGTTCTATTTAAACTGGTCTCTTCCCTCTATATTCTCCATTCTCTGTTCTGTGATCTTCAATCTTCAT CTTTCTCTCTCGCTTTCGCTTTCGCTTTCGCTCACCACATACAGTAGTAAGTTGTCATTCTTCTTCTCTCTTGCTTCTCG ATGACCCATCTCTCACTTCTGATTCTCTCATTCTCCTCTGCTTACAAATTATCTTTCTGCAATGTCTTGGTTTGTGCATT TCCAATCTTGGCTTCAATTGATGTTTGCTGTGTTTAGAGGTTTATTATTAACATTTTTACTTTTCCAATCTAGCCTACAA AGCTCGAGTTGCAATGGAAAACGGGCAAGTTTCAAACCCAAAATATGATTGTCTTTTATTTGGTACGTAATCATTCACAC TAAGTTCTATTTTTTCTCTTTTCACTTGCATAATCATTGTTTATGTTTAACTTGTTTTTCATAATTTCAGATCTCGATGA TACCCTTTATCCCTTGAGTTCTGGAATATCAGCGCAGATAGCAAAAAATATTCAAGGTAATGTATTCACCCGCACTAGTA TCTTCCATATATATGACGAGGACTTAGATGTGTATAAAAGTAATTGGTAGTACTGAATTATAGCCTAAAGTTGTTGTTAT TCTTGTCATCATCAGAGTACATGCTTCAAAAACTTGGGGTAGAGCCTGCTAAAGTTTCCGAATTGAACTTTTCATTATAC AAGACCTATGGGACAACAATGGCTGGTCTAAGGGTATTGTTCATTTCATTTTTCACTGAATTATGCTAACAACTATTTCT TTGTGCAAAGATGATGATGATTAACGAACCGGAACACTTTTCTCTCTTGTCCCCAGGCAATTGGTTATGACATTGACTAT GATGACTTTCATAGGTAACTTGTCTTTACATAATTGTTTGTACATTTTTCTATTTGGCCATTCATCTTGTTCAAGTTGAA ACTACTTGATATGGAAATCTTAAACTCTTTTTTTTTGTTCTGTTGAACAGTTCTGTTCATGGGAGGTTGCCGTATAAAAG TCTACTGAAGCCGGATCATGTTCTCAGGGGCATTTTGCTAAGCCTTCCTGTTAGAAAAATTGTAAGTTTTTTGTTACTTT TTAAAGGGTCAGTATCTGGTTGGAGGGCAAGTCTCTATATTGATATTATGTATGTATGGTATATTGATATATGTTCATTC TTTGTTTCCCTTTTCAGATTTTTACCAATGCAGACACTGCTCATGCAGTGAGAGCGCTTCGAAGCCTTGGACTGGAGGAC TGCTTTGAAAGAATTATAAGCTTTGACACTCTGAATTCCTTCAACAACATCACTCCGAATGATGGCAAAGATTGCAGTGA AATGAAACCAGTCACTGCAGAAATTTTTGATTTTTGCGAGTACACGAGAGGGACTGATTATGATAAGGTGCTTCCTAGGA CACCAGTTGTCTGTAAACCCTTTGAAGATGCATTTGAAAAGGCTTTCCAGTTGGCTGACATTGACCCTCAGAGAACAGTA AGAGCATAGATACCTCTCCCATTAGTTGTTTAGCTTCTTTCTTTTGTCTCAAATTTGGGTATACACTTTTTAAATTCACA ACCTTCCTATGGTAATTTGAACATGAACAACTAATGACTGCTGATATCTTCCACAGAAAGGGAAACCTTGTAGTTGTCCT TATTGTTTGCATTTTCACTATTTGGCTCTTCAGTCTAAAATTTCCACTTTCCCTTCTAATCTTCAGAAATTCTTTTGTGA CAACTGACAATACCAATATTTATTGACTTCATTTGTTTTTGCTCTTCTCAGTTGTTCTTTGAGGACAGTATCCGCAATTT ACAGACAGCCAAGCGCTTGGGCCTCCACACAGTCGCGGTATGTACTGTTATTTGTTACTGATAAGTTCAAGTCTTCTTAT TTTTACATTGGAATTTGGAACTCTTAATTAGCTTTGAGGGATTTGAGTTAAAGAGAGGGGGAGAGTGAAGAAAAAGAAAA AATGAACATTGTAAAGTTTGTCTGTAATTTTGTTTTTCCTTCAGTGCATATAACGTAATAGAATACACTTTTGATGTGAT TATCTGAATACATCATCACAATCAAAATAAAATCATTTCGATACAATACAATGTGTTTTAAATGTGAACCCCTACATGGA TGCAGGTGGGTACATCTGTTCGTAGTACTGGAGTGGATCATGCATTAGAGAGTATCCATAATATCAGGGAGGCATTTCCA GAGCTATGGGAGGTTGATGAGAAGCGTGAAATTGTCAAGTATAAAGTTGCAGTTGAAACAACAGTGGAAGCATAGCTTAG AGGTTTAACCCTTCAGAATTGTTGTTGGTGTTTTGTATTGTGTTGGCACCTAATTAATGTAATTGTTATTTAAATTTGAT ATGTTTAGATAAGAATCTTAATTTAATTTTGTTTTTCTCAAAAATAACAATGTACCATAGCTTGAAAGCAATTCAAGATC TGTATTCATCTTTAGTTGTTAATAATTCAAAGTGCGGTTAAATTTCCTCATCGATGCGGTTAAGTGTCTCAAAATATTAC TTAGTATGGATACACAAAATCTACTACCAGATACGTTTCTCTCCATTCACAAGGATGAGCATTCAAGTAAATGACTTCCC CTTAAAAATTAAGGTATATTTTTAATTTTAATGACAGTTAAGTCATAAATGTTTGGATTAACATTGTAAGAATTGATTTT GATAAAATTAATTATGATGAGTAGAAAGAAAAGTGATTTGTGTTAGGATATTTTTATGATATAAATAATTTCGGAAATGT GAAATTCTACGATCCAGTGTTAAGCAGCCTAACAAGGATTAACTTAATGTGTACTTCTTTCCTGAGAAAGCTTGGAATTT TGGTTCTTCTACCTTCTGAGGTGACTCTTGACTTGTGCTTTCCAGAGAAGCCTGTTAAGAGAAATTTGGCAATTCA
CDS sequence (LotjaGi2g1v0375700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACGGGCAAGTTTCAAACCCAAAATATGATTGTCTTTTATTTGATCTCGATGATACCCTTTATCCCTTGAGTTC TGGAATATCAGCGCAGATAGCAAAAAATATTCAAGAGTACATGCTTCAAAAACTTGGGGTAGAGCCTGCTAAAGTTTCCG AATTGAACTTTTCATTATACAAGACCTATGGGACAACAATGGCTGGTCTAAGGGCAATTGGTTATGACATTGACTATGAT GACTTTCATAGTTCTGTTCATGGGAGGTTGCCGTATAAAAGTCTACTGAAGCCGGATCATGTTCTCAGGGGCATTTTGCT AAGCCTTCCTGTTAGAAAAATTATTTTTACCAATGCAGACACTGCTCATGCAGTGAGAGCGCTTCGAAGCCTTGGACTGG AGGACTGCTTTGAAAGAATTATAAGCTTTGACACTCTGAATTCCTTCAACAACATCACTCCGAATGATGGCAAAGATTGC AGTGAAATGAAACCAGTCACTGCAGAAATTTTTGATTTTTGCGAGTACACGAGAGGGACTGATTATGATAAGGTGCTTCC TAGGACACCAGTTGTCTGTAAACCCTTTGAAGATGCATTTGAAAAGGCTTTCCAGTTGGCTGACATTGACCCTCAGAGAA CATTGTTCTTTGAGGACAGTATCCGCAATTTACAGACAGCCAAGCGCTTGGGCCTCCACACAGTCGCGGTGGGTACATCT GTTCGTAGTACTGGAGTGGATCATGCATTAGAGAGTATCCATAATATCAGGGAGGCATTTCCAGAGCTATGGGAGGTTGA TGAGAAGCGTGAAATTGTCAAGTATAAAGTTGCAGTTGAAACAACAGTGGAAGCATAG
Protein sequence (LotjaGi2g1v0375700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENGQVSNPKYDCLLFDLDDTLYPLSSGISAQIAKNIQEYMLQKLGVEPAKVSELNFSLYKTYGTTMAGLRAIGYDIDYD DFHSSVHGRLPYKSLLKPDHVLRGILLSLPVRKIIFTNADTAHAVRALRSLGLEDCFERIISFDTLNSFNNITPNDGKDC SEMKPVTAEIFDFCEYTRGTDYDKVLPRTPVVCKPFEDAFEKAFQLADIDPQRTLFFEDSIRNLQTAKRLGLHTVAVGTS VRSTGVDHALESIHNIREAFPELWEVDEKREIVKYKVAVETTVEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 285 | 281 | 5.5E-156 | – | |
| PANTHER | 5 | 285 | 281 | 5.5E-156 | – | |
| SFLD | 7 | 266 | 260 | 0.0 | – | |
| SFLD | 7 | 266 | 260 | 0.0 | ||
| TIGRFAM | 12 | 236 | 225 | 1.4E-66 | ||
| SUPERFAMILY | 13 | 241 | 229 | 8.81E-28 | ||
| TIGRFAM | 182 | 237 | 56 | 5.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi2g1v0375700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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