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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0376300 |
| Transcript ID | LotjaGi2g1v0376300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G25750.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q9C6X9|FB315_ARATH Probable F-box protein At1g44080; TrEMBL-Plants: tr|G7K9R3|G7K9R3_MEDTR Ubiquitin-protein ligase; Found in the gene: LotjaGi2g1v0376300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87370109..87371756) extracted from Lotus japonicus Gifu genome v1.2.
ACTAGAAAAAACAGAAAACTACAACATTACAGACCCAAGGGAAACAGCAGCAACAAGGTAATTAAGGAAAGGCCACACCA AACCGAAACAAAACAGAGCAGAGAGAGGAAACAGGGGTGGAAGGCCCACTTCTTGAGCCAACGGACTTACTTAAACCCGG ATCCATTTTGTCAAAAAACCCTAGAAGGGCTGGCTCAACCATCAACAAAAAGCGTAAAAATAAACTATACTCTCTAAAAC CCTTATTTTCACTTCTTCCACTTCCTCCAATGGAGCGAGATTGGGCGTATTTAGATACGGCCGCTCTTGATTTGATTGTT AACAAGTTGGAAGAACGGATAGATCATGTTTGGTTCGGTGCCGTGTGCAAGAATTGGTGCTCAGTTGCAAAGCTTAGCCA TCAAAACAAGCAATTCAGGAGTAATGTTCTGCCTATGCTATTGATGCCCACAAAAAGAAATAGAAGAACCAAGATAACCA AGAGAAGTTTATATAGCATTCCAGGTAATAGAGTCTACCCATTCCCATTGCCAATGCCTTGCAAGAAGAGGTTTTGTGGC TTTAGCCATGGTTGGCTAGCAATGGTAAGTCATACTAAACACTACCATGAGTACTATCACATAACTCTAATGAATCCTTT TAAAAACGTAGCTCCCATTGCTCTTCCACCATTATATAATATTTCAGGAGTAAATAGGGTTGTTTTGTCTGTTAACCCCT TAACGGACCCAAATGACTATGTGGTTGCTGCAATTCACGGCTCTTGTGATCGTCTTTCATTTATTAGAGCAGGTAAAAAC TACTGGACTCATGTAGCAGTGGAAAATAATTTGTGTTACGCAGATATTACATTTTATCAAGGTCTAGTATATGTTGTGTG TGGGAGGAAGCCGCGTGGCTGGGCCGATTGGGTCGATTTTGACAGAATTATGTCCTTCAATCCCTATTGTTCGGATGATC CTTACCCAAGGGTGAAGATAATTCCAAATATTTTTCATCAAGATAATGAAACTGCAGGCTTTTATTCCTTGCGTGCCTAT CTTGTTAAGTCATTAGAAGGAGACCTATGGATGGTGAGAAGAATTTTGCCTTCTCAATCCAAAAACTGCGAAGATGTTGA TAATGTCGCTTTCAACTTATATAAGTTGGAACTAGATGCCCAAAATGGGAAGGTTTTGCAAATGCTGAAACTGGAGGATT TGGGAGATAACATTTTGTTTGTAAGTGATGATAGTGATTCAACTGCTGTGTCGTCTTCCTATTTCTCTAATTGCCTGCAA AAGGACTCAATTTACTACACTAATGATGTTGGCTCACCAATTCCTCCCTCTCATGACCCACTTGATTTAAGAGTCTATAA TGTAAAGGAGGGAAGGTTTATTCAACATTACCCTTTCAATAATCCTTCCTTCATGCGTGTGTCACCTTCGTTATGGATTC TACCATCATTCCAATGGGATTGATCAATGCAACTTGGAGGATTCTGTTTTTAAATTTTTAATGTTTCATTATGTTCATAT TGATATTGATCAATGCGATTGATTGTACCCTTTTATGCTTGCTACTAAATGAATGTTATTTTACAAAATTGTTTTATTCT TTGTTAAAACTCTTCTCAAGTTATCTTCCGATGTACAAAAATTCCAAC
CDS sequence (LotjaGi2g1v0376300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCGAGATTGGGCGTATTTAGATACGGCCGCTCTTGATTTGATTGTTAACAAGTTGGAAGAACGGATAGATCATGT TTGGTTCGGTGCCGTGTGCAAGAATTGGTGCTCAGTTGCAAAGCTTAGCCATCAAAACAAGCAATTCAGGAGTAATGTTC TGCCTATGCTATTGATGCCCACAAAAAGAAATAGAAGAACCAAGATAACCAAGAGAAGTTTATATAGCATTCCAGGTAAT AGAGTCTACCCATTCCCATTGCCAATGCCTTGCAAGAAGAGGTTTTGTGGCTTTAGCCATGGTTGGCTAGCAATGGTAAG TCATACTAAACACTACCATGAGTACTATCACATAACTCTAATGAATCCTTTTAAAAACGTAGCTCCCATTGCTCTTCCAC CATTATATAATATTTCAGGAGTAAATAGGGTTGTTTTGTCTGTTAACCCCTTAACGGACCCAAATGACTATGTGGTTGCT GCAATTCACGGCTCTTGTGATCGTCTTTCATTTATTAGAGCAGGTAAAAACTACTGGACTCATGTAGCAGTGGAAAATAA TTTGTGTTACGCAGATATTACATTTTATCAAGGTCTAGTATATGTTGTGTGTGGGAGGAAGCCGCGTGGCTGGGCCGATT GGGTCGATTTTGACAGAATTATGTCCTTCAATCCCTATTGTTCGGATGATCCTTACCCAAGGGTGAAGATAATTCCAAAT ATTTTTCATCAAGATAATGAAACTGCAGGCTTTTATTCCTTGCGTGCCTATCTTGTTAAGTCATTAGAAGGAGACCTATG GATGGTGAGAAGAATTTTGCCTTCTCAATCCAAAAACTGCGAAGATGTTGATAATGTCGCTTTCAACTTATATAAGTTGG AACTAGATGCCCAAAATGGGAAGGTTTTGCAAATGCTGAAACTGGAGGATTTGGGAGATAACATTTTGTTTGTAAGTGAT GATAGTGATTCAACTGCTGTGTCGTCTTCCTATTTCTCTAATTGCCTGCAAAAGGACTCAATTTACTACACTAATGATGT TGGCTCACCAATTCCTCCCTCTCATGACCCACTTGATTTAAGAGTCTATAATGTAAAGGAGGGAAGGTTTATTCAACATT ACCCTTTCAATAATCCTTCCTTCATGCGTGTGTCACCTTCGTTATGGATTCTACCATCATTCCAATGGGATTGA
Protein sequence (LotjaGi2g1v0376300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERDWAYLDTAALDLIVNKLEERIDHVWFGAVCKNWCSVAKLSHQNKQFRSNVLPMLLMPTKRNRRTKITKRSLYSIPGN RVYPFPLPMPCKKRFCGFSHGWLAMVSHTKHYHEYYHITLMNPFKNVAPIALPPLYNISGVNRVVLSVNPLTDPNDYVVA AIHGSCDRLSFIRAGKNYWTHVAVENNLCYADITFYQGLVYVVCGRKPRGWADWVDFDRIMSFNPYCSDDPYPRVKIIPN IFHQDNETAGFYSLRAYLVKSLEGDLWMVRRILPSQSKNCEDVDNVAFNLYKLELDAQNGKVLQMLKLEDLGDNILFVSD DSDSTAVSSSYFSNCLQKDSIYYTNDVGSPIPPSHDPLDLRVYNVKEGRFIQHYPFNNPSFMRVSPSLWILPSFQWD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 394 | 393 | 6.7E-79 | – | |
| PANTHER | 2 | 394 | 393 | 6.7E-79 | – | |
| Pfam | 308 | 364 | 57 | 1.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0376300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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