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LotjaGi2g1v0377000.1

Overview

Field Value
Gene ID LotjaGi2g1v0377000
Transcript ID LotjaGi2g1v0377000.1
Lotus japonicus genome version Gifu v1.2
Description Bifunctional nuclease; TAIR: AT5G66050.1 Wound-responsive family protein; Swiss-Prot: sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2; TrEMBL-Plants: tr|G7JYS6|G7JYS6_MEDTR Wound-responsive family protein; Found in the gene: LotjaGi2g1v0377000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:87438247..87443023) extracted from Lotus japonicus Gifu genome v1.2.

AAAAAAAGTTGGTGGCATGAGTAATGATTGTCTTTACCAGATGGCAATCTCATCTTCTTCAAATGCATCATCGATTGATA GATCACATCATCAAATCAAATCAAAATAAAAAATGAGTTTTAACAACAAAAAAATCAAAAAATGAGTAATTAACTAATCA ACCACCATTTTGTTCTGTCTTCTCTCTTTCTCTTCACATTTTCATCTCCACCAACCACCCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTATTCTGTTCTGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGATAAACAAAAATGCTCTG TTCTCGATCCTGCATCCGCACGATCGCCGTCACCGCCGATCACACGAATGCCGCCTCCACCACCCGCTCCTTCCCTCACT CCCTCGCCGTCGATTTCTCGTCCCATCCCTTCCCTCTCATCCGAACCCGTCGTTTTCGCTGTCCCAAATCAATCCTCATT TCCTGCAACTCCTCCCGCACCAGCAGATCCAGTTTCCTCGATCATCACAACAACGACGATTTCCTTGAAGCTTCCCTCCT TCTCTCAGGTCCACCCTCTTCCTTTTCCTCTCTCACCATTTTCATGTCAACACAATGCTTGTACCTTTCTGTATAATCCG CAGAAAAAGAAAAGAAAATTTTAGAATATTCTTTTTATCTTATCTGATCTTCATTTATTTAGCTTATTTATTTTCACTTT TCTTGATGCTTTTCTTTTTATTGTGTAGTAGCCTCTGCAAAATTTTGTTGTTCTTGTTCAAATTTCCTTTGTAAAGTAGT GTTTGCTTGTGTGGATAGTTTCCATGATGCTTGTTGCTGATCACTTGTGTAGAACCCCAATTATATATATGTATTGAAAT GGATTCCATTTCAAGTCTTTAAAGGGTAAAAAGTAAACTTTGATACTATGTTAGTGATGCTTGCCATGGGTCTTTGACTG AATAAGATCTATTCCTAGAAATGCTTCTTAGAGTAATAAGCAAATGGTTCCCACCAGGGACGGATCCAGAAATTTGACGT AGTTATACATATAAATTCGTAACAAAAAAAATTGACATATACTATTAGAAGTGAGAACATTTTTTACCAAAGGGGCACAC GTGAGGACATTTTTTTACCAAAGGGGCCATCCAAAAACACATACTTTTACTACTCAAGTGAGGGCATTTAGGAATGTGGG ACACAAGTGAGCTGTGAGAGCATTTAGCAATGTGGGACAAGAGCATAGAAAAACACATACTTTTACTACTCAAATTTTTT TTCTAATGTTTTTTCCAAATTTAAGTGAGGGTGGTACTTGCCCTCATACCACTACACATGCATCCATCCCTGGTTCCCAC TTTCTAACTTATTTTCTTCCAATTAGTTGTTATTTTCTTTGTGGAAGTTTGCGAATCATCTTACAGTAGTGTATTGTTGT AACTCTTGGTTCTTTTGATCATTTAGGTATATCCATGTGTATGCATCGCTGAAATTTTAATTACTTGCGCAGAAACAATC TCGCACTATCACATGTGGAGGCAACGATTTCAACCAGAGTTACAACGGAAATCACGTAGACCATCGATTCCCTTATCTGT ACAGGAAAAAACTTCAAGGTCATATAATAATTTATCAAGACAAGGCTTTCTGCAGCGTTTCCAGAATCCTACTATTTTTC TCAAGGTTTCTTGTGATGGAGACTATATTCTGCCCATTGTTGTAGGTATGTGATGTGCCTATCTTCTAGTTTAAGTTTCC CTGCCATTTCTAGATGATCCAAGTTATATTAATTTCAATTCTCTGTTAATATAGGGAAGATTGCTATTGAAAAACTTATA GGTGCTGAAGTTGAACAAGAAAGTGAGGTAATTATTTAAACATGTATCCCACTGGTTATGTATTTCTGCTTTCCTGTTCC TGACTGATTAGAAACTGGTTATATTGCAGGATTGCCCAGACCAGTTCCAGTTTGTGAAAGACCTGGTTGATAGACTAGAT CATGAAGTACGAAGCTTAGCATTTCTCACTTTGTATTGGTGCCAATATATATATCCAATCAATTGCTTCTTTTTTCCTGT TAATTTCTTTTACTTCATTATGATGCCAATGGATATAGAATTGCTTCTCTTTCTGTGTTTCTTTCTTGTGCTCATTCTGA TGCTTGTATGTTAGGTCTAGTAGGCAGGAATAGTCTGCAAAATAGCAGCAACACAAAGAATTCCTTTTTGCTTGCTGTTT TACCTTAAGTTTATGGGATTCTCAATATGTAGAGGGAAGCTCATTATATCATCTCTTGACAATGAAAAACTATCTCTATG TAACATCCCCACCAAAAATAACCAAGCTATAATCTTTTCTCATTTGCATATTCAATACCCAGAACCAAATCATACTTGAC CCATCCACTATATCATAGAATACTATGGAAGATATTCTACATTATCTAATGACCTTTACTTTAGTCTAATTGTATCTTTT ATCCCTATCAAGGGTTATTTGGTGAGATCATAGTATCATTACCTATTGCATGACATGTTTGTATTTGAGAATTTCCATAC CCAGAAAAAAAAGTACAATTTGGATACAGTTATTTGATTCCTCTGAACTGCAACTTTCACGTTAGTAATCTACCTGTCCT TGTCCTTGTAGAAGAATTATATTATGATAGCAATGTAGGACGATAAATCTATCATGCTCAGCCAAATTCCTTCGAATAGA AATTGGGTGTCAAATAATTAATTGAGAATTCTTTCCTTCATCTTACTATTTCAGGTGATAATGGTGAGGATTACAGAGAG AGTGGTCAGTACTTACTTCGCCAAATTATACATTAGCCAGGTTTTGTAAACGTTTCAATTCTAAATGATAAAACTCTATG TTCTGCTTTTTCATTCATAAAATTCTCATCAAAGTTAATATTTCTTCAGCCAGGAGAAAGTGGTATTATTAGTCTGGATG CACGTCCCTCAGATGCCATTAATGTAGCAAATAGATGCAAGGTATACATTTTTTAAGAATTTTGATTTTTGATATGGTAA ACCCTGAATACTATATCACACAACTGTTATTATGCAGAAATCATAATAATATGCATTCTGTGCAAGGATGTTAAACAAAC CGACTTGTATGATTTTAAAATTGATTTTTGCAGGCTCCAATATATGTAAGTAAACAAATTGTTTTCACAGATGCTATCAG ACTTGGTTATGGAATGGGAGGAGTGCTTAAGAAAAAGGCTACTTATGATGTATTGCTTGACAGGTATTACAAGTTATCAT GAGTCCCCCACCTCCCACCCCTCTTCTTTACATTCTTGGTATATCATTTGTGAGCCTTGACACTGTGTTTGCTACAGTCC TCTAGATGGTCCAGATGTGGTAGCTCAAGAACTGAGTATGATGCGTAGTATGCATACAGCCATCAAAATGGAAAGATTTA AAGATGCAGGTAAAGGGTACAATTATTTGAGCTTATTTTAAAGCATAAGTGCTAATGTAAGTGTTTGGGTAAGTTTGTGG AATAACTTATAATCTACTTATAAGATGCTTATATTAGCTTATGAGTAAGAATTTATATCTACCTTTACCTTATTTCAGTA AGCTTCTCAAATTGTCTAACGAATAAGTGTTTATCGTCATAAATGTTTAATTAAACTGTTTACCCAATCGCACACATGTT ATAACATGCGCAAGTAGACAGGTCATGAAACGTGTGCCTTGTGAAAGTGGGAACACCTAAAACAGGGTAGTGTTATGGAA GAAATAATAATCTTAAACTTGTTGGTTGGCTTTTGCAGCTATATGGAGAGACAAACTTGCAAATCTTCGTAAATCTTCTC ATGGGAGCTAAATACCTTGTTAGGTATATCATAAACTGCTTTGCTCCAACCTTTGCAAATTGATGTTAAAAATAAATGAA CAGAATTCTGTGTCTACTGTGGTTTCATTTTATACATGTCTAATCTCATGTTGTAAATTTTCATGTGGTGATTGATGACA GGGCAAGTTCTGAAGAAGAATGTATGGATATCCTTTCCTGATAATTTTTTCAACAGGAATATAAGATAGAGATGAAGGAC AATAGCAAAATTATGTGTTGTACAGTTGTGTATTATAGTAGTTTACTAAAGTTTGTGTACATAAAAATGTATTAGAATGC CAGAAAACTTGTACTAGGCTACTGGGGGGCTACCAGACTTCTACTGATTACTTAGAATTGCGATGATGATCAGAGCATGT TCGCAATCCTTGAATTGATCCTTGATTCGAAGAATTTATAGTGAAATGTTCAAGAATTAATTCTGATTGCAAGTTACAAG TCTTAGTTTTTGATATGTTTTGGATTCTGGGCAAATTGTGAAACCAAATCAATGCTCTGATATAACCTTGGCTCTATGAT ATGACTGAATGCAAAATAAAAATGTATTCCTTGACATCGATAGTTCTTTGTGACGCGATATCACTAATTGACTAATGATG ATATTAGCACTGTTTTAATGTGCTGTAACAAGCTTGGCGTGTTAGTCTGTTCATTAAAACCAGATTTTCATTTTCAGAAG AAGAAAGATTTTCATTCTCTGTCCATTAACGGAATGTAGATGAGACTATTAACAGTAGCATTCCAATTTTCCAAAGATAA CAAAGGCTGCATCAAGGAGCCAGTTCCCCCTGTATAGATTACTCATTACCTCATGAACATGAAGATGTAAACTAGGATTT CCCTAACCAAAAATTGAGCTTGAGTTAAGCTTATTTTCGTATTTTAGAAATTAGACA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0377000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCTGTTCTCGATCCTGCATCCGCACGATCGCCGTCACCGCCGATCACACGAATGCCGCCTCCACCACCCGCTCCTT CCCTCACTCCCTCGCCGTCGATTTCTCGTCCCATCCCTTCCCTCTCATCCGAACCCGTCGTTTTCGCTGTCCCAAATCAA TCCTCATTTCCTGCAACTCCTCCCGCACCAGCAGATCCAGTTTCCTCGATCATCACAACAACGACGATTTCCTTGAAGCT TCCCTCCTTCTCTCAGAAACAATCTCGCACTATCACATGTGGAGGCAACGATTTCAACCAGAGTTACAACGGAAATCACG TAGACCATCGATTCCCTTATCTGTACAGGAAAAAACTTCAAGGTCATATAATAATTTATCAAGACAAGGCTTTCTGCAGC GTTTCCAGAATCCTACTATTTTTCTCAAGGTTTCTTGTGATGGAGACTATATTCTGCCCATTGTTGTAGGGAAGATTGCT ATTGAAAAACTTATAGGTGCTGAAGTTGAACAAGAAAGTGAGGATTGCCCAGACCAGTTCCAGTTTGTGAAAGACCTGGT TGATAGACTAGATCATGAAGTGATAATGGTGAGGATTACAGAGAGAGTGGTCAGTACTTACTTCGCCAAATTATACATTA GCCAGCCAGGAGAAAGTGGTATTATTAGTCTGGATGCACGTCCCTCAGATGCCATTAATGTAGCAAATAGATGCAAGGCT CCAATATATGTAAGTAAACAAATTGTTTTCACAGATGCTATCAGACTTGGTTATGGAATGGGAGGAGTGCTTAAGAAAAA GGCTACTTATGATGTATTGCTTGACAGTCCTCTAGATGGTCCAGATGTGGTAGCTCAAGAACTGAGTATGATGCGTAGTA TGCATACAGCCATCAAAATGGAAAGATTTAAAGATGCAGCTATATGGAGAGACAAACTTGCAAATCTTCGTAAATCTTCT CATGGGAGCTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0377000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLCSRSCIRTIAVTADHTNAASTTRSFPHSLAVDFSSHPFPLIRTRRFRCPKSILISCNSSRTSRSSFLDHHNNDDFLEA SLLLSETISHYHMWRQRFQPELQRKSRRPSIPLSVQEKTSRSYNNLSRQGFLQRFQNPTIFLKVSCDGDYILPIVVGKIA IEKLIGAEVEQESEDCPDQFQFVKDLVDRLDHEVIMVRITERVVSTYFAKLYISQPGESGIISLDARPSDAINVANRCKA PIYVSKQIVFTDAIRLGYGMGGVLKKKATYDVLLDSPLDGPDVVAQELSMMRSMHTAIKMERFKDAAIWRDKLANLRKSS HGS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 20 20 - –
PANTHER
PTHR15160
43 318 276 1.1E-55 –
Gene3D
G3DSA:3.10.690.10
122 259 138 3.7E-23
IPR036104
ProSiteProfiles
PS51658
123 256 134 31.938
IPR003729
SUPERFAMILY
SSF103256
133 257 125 2.75E-26
IPR036104
Pfam
PF02577
136 254 119 4.3E-20
IPR003729

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004518
Molecular function Nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0377000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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