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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0378700 |
| Transcript ID | LotjaGi2g1v0378700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT4G35900.1 Basic-leucine zipper (bZIP) transcription factor family protein; Swiss-Prot: sp|Q84JK2|FD_ARATH Protein FD; TrEMBL-Plants: tr|A0A1J7GE60|A0A1J7GE60_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0378700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87563726..87565159) extracted from Lotus japonicus Gifu genome v1.2.
ACCCTCCTCACCTCTCTCTCTCTCTTTGCCCTCCTATCTATGACTATCCCTTCAAATCCTACCCATCTTTGTAACACTGC ACTATTTCACCAAATGTCACTCACCACTCATCATCAAATAGAGCCTCAATCTCAAATTCAATAGAGGAGTCTCTTCTTTT TCTTCTCTCTGTCATCATCTTCAACCTACTATCTCTTCGAAGAAGCACCAGAAAACGATCAATGGAAGAGGTTTGGAAAG ACATAAACCTTGCTTCCTTGAATGACCACAACACTCACCCCTCCACAACCCATTCCACCTTTGGGGGTGCAATCTTTCAG GACTTTCTTGGTGGACACTTTCCACCAAACACCACCGTCTCTTCTTCCTCTCTTTCTGCTTCTCCACAAAGCACCTCTCT GTATTCCCCTGCTCCACCACTCGTCACCGCTCTCAGCTTGAACTCTCGCCCTGACTTCGCGTTTGATCCTCTCAGGCCCA ACAACAAATCACAGTTACCGCAACCCCTTCACCACCACCACCACCCTCCCTCAAAGCCTTCTTCCCCTTGTTTCCCCATT AATCCACCTCCACCTTTCGACAACCACCTCCCCTTCACTTCCCCACTACCCTGTTTTGGAAGCAACAAGAGGTTCGCTGA ACCTGCTGATTACGGCCTCGGGGACAGACGAAACAAGCGTATGATCAAGAATCGTGAGTCTGCTGCACGATCAAGGGCTA GAAAGCAGGTAAAGATTCCATTTACATACATTGTTTTGAACTTGAAAAATTCCATGTTATTTTGTCATTTTCGGTAATGT GACTCTGTTTTTTTGTTGTTGTTTTCAGGCTTACACAAATGAGCTGAAGCATAAAGTTGATCATTTGCTGGAAGAAAATG CAAGGCTCAAAAGACAGCAACAAGAGGTAGTAACTGTAGTACTTTGTTTTTGTTAGTTAATTGTTACTTGTTATTACACA TAAATAGCAATAGACAATGTTTCATTCTTTTGTGTAACTACTTGTTATTGCAGTTGTGGGAAGCTGCAGCGGGTCAACAA AAGAAGAAGAGCAACCTATACCGATCAGCTACAGCTCCATTTTGAGAAGTATCTAGTGGTGATACACCTGAAGATCTTAC CCATTGTGTTTTGTTTGTGTGGTTGTGACTCATCCACCTTTTAGTTAATTAATCTAACTTCCTTTTTTAGATAGTGGTGC TTTGGGGATGAATAGATCTATATAAGGGAAGAATCGATAAAGTGCTTTTTTTTGTATGGGGACCTAATGATAATTTTGAT GGGTGCATTGTTTTCCTTGTTTAGATGTTGTGGATTCTTTGTCGTTTGGGGAAAGTGAATGAGTGAATGGGGTAGAAGAT TGATAATGGTAGGGAAGGGAATAGTCAAGAGCAGTGTTATCAGACTCGGACCGGTGATCGACTCGGTCGAGGTA
CDS sequence (LotjaGi2g1v0378700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGGTTTGGAAAGACATAAACCTTGCTTCCTTGAATGACCACAACACTCACCCCTCCACAACCCATTCCACCTT TGGGGGTGCAATCTTTCAGGACTTTCTTGGTGGACACTTTCCACCAAACACCACCGTCTCTTCTTCCTCTCTTTCTGCTT CTCCACAAAGCACCTCTCTGTATTCCCCTGCTCCACCACTCGTCACCGCTCTCAGCTTGAACTCTCGCCCTGACTTCGCG TTTGATCCTCTCAGGCCCAACAACAAATCACAGTTACCGCAACCCCTTCACCACCACCACCACCCTCCCTCAAAGCCTTC TTCCCCTTGTTTCCCCATTAATCCACCTCCACCTTTCGACAACCACCTCCCCTTCACTTCCCCACTACCCTGTTTTGGAA GCAACAAGAGGTTCGCTGAACCTGCTGATTACGGCCTCGGGGACAGACGAAACAAGCGTATGATCAAGAATCGTGAGTCT GCTGCACGATCAAGGGCTAGAAAGCAGGCTTACACAAATGAGCTGAAGCATAAAGTTGATCATTTGCTGGAAGAAAATGC AAGGCTCAAAAGACAGCAACAAGAGTTGTGGGAAGCTGCAGCGGGTCAACAAAAGAAGAAGAGCAACCTATACCGATCAG CTACAGCTCCATTTTGA
Protein sequence (LotjaGi2g1v0378700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEVWKDINLASLNDHNTHPSTTHSTFGGAIFQDFLGGHFPPNTTVSSSSLSASPQSTSLYSPAPPLVTALSLNSRPDFA FDPLRPNNKSQLPQPLHHHHHPPSKPSSPCFPINPPPPFDNHLPFTSPLPCFGSNKRFAEPADYGLGDRRNKRMIKNRES AARSRARKQAYTNELKHKVDHLLEENARLKRQQQELWEAAAGQQKKKSNLYRSATAPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 216 | 216 | 1.7E-43 | ||
| PANTHER | 1 | 216 | 216 | 1.7E-43 | – | |
| MobiDBLite | 79 | 110 | 32 | - | – | |
| SMART | 145 | 209 | 65 | 7.4E-11 | ||
| ProSiteProfiles | 147 | 196 | 50 | 11.013 | ||
| Pfam | 149 | 200 | 52 | 1.6E-12 | ||
| CDD | 149 | 203 | 55 | 3.87951E-26 | – | |
| SUPERFAMILY | 149 | 198 | 50 | 3.88E-11 | – | |
| Gene3D | 149 | 201 | 53 | 2.5E-15 | – | |
| ProSitePatterns | 152 | 167 | 16 | - | ||
| Coils | 172 | 192 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0378700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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