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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0381000 |
| Transcript ID | LotjaGi2g1v0381000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ-like protein; TAIR: AT2G17880.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic; TrEMBL-Plants: tr|V7CIF3|V7CIF3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0381000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87755201..87757727) extracted from Lotus japonicus Gifu genome v1.2.
CCCGATTCTTCTGAACGCACTCAATTTTATCATTAATTTTCTACCGACTTAAGCGTTAGAATGTCATTTATAAGTATCTA CCTTATCATAAAATCGTGAGCAATTCTCACCACCATGCACCACCACTCCAAGAATTTCTCTCCCAAGACTTTAAAAGAAA TGATGTGGATATGAGTAAATACAAAAAAACGGATATATAGGAAAAATACAAGTTAATAAATATGACAAGGATATTTAACT GAGAACACTAGTGGTGACAACTGGAGAGGGAAATTCGAGATAAGGTAAGAGCCAGACACGTCCTGAGTCAGCAACGTCCC CCCAGTAAGCCCATTGGATAAGTTCCCTTCCCTCTGCTTCTAGAAAACAAACTAACAAAACCACGGGAAGTAGGGTCCAC GCGCCCCCTTCACACTCTCTCTCCTCTCTTTATATAATAACCCTAATCCCCAATTTCTTCTCATCATTCATTCCAATTCC AAATTCCCAATTCTCAATCGCAACACACAACAATGATTTCTGCAATCTCTTTTCCTTCATCTCTCTCCGCCGCGAATCTC ACCGGCAACACCGTCGCCACACCGCCTCGCCGCGTCAGATCCCGACCTGTAGTCTCCTTCGCCACAGCTACAGCCACCGC CACCTCCACCGCCGATGCTAGATCCACCTGGACGGAGCAACCGAGACCTTCTTCTACATATCTGATCTCCCCATGCTCCT CTCTCTACGAGATCCTCGGAATCCCCGCCGGCGCATCCAGTCAGGAAATCAAAGCTGCATACCGGCGGCTAGCTAGAGTT TGCCACCCCGATGTGGCGGCAATCGACCGGAAAAACTCATCTGCCGACGATTTCATGAAGATTCACGCTGCGTACTCCAC GCTATCAGATCCTGAGAAACGCGCTACTTACGACCGGAGCCTATTCCGGCGACAGCGGCCGATGTCGACGGCTGTGGTGT TCTCCGGCTACTCGAGCCGGAACTGGGAAACGGATCAGTGCTGGTAGTGAGTTGACTCGGCCGAGTTAACTAAAATATCT AGAGACGAGAGAGGAGGCGCAGTTTATTGTAGCGTCTTGCCTTGGCTTTGAATATAACTAAACTAATTAATTAGTAGTAG TTAGGTATTAGAGTACGTATGTATGTGTGTACATATACGCGTAGAGATGTAGTAGACGCAGCTTGATTGTGCTTGCTGAT TGCAAATTTGGATACTGCCGAGTTTTCCTGCAATACAGTAGAAATTGATGGCCACTGTTGCTTAGTACTTACAGTAAACT CTCTTGTTCTTGTATCATATCCTTTTTCCCATGATTACATCTTCATGGATGAATGAACAAAAGAAAAAAAAAAAAAAAAA TTGACATCTAGTTTATATGAATGCCTAATGTGTTCACTTAATTCTTGTTTGTGATATGCAATTTAAAATAAAATTAAAGT TCATTAGTGATTAAGTATCAATCAAAACTCAAAAGCATAACCTAATTGACATATAATTGAATTGATAGAAGGTTATTATT TGGGTGGTGGTGATTGAGATCTGTGACTACTGTGATGGTGGTTGATAACGTAAAGTGCAAACACAAAGTTAGTTGGTTTT TCTAAAAAGAAAACAGGGACACATGCCCATGCTTCTTAAGATTGTTACAGGTCTCAAACATCTCCTTTCCGTTATTTGAA TATTTAATACCTTGAGGAACCTAATATGATTGATTAACTCCCTGACAATCCGTAGGATCAATTGAAATATGCGCTCAATG CAAGTTTTAGGAAAAATATGCAACTATAGGTATAGTATACTGAACATGAAACCAAGGGTTAACTCTCCACTAGCTCATGT TTGTGCTCAATAATGGCAAATTTTATTTTATGAAATATATGTTCGGGAGACAGGGGAACCCATAAAAAGTAAGCTTCCAT CAATGAGTTAACATCTAAGATTACTGAGAGAATAGACACTACATCGATCCTTACTCAAAATTTTACGATTGTATTTGCGA GTTAAGTTTTTTAGGAGAAAGAAGAAAAATGAAAACCTTATAACAAATGCTTTTATGCAAGCCTTTTGGTCGAATAACAT GTCTTCAAATCAGGTGGCTTAGAAGCTGGCCGAAGCGCCCTCTCCTTTCTTTCCCCTCAAACTCTTCCATTTCCCTCCCT CAAAACTCAGACACATCCTAAGATATTAGTTATGTGAGTCATATCTCTTATACTTGCCCAATTTTATTTAATGTGAGATT CTAATTCACACTTGAGTTTCCAAATTTACCTCGTACATTATTATGCACCCCACTAGCGTATGTTTTGAGCATTTGCACCT ACGTCGACTTTGATATCTCTCATTGAGAGACAAAAAGAACTCAGACATGAGAACTTGCATCAATAAACTAACAAGAGATA TACACACCACATTTTTACTCACAATATCAAGTCATTAAATTCATGGTCTCATATCCTATATTTTCTTCATCTCATCAATT ATTTGCTAACGTGTGACTCCATCCAAACAGCATTATCTAGAAGTAAA
CDS sequence (LotjaGi2g1v0381000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCTGCAATCTCTTTTCCTTCATCTCTCTCCGCCGCGAATCTCACCGGCAACACCGTCGCCACACCGCCTCGCCG CGTCAGATCCCGACCTGTAGTCTCCTTCGCCACAGCTACAGCCACCGCCACCTCCACCGCCGATGCTAGATCCACCTGGA CGGAGCAACCGAGACCTTCTTCTACATATCTGATCTCCCCATGCTCCTCTCTCTACGAGATCCTCGGAATCCCCGCCGGC GCATCCAGTCAGGAAATCAAAGCTGCATACCGGCGGCTAGCTAGAGTTTGCCACCCCGATGTGGCGGCAATCGACCGGAA AAACTCATCTGCCGACGATTTCATGAAGATTCACGCTGCGTACTCCACGCTATCAGATCCTGAGAAACGCGCTACTTACG ACCGGAGCCTATTCCGGCGACAGCGGCCGATGTCGACGGCTGTGGTGTTCTCCGGCTACTCGAGCCGGAACTGGGAAACG GATCAGTGCTGGTAG
Protein sequence (LotjaGi2g1v0381000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISAISFPSSLSAANLTGNTVATPPRRVRSRPVVSFATATATATSTADARSTWTEQPRPSSTYLISPCSSLYEILGIPAG ASSQEIKAAYRRLARVCHPDVAAIDRKNSSADDFMKIHAAYSTLSDPEKRATYDRSLFRRQRPMSTAVVFSGYSSRNWET DQCW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 49 | 49 | - | – | |
| PANTHER | 3 | 164 | 162 | 1.7E-76 | – | |
| PANTHER | 3 | 164 | 162 | 1.7E-76 | – | |
| Gene3D | 60 | 151 | 92 | 8.3E-24 | ||
| SUPERFAMILY | 65 | 140 | 76 | 4.32E-22 | ||
| SMART | 69 | 129 | 61 | 4.7E-21 | ||
| ProSiteProfiles | 70 | 137 | 68 | 18.288 | ||
| Pfam | 71 | 134 | 64 | 1.1E-21 | ||
| CDD | 72 | 126 | 55 | 1.64616E-19 | ||
| PRINTS | 72 | 90 | 19 | 5.1E-14 | ||
| PRINTS | 90 | 105 | 16 | 5.1E-14 | ||
| PRINTS | 109 | 129 | 21 | 5.1E-14 | ||
| ProSitePatterns | 114 | 133 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0381000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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