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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0383000 |
Transcript ID | LotjaGi2g1v0383000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain-containing protein, putative; TAIR: AT2G18060.1 vascular related NAC-domain protein 1; Swiss-Prot: sp|Q9SL41|NAC37_ARATH NAC domain-containing protein 37; TrEMBL-Plants: tr|A0A061DFT4|A0A061DFT4_THECC Vascular related NAC-domain protein 1 isoform 1; Found in the gene: LotjaGi2g1v0383000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87939493..87944369) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTCTCTCACTCTTCTTCTCCTTCTCCTTCTCCTTCAACTTCATCAACCTCATTCATTCATAATTCATTTTGTCTTCA TCTCTATACCACTATAACTCATCTTCAGGTTCAGGTGAGCGACCTCATAACACTAGCTAGCTAGCTAGCTTCAATATTCT TTACTGCATCATCGATCTTCAACCAGAACTAATGCATATTTGGTTTTCTTTTCCAGTGTACACAAACAGAATCATCCTTA CAATTTCATGGAAATTCACTCATGCATGAAACCTTACTATTTTTTTCTAGTAATTTCCTATCATCAATTTTGCTCATCTC CTCCACCATTCTATAAACAAATTATATTATAGCAACCTTCAACATTCCATGCATCAACCATTTTGTTATTGAAATCTAAT TCACCTCAACAATCATGCATGGTGCGTGTTTATAGAAATTCCTCTTAAGCTAGGTTATATTAAAGAAAGAAAAATAAGAG TAGCAACTAGCAGCACCTGCACTGCACACAATATGCAGAGATAGATAAAAGTAGTCATTTGGGGTCAGTGCATTTTCTCA AAGTCCGTTAAGGCTAGAGGTCAGATTTTGCTGTTGAAATTCTCGACAAACAGACAACAAAGTCAGAGTCCCAGTTTCCG CAATGAGACGAAAAACCAACACATTCTCTCTTCTTTTTTCATTCTTTCTCAACCTTTGCTTTTTGTTTACCATGGTTTCC TGCAAAGGCAGGCCTTGATCCAATACAACACAACGCTGCCTCTCTTTTTGCCCCTTACAACTTTTTCCCTTTTGAGAAAA CGCGTGCCCAATTTGCTGTGATCACGTCACTCCCTCTATTCCATTAACTTCCCTTATTCATTTCATTTTCAACCTCCTTC TAAACTCCTAGCTTATACAATCATAGTAACTAATTAACTTGTCTCGGTTTAGTATACTAATAATACTAATCCCCCTGAAA AAGTTGTTTTTGGTTGTTTTATACATGTCATTAAGTATATTAAGTACTGCTTAACCTTATCTGTCTCATTATCTTTGAAT ATACATACATACAGTACATAATAATTAATAGTAATGTGGGAATGTGGAACCCCGTTCCTTGATGAATCATTCCCACCATT CACCAACACAAGACAACATCATTAGCACAAGCCTCTACCTGTCCCGTTTCTCACACAAACTGATAGAGGGCTAGCTATTC TAAGCTCCATCCATCTCTCTCATTTTCTTTATAAATTTATCAAAACCAAACCAAACCCTCCTCATGATTTAGTTTCTCTC TCTCTTCCTCTTCCAAACTCCTCATCATTGTTTCTGAAATCATGGGGTTTTGTTTGTAACACGCGCTTAATATTTATTTC TTTTAATTTTTCTGATTAACTCTGGTGAGTGTTGCTCACCACCAAATGAGCTGATCATTATCTCTGATAACACTTGTCAC CTTTTTGCTAAAAGTACTTACATTTTTCTCTCCTTAATTTATTTTCTTCAGGGTTTACCCTTTTTTTCATTTTACTAGAG TTTGGCTTCTCTTCTCTCTCATATATATTCATTCATTCATTCACAGTACTCACATCACATCTTGGTTGGTTATAATTCAC ACATGATGAAGAAAGTAGTCAAGTGTGGTGGTGGGTATTAATGGTGGTGTTGAATTTGATGCAGCACCAGCAGTAATTGG TATGATGGAGTCAATGGAGTCATGTGTCCCACCTGGTTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATC TCAGAAAGAAAATAGCTTCTCAGAAGATTGACCTTGATGTTATCAGAGAGATAGATCTATACCGTATTGAACCATGGGAT CTCATAGGTATGCATACAAATACACATAATACTACTACTACTACTGATCTTACACTCATGCATAACATTTTTCCAAATCA AATACTAGGGTTTTGAACTTGATCTGATAAAACCATCAATTCTTCCTTTGATACTAAGTATTACAATTATAATATAAAGT TCATTCATATACTTTCACCTAAGCTAGCTTTTGATATGGTTGGTTTATGATGGTAAGAAAGATCTGTCATCTGTGTTAAT TAGTTTGTTTAGTTTTCTTTCTAAAATTGAAGGAAGTTGTGTCAATGATGTGAATGCAGAGAGATGCAGGATTGGGTATG AAGAGCAGAGTGAATGGTATTTTTTCAGCCACAAGGACAAGAAGTATCCAACAGGGACAAGAACTAACAGAGCTACCATG GCTGGGTTCTGGAAGGCAACAGGAAGAGACAAGGCAGTGTATGACAAGATGAAATTGATTGGAATGAGGAAGACACTTGT TTTCTACAAAGGAAGAGCACCTAATGGACAGAAAACTGACTGGATCATGCATGAGTACAGGCTTGAAACTGATGAAAATG GACCTCCACAGGCAAGCATATATAGATATAATTACTCCATATTCTTAGAGTGCATATATGTGCCATATATTCTTTTACAC AATTTGACTATATATTGTTGCTTACTTCACTTGAGTAGTTGAGCTTGAAATGTTACCTTCAAACTTGATTGGATCAAGCA GTAGTGATAAGTAGACACTCAAAAAGTATATACACTCCTGGGACAAACAACAACAATTAAAGTCTTATTCCACTAAGTAA GGTCTGCTCTATGCATCACGCCATCACGCTACACCAATAAACGCTCCTACCACAATTGATTTTTTTTATCCCTCTCTTCT AATCTCAATACATCGTATATAAATTCATTATTTTTCTCTCTTTCTCACTCTAGAATTTGTCCCGTGTCTTTCCAATGTGC AAATATCTACAAATTATTTTCGGTTCAATAGTGCTATTTGATGGCCACCAGCTAATCATAGCATATTCCTTAGCTTTTTC CTCTTTCACACTCACACACAAAGCTTACCCTTTGCACAAGTTGGAGATCAGGCATTCTTCAATGGTTTTCAACTTCATGA ATAATCTCCTTCACCAGTCTCCAAGAGTAAATTATTCTCTTTTTGTATTGTTTTTTTGTTTCTTTTACACTGTGGCCGTG CTATTTTGATCTTTTTATATGCTAGATGCTCTCTTGCGAGTGTTTCATGTGAATTAATAACAAGACCTCACTGTTAGTTA ATGCAGACCATGCATTTGGGTTGGTTTCTCTAAACTCACTTTTTGCTTTTCCTTTTGTAGACCACTATAACGTTCTGAAT ATTCACCAAAGGCACGTACACTGCTTTCTCCCAACATAACTTTCACCAAACAACAAGTCAAAAGTCACTGCTTTCAACAG AGAATAATTGAGCATCTTTCTTTCACTTCCTTTTCGCCACTGACTTTTCTTGCCATTTTGATTGTCAAAACGTAAACCTC CATGTAATTAATTAGTGAACAGATAGAAAATTTTGCAAAAGTAGCTAAAGGGAAAACAGACATAAAAGGAGAAAACACTA ATGAACTTTTCTTTCCCTTTTAGCAACACTTAGCATGTCTGGTCAACTTAAACTCAAACATAACTAATCACAAGTTCACA ACCAACTTTTATATATTCCCAACCACAAAAAGACTAGAAAGTTTCATCTCAACTTTCAAACTGAGTGCATTTTTGAATAT CTTTCTATAATGGATTTAGATTTCCTGGAGAAGCTTATGTAAGTAGCTTCTGATTGTCTGAACTGATTCCGAAGTAACAG AAGCTAATGAAAACATGCTTTTGTGTTTGTGCAGGAAGAAGGGTGGGTTGTGTGCAGGGCATTCAAGAAAAAAACTACCA ACAGCCAAACAAAGACCATGGAAGGATGGGATTCAAGCTACTTCTATGATGAAGCAAGTGTGGTAAGCTCAGTGGTGGAT CCACTTGATCTCATCTCAAGGCAACCTCCTCAAAGATTTTTAGCTCAAAGTTTCATGTGCAAGCAAGAGATAGAAGCAGA AAACTTGAGACATCACATGAATCCAGAACAATTTATACAGCTTCCTCAGCTAGAAAGCCCATCAGTGCCATTAATGAAGA GGCCAAGCACAGTAGTGTCTCTTGTATCAGACAACAACAATGAAGATCATGATGATCAAAACAGGTTATTATTATCCAAC AAGAAAGTGACTGATTGGAGAGATCTTGACAAGTTTGTGGCTTCTCAACTGAGTCAAGAAACTGAAGGACTTCCAAGCTT TGAAAACCATGGTGGCTCAGACATGGCATTGTTTGAAGGAACCAAGCTAAGCCCGTTTCTAAGTACAAGCTCAGACTGTG ATATTGGGATATGCGTGTTTGAAAAATGAAGAAGTTAACAAATGCATGGAGTTGGAAACCACATTTTGTTTGTAGTACCA AATATTATAAATGTTCTATTATATGGATCAATGCTGAGACATAACTATATATATTTTTGTAAAAATATATATGTGTGTGG AAGAATTAAAATCTCTCTGGCCTTCTGCAGCTGAGTGATATGTGTGCAAATTGAGATGCATGCGTAAGATGGCTCTGGAA TCTAGATATAGAGTTTTATTTTTTATGTTATCATAAGCTGCAGGTTAGTGCTGTGTTGTCAAAAAATGAGTCGTCTAGGC TCGTGCCTGATTTGGGGAAGAGATGGCATGTAGCTGTGCCTGAAGACAGTGTGATCCTCCATTCCACACCATATTCTTCT TCTGTTATTCCAAAATGAATGCATGTATTCTTGGTTAGAACAAAAAACCTAGCTACCTCCTATCTATGTGCTCTTCTCTT TAAGCATGTTATAAATTTGTTCTGCATTAAACTTTCTTCACATCACGTGCCACGCAGAGGATGCACGAAATATGATCAGT TTTGATTTATTCACCTTATCATTTTCCTCTTTTATCACATTTCTACTCATTTTCTCTTCATGATTTTGAGGGCGACT
CDS sequence (LotjaGi2g1v0383000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGTCAATGGAGTCATGTGTCCCACCTGGTTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCT CAGAAAGAAAATAGCTTCTCAGAAGATTGACCTTGATGTTATCAGAGAGATAGATCTATACCGTATTGAACCATGGGATC TCATAGAGAGATGCAGGATTGGGTATGAAGAGCAGAGTGAATGGTATTTTTTCAGCCACAAGGACAAGAAGTATCCAACA GGGACAAGAACTAACAGAGCTACCATGGCTGGGTTCTGGAAGGCAACAGGAAGAGACAAGGCAGTGTATGACAAGATGAA ATTGATTGGAATGAGGAAGACACTTGTTTTCTACAAAGGAAGAGCACCTAATGGACAGAAAACTGACTGGATCATGCATG AGTACAGGCTTGAAACTGATGAAAATGGACCTCCACAGGAAGAAGGGTGGGTTGTGTGCAGGGCATTCAAGAAAAAAACT ACCAACAGCCAAACAAAGACCATGGAAGGATGGGATTCAAGCTACTTCTATGATGAAGCAAGTGTGGTAAGCTCAGTGGT GGATCCACTTGATCTCATCTCAAGGCAACCTCCTCAAAGATTTTTAGCTCAAAGTTTCATGTGCAAGCAAGAGATAGAAG CAGAAAACTTGAGACATCACATGAATCCAGAACAATTTATACAGCTTCCTCAGCTAGAAAGCCCATCAGTGCCATTAATG AAGAGGCCAAGCACAGTAGTGTCTCTTGTATCAGACAACAACAATGAAGATCATGATGATCAAAACAGGTTATTATTATC CAACAAGAAAGTGACTGATTGGAGAGATCTTGACAAGTTTGTGGCTTCTCAACTGAGTCAAGAAACTGAAGGACTTCCAA GCTTTGAAAACCATGGTGGCTCAGACATGGCATTGTTTGAAGGAACCAAGCTAAGCCCGTTTCTAAGTACAAGCTCAGAC TGTGATATTGGGATATGCGTGTTTGAAAAATGA
Protein sequence (LotjaGi2g1v0383000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLIERCRIGYEEQSEWYFFSHKDKKYPT GTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETDENGPPQEEGWVVCRAFKKKT TNSQTKTMEGWDSSYFYDEASVVSSVVDPLDLISRQPPQRFLAQSFMCKQEIEAENLRHHMNPEQFIQLPQLESPSVPLM KRPSTVVSLVSDNNNEDHDDQNRLLLSNKKVTDWRDLDKFVASQLSQETEGLPSFENHGGSDMALFEGTKLSPFLSTSSD CDIGICVFEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 5 | 158 | 154 | 3.53E-60 | ||
PANTHER | 7 | 307 | 301 | 2.4E-157 | – | |
PANTHER | 7 | 307 | 301 | 2.4E-157 | – | |
ProSiteProfiles | 9 | 158 | 150 | 59.261 | ||
Pfam | 10 | 137 | 128 | 1.7E-37 | ||
Gene3D | 18 | 164 | 147 | 4.6E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0383000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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