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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0386100 |
| Transcript ID | LotjaGi2g1v0386100.6 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G75500.1 Walls Are Thin 1; Swiss-Prot: sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1; TrEMBL-Plants: tr|I3SVL6|I3SVL6_LOTJA WAT1-related protein; Found in the gene: LotjaGi2g1v0386100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88200047..88202408) extracted from Lotus japonicus Gifu genome v1.2.
TTACAAGTAGGTAGAACTAAACAAGATTGCAATTATTATAGATCTCTTATCTTCCACTTCCAGACAGTTTTTGCCTCTTG CCCCTGGTCAACCAGTTCTAAACATTGATCTCCGAGTACCTGCTTCTCTTTTTGGCATTGAACCATCAGTATTCACTATT CAGTACCTGGGAACAAGAGAATATGGTAGCTGAACGAGCTAAGCTGCACTTAGCTTTAACGTTTTTGCAATTTTGTTATG CAGGAAACCACATATTTGTGAGGATTGCACTTGATTCAGGCGTCAGCAAGCTTGTATTTCCTGTCTATAGAAACATCACT GCTCTTCTTCTTCTGGGTCCCTTAGCTTATTTTTCAGAGAAGTATGCACTTCAGTTCTATACCATATATAAATGAATTCT GTCATGTTCCCAGTTTCAGCTATCTTACCTTTTTCTTTTTCTTTTTTGGATCTTATTGTTTGCCTCTTTGCAAGGAAAGA CAGGCCATCAATAACCAGATATTGTCTTGTCCAATTTTTCCTTCTAGGACTTGTTGGGTATGTATGATCTTTCCATGAAG CTACTCCACTGTATCAATTAATTGGCAATGTTTGTGTAACTTAAAAAGTATTAATTTTGATTCTTGCAGAATAACATTGA AAGAAGGGTTCTACCTTTTGGGTTTGGATAACACTTCACCTACCTTTGCTGCTGCTATGCAGAACTCTGTTCCAGCTCTG ACCTTTCTCATGGCTGTAGTACTCAGGCAAGCTATAAAGTTCTTACTTTAAATCCATGTTTCAAAGCTCTTCTATAATTG ATTCCAAAGCTAAAATTAATTCTGAGTATAAGTTTTTGTGAGTAGCTTACGAGTGTCAGAATTATTCTCGAAAAAAAAAA GTTGGTCCAGTAAGACGCTTACAAAGTATATGTAGAAATACTTATATGACATTGATCAATTATACGTGAAATGCAGATAT GAGAGTGTGCACTTCAATAGGATGGATGGTCTGGCTAAGGTTCTTGGAGTCCTTGCTTCTGTTGGAGGAGCTTCAATCAT TACCCTTTACAAGGGACCTACAATTTATACGCCAAATTTAGCACTGCATCAGGAGCAATTCTTGTCTGTACTCAGGGATG TCACAGCAAAAAACATGAACATGGGTGGCATTTATCTTTTTGGTCACTGCTTATGTTGGTCTGGTTGGATTGTGATGCAA GCATTTGTTCTGAAAAATTACTCAGCTCCACTCACAGTTTCTGCGTTTACTTGCTTCTTTGGTATTGTGCAGTTAATAAC AATTGCAGCCTTTTTCGAGAAGGATCCAAAAGCCTGGCAACTCAATTTTAGTGAAGAGATTTACAGCATTTTGTACTCGG TTTGTAAATCAAACTTAATTGGGTTAAAATTCACTAGCATCCTTCATTAGCATGTTGTTCACTTCATGTTACTATTTCTA CCTCTTTACTTAATTTGGTGATCCTAATTGGTTACCTTGACATCAATAAAACTTATTTCAACTATTAGGATCTATTATGT AACTAGTTTTATGTTACCAATTACATGTGAAACAAAGCATACCAAGTATTTGATAAAAAAAATAGGCTTGTTTGTATCAG GGTCTGGTGAATTCAGGGCTGGCAGCAGCATTACAGATATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTA TCTGCCCCTACAGACATTACTTGTTGCATTGATGGCATCCATTGTTTTTGGAGAAGATTTCTTCTTGGGAGGGTGGGTTG TTGTGATTCAAGCAACTTCATTTCTTATTGTTATCTTAAAACTTTTCTAATTGCAAAATATGCTTCCACCTACAGGGAGG TCTAAAGTCTAAACTAAAAGTTGGATTATCTGAGATTAGTTCATGCGTTATCCAAAATGCCTTTGGCTTATGGTATATAA ATCTTACTATTTTCAATTTTGAGGTGCAGGATTATTGGAGCTTTCTTAATTATAACCGGCTTATACCTTGTTGTGTGGGG AAGAAGTCAAGAAACCAAGTCTGCCAAGGAGTGCATGAGAGTCCCCATTATTGAGTCAGAGAAACATCCGGAAGAAAAAA GTTACACTGCTTCTCTCATGCAACAATTGATTCCTACACAAAATGTTTAGAAGATAGAGTTGACTAATTTGTATAATAGT AAAACTGTCAAAGTCCTTTAAGGTGACCAAATATTGCAACATTTTTTTGTTGCAGCAGGGTTATGATTTGTTTCACTAAT TCTTGCAACCCTCTACTTTTTTTTTTTATAAATTTGTAATTTATACATATTTCTTTGAGTAAAATACACTCACCCCCCTC AAGGTTTGTGAGAATAACACTTAACTTCATTCTTATTCAAAA
CDS sequence (LotjaGi2g1v0386100.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAACTCTGTTCCAGCTCTGACCTTTCTCATGGCTGTAGTACTCAGATATGAGAGTGTGCACTTCAATAGGATGGA TGGTCTGGCTAAGGTTCTTGGAGTCCTTGCTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTACAATTT ATACGCCAAATTTAGCACTGCATCAGGAGCAATTCTTGTCTGTACTCAGGGATGTCACAGCAAAAAACATGAACATGGGT GGCATTTATCTTTTTGGTCACTGCTTATGTTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAATTACTCAGC TCCACTCACAGTTTCTGCGTTTACTTGCTTCTTTGGTATTGTGCAGTTAATAACAATTGCAGCCTTTTTCGAGAAGGATC CAAAAGCCTGGCAACTCAATTTTAGTGAAGAGATTTACAGCATTTTGTACTCGGGTCTGGTGAATTCAGGGCTGGCAGCA GCATTACAGATATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTATCTGCCCCTACAGACATTACTTGTTGC ATTGATGGCATCCATTGTTTTTGGAGAAGATTTCTTCTTGGGAGGGATTATTGGAGCTTTCTTAATTATAACCGGCTTAT ACCTTGTTGTGTGGGGAAGAAGTCAAGAAACCAAGTCTGCCAAGGAGTGCATGAGAGTCCCCATTATTGAGTCAGAGAAA CATCCGGAAGAAAAAAGTTACACTGCTTCTCTCATGCAACAATTGATTCCTACACAAAATGTTTAG
Protein sequence (LotjaGi2g1v0386100.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQNSVPALTFLMAVVLRYESVHFNRMDGLAKVLGVLASVGGASIITLYKGPTIYTPNLALHQEQFLSVLRDVTAKNMNMG GIYLFGHCLCWSGWIVMQAFVLKNYSAPLTVSAFTCFFGIVQLITIAAFFEKDPKAWQLNFSEEIYSILYSGLVNSGLAA ALQIWTIGKGGPVLASIYLPLQTLLVALMASIVFGEDFFLGGIIGAFLIITGLYLVVWGRSQETKSAKECMRVPIIESEK HPEEKSYTASLMQQLIPTQNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 1.1E-141 | ||
| PANTHER | 1 | 240 | 240 | 1.1E-141 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 28 | 48 | 21 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 49 | 81 | 33 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Pfam | 79 | 217 | 139 | 1.7E-16 | ||
| Phobius | 82 | 102 | 21 | - | – | |
| Phobius | 103 | 108 | 6 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 109 | 130 | 22 | - | – | |
| SUPERFAMILY | 116 | 221 | 106 | 1.19E-8 | – | |
| Phobius | 131 | 144 | 14 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 145 | 166 | 22 | - | – | |
| Phobius | 167 | 172 | 6 | - | – | |
| TMHMM | 172 | 194 | 23 | - | – | |
| Phobius | 173 | 192 | 20 | - | – | |
| Phobius | 193 | 197 | 5 | - | – | |
| Phobius | 198 | 218 | 21 | - | – | |
| TMHMM | 199 | 218 | 20 | - | – | |
| Phobius | 219 | 261 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0386100.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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