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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0386100 |
| Transcript ID | LotjaGi2g1v0386100.9 |
| Related isoforms 11 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G75500.1 Walls Are Thin 1; Swiss-Prot: sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1; TrEMBL-Plants: tr|I3SVL6|I3SVL6_LOTJA WAT1-related protein; Found in the gene: LotjaGi2g1v0386100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88200279..88201469) extracted from Lotus japonicus Gifu genome v1.2.
TTATACGTGAAATGCAGATATGAGAGTGTGCACTTCAATAGGATGGATGGTCTGGCTAAGGTTCTTGGAGTCCTTGCTTC TGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTACAATTTATACGCCAAATTTAGCACTGCATCAGGAGCAAT TCTTGTCTGTACTCAGGGATGTCACAGCAAAAAACATGAACATGGGTGGCATTTATCTTTTTGGTCACTGCTTATGTTGG TCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAATTACTCAGCTCCACTCACAGTTTCTGCGTTTACTTGCTTCTT TGGTATTGTGCAGTTAATAACAATTGCAGCCTTTTTCGAGAAGGATCCAAAAGCCTGGCAACTCAATTTTAGTGAAGAGA TTTACAGCATTTTGTACTCGGTTTGTAAATCAAACTTAATTGGGTTAAAATTCACTAGCATCCTTCATTAGCATGTTGTT CACTTCATGTTACTATTTCTACCTCTTTACTTAATTTGGTGATCCTAATTGGTTACCTTGACATCAATAAAACTTATTTC AACTATTAGGATCTATTATGTAACTAGTTTTATGTTACCAATTACATGTGAAACAAAGCATACCAAGTATTTGATAAAAA AAATAGGCTTGTTTGTATCAGGGTCTGGTGAATTCAGGGCTGGCAGCAGCATTACAGATATGGACTATTGGCAAGGGAGG GCCAGTGCTTGCTTCAATTTATCTGCCCCTACAGACATTACTTGTTGCATTGATGGCATCCATTGTTTTTGGAGAAGATT TCTTCTTGGGAGGGTGGGTTGTTGTGATTCAAGCAACTTCATTTCTTATTGTTATCTTAAAACTTTTCTAATTGCAAAAT ATGCTTCCACCTACAGGGAGGTCTAAAGTCTAAACTAAAAGTTGGATTATCTGAGATTAGTTCATGCGTTATCCAAAATG CCTTTGGCTTATGGTATATAAATCTTACTATTTTCAATTTTGAGGTGCAGGATTATTGGAGCTTTCTTAATTATAACCGG CTTATACCTTGTTGTGTGGGGAAGAAGTCAAGAAACCAAGTCTGCCAAGGAGTGCATGAGAGTCCCCATTATTGAGTCAG AGAAACATCCGGAAGAAAAAAGTTACACTGCTTCTCTCATGCAACAATTGATTCCTACACAAAATGTTTAG
CDS sequence (LotjaGi2g1v0386100.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTCTGGCTAAGGTTCTTGGAGTCCTTGCTTCTGTTGGAGGAGCTTCAATCATTACCCTTTACAAGGGACCTAC AATTTATACGCCAAATTTAGCACTGCATCAGGAGCAATTCTTGTCTGTACTCAGGGATGTCACAGCAAAAAACATGAACA TGGGTGGCATTTATCTTTTTGGTCACTGCTTATGTTGGTCTGGTTGGATTGTGATGCAAGCATTTGTTCTGAAAAATTAC TCAGCTCCACTCACAGTTTCTGCGTTTACTTGCTTCTTTGGTATTGTGCAGTTAATAACAATTGCAGCCTTTTTCGAGAA GGATCCAAAAGCCTGGCAACTCAATTTTAGTGAAGAGATTTACAGCATTTTGTACTCGGGTCTGGTGAATTCAGGGCTGG CAGCAGCATTACAGATATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTATCTGCCCCTACAGACATTACTT GTTGCATTGATGGCATCCATTGTTTTTGGAGAAGATTTCTTCTTGGGAGGGATTATTGGAGCTTTCTTAATTATAACCGG CTTATACCTTGTTGTGTGGGGAAGAAGTCAAGAAACCAAGTCTGCCAAGGAGTGCATGAGAGTCCCCATTATTGAGTCAG AGAAACATCCGGAAGAAAAAAGTTACACTGCTTCTCTCATGCAACAATTGATTCCTACACAAAATGTTTAG
Protein sequence (LotjaGi2g1v0386100.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGLAKVLGVLASVGGASIITLYKGPTIYTPNLALHQEQFLSVLRDVTAKNMNMGGIYLFGHCLCWSGWIVMQAFVLKNY SAPLTVSAFTCFFGIVQLITIAAFFEKDPKAWQLNFSEEIYSILYSGLVNSGLAAALQIWTIGKGGPVLASIYLPLQTLL VALMASIVFGEDFFLGGIIGAFLIITGLYLVVWGRSQETKSAKECMRVPIIESEKHPEEKSYTASLMQQLIPTQNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 215 | 215 | 2.8E-123 | ||
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 215 | 215 | 2.8E-123 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 23 | 17 | - | – | |
| Phobius | 24 | 56 | 33 | - | – | |
| Pfam | 54 | 192 | 139 | 1.3E-16 | ||
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 57 | 77 | 21 | - | – | |
| Phobius | 78 | 83 | 6 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 84 | 105 | 22 | - | – | |
| SUPERFAMILY | 91 | 196 | 106 | 1.16E-8 | – | |
| Phobius | 106 | 119 | 14 | - | – | |
| Phobius | 120 | 141 | 22 | - | – | |
| TMHMM | 120 | 142 | 23 | - | – | |
| Phobius | 142 | 147 | 6 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 148 | 167 | 20 | - | – | |
| Phobius | 168 | 172 | 5 | - | – | |
| Phobius | 173 | 193 | 21 | - | – | |
| TMHMM | 174 | 193 | 20 | - | – | |
| Phobius | 194 | 236 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0386100.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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