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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0387600 |
| Transcript ID | LotjaGi2g1v0387600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant/F18B3-190 protein, putative; TAIR: AT3G50910.1 netrin receptor DCC; Swiss-Prot: sp|P89876|POLG_LMVE Genome polyprotein; TrEMBL-Plants: tr|G7KF01|G7KF01_MEDTR Plant/F18B3-190 protein, putative; Found in the gene: LotjaGi2g1v0387600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88384802..88389354) extracted from Lotus japonicus Gifu genome v1.2.
ATCAACTAGGGAAAGAGAGAATAAGGTCATGTTTATGTCACTGGCTCAGGTCCCCTACCCCAAAAAAGTCCCAAACAATT GCGGAGGAAGAAACTAGAAAAGTTGTTCCAGAAAGAGAGAGAAAATTCCACAAAACAAAAGAGCGAGAAGAGAAGCGGTC ATCGCAATAACCAAAGAAATAGTCGAAGTTGATTCTTCGGGAACAGGTTAGGTTTGTTTCTGTGTTACATTAAACAAACA GAGAGACGCGTGGTGTTGTTTGTTGACAGAACAGAACAGTCATCCAACGTTAACAGTCATCACATTTTGGACGCGCTATG CTTCCCGCCGCTCTTCTTCTTCCCGCTTAGACCTATCTATCCCTTTCCCTTTCTTCTCTACGTACGCACACGCAGGTACT TTCTCTCTCTCTTCTTTTCATATTTTGAATTTACCGCTTTCAAATTTTGAATTCTCTTTAGGTTTCACCTCCAATTCGTT TATTATTTGGTTGATTTTGCGTTTTAATCTCGCTTATATGTGATTTTCTTTACTTATGGTGGTGTTCTGGGTTTAATTTC CTCAATTTAGGTTATAATAGATTTCTCAAAAGTTTATTTGATGGCTTCATGATTTACAGATAATATGCCGACTTTTACTG CCATAGCATTGGATACCTTGTTAGAGCCTGGACCTTCCAAGCCCGTTTCACCTTCAATGCCTGTTCCGGAATTTCACAAG CTAGAGAGGACTACTAGTGCACCGAAAAGTAAGGCTCCTCGTCCGCGATTGAAGCCAGCACTTTATGCCACCCCTGAGGT GAAGCCGCTTCAAGATGCAACTTCTTCGTCGTTCCCTCCTTCGCCGTACATTGTCAACCACAAATGCCGGGGGCCGCGAT TGCTCAAGAGTTCTTCCGAGGCTAGTGTACTGTCCCATCAGAATGTTAATGGCGATCAAAAGGTTAATGATAAGGAGTTA GAAAATGTGGTGTCAAGTTCGGCTGGTGACCTTCAAGTCACTTTTACAAAACCTGAACTTGAAGACAAGCAGGTGAATGG TGTCTGTGGTGGTGAACTTGATAGAAGCAATGGACACAGAGAACCTGAAAACGGTAGCTTGACGGATGTTTTACTCAGGG AAAAGGCACTGGCATTGAATTCGGAAAGAGATAGAGAGATTGAAGACTTCTTTGACACACAAGATTCGTTGAGTTTCACA AGTAATACAGATGGAGAGGATAATGCAGGGACAGAACTGTCTATGAAATTCAGCAGTCCTGGAGGGGAGTTTTATGATGC TTGGGAAGGTAAAATGATTTGCTTTACTACCAATTATTTCTGTTCCAAATGCACATGGGCAAGCATAGGCTTGTTTATTC TTCTCACTTATAGAAATTTGTTGAGGCTTATGGGACTTACTGCAGTGTGGTTAAAGGAATATCCTGATTTTAATCTTATT GCATATTTCATGTACTGATCAAATAGAGGAGGAAGAGAGGATAGTTACTTCTATAATGAAGTTTCTCACAAATATTTCAT GTTGTAAATCAGCTTACATGACTCTTTTCTTTGTGTAGAACTATCTTCCAAAGGCACGCCTCAAAAATCTACTACATATG ATGTTGAAGCTGAATTGCGTGAAATGAGGTTGAGTCTATTGATGGAGATAGAGAAGCGGAAGCAAGCTGAAGAATCCCTG AATAACTTCAGAAACCAATGGGAGAGTGTTAGGCAAGGGTTATGTCAGGCAGGAATTATTTTGCCTTCAGATCTTAGTGT TGTTGCTGAAGGCGAGCAGCCTAATCATGACCCTGTGCAAGATCTTTGTCAACAGATTTATGTTGCTAGGTTCATATCAA ATATTGTCGGGAGAGGAACTGTCAGGGCTGAGGTAGAGAAGGAGATGGAAGCCCAACTTGAGTCCAAGAATTTTGAGATC ACTCGGCTCTTGGAACGACTCCGCTGTTATGAGACCATGAACCGGGAGATGTCTCAGAGAAACCAGGAGGCAGTAGGTAA GATATGCATCATATATTTAGTCTGTTGTTGTTTTGATTAAGTGGACTCATCAATTAATTTTTTCTGCTTTTAATTAGATA CATCTATTTACATCGTTATAATTTGGTTCGTCATTTTATTTTCCTCATAACACAATGATCCCACTGTGCATTTAGATTAA GATTATACATGCTCTAGAATCTGGATGGACGCAATGCAATTGTGCCTGTTGAGTGAATATCTTGTATCTGGGCAGTGAAT CTGTGAATGTGATATGGTTATTTTATTGACCGTTCAAACTTGTATGTCCAAGGGCAGGAAAGGTTTCTTTTTCTTGCTCT GATTTCCAATTTAGGGTACGAGTGTGATTTTGTAAAAATGAATGGTGTGTGATTGGTAGTTGAAAATTATCCCCTCCCCC CCCCCCCCCCCCATAAAAAAGGAAAGAGCTCATGATTTTCAATGATTGATGAGATAGTATGAGCTCATAGGTTGATCCTT GTATGGAGATGTATATATTTTCAGACATTAATCTTAATTTTTCAGTTCTTTCTGGATTTCTTACAATTGCAAGGTGTTCT CTGAGAGTATGGTGGATTGGTGGTGCTTGACTGTGTGGTTTCTTTATGAAAGTTCTTTATACTTTTGAAGTTTCTTTTAA GCTCTAACTTGTATTTTGTTTGCTTGAGTGCATTCTGGATGTTAGGTTTGTGGAATCTTACAAAATAAAGATAATTGTGT GTATGGAAGAACATATATGTAGGAGTGCTTACTTGCTAGATTGGCTTGAAGTTAATCAGCCTTGATTTGATGTGTTTTTT GGACGCATTATCTGTTATTGACGTACTGGTATTTGTTGCATTAAGTTGAGAAACCTCTGCTGATATAGTTAGGACACCTG CATTCATTAAAACTACTCTTATGCTAGTGGAGCTGGTGTCTAAGGACAGTGAAAATTTCTTAAGCTATGCCGTGGGCTGT TGTTTGTGACTTTTCTACTTAGTAGACAATATTCTATTTGCACAAAAACACAGAAGCATACTGCCCTATCCACATACATA GGGAAAGTTCGTCCTGATTTATTTAGCTTGCATAACTTGCCAATCTCATTTATGTTAATTTTCTGTGTTGTCCAGAGATG GCACGGCGGGAGAGGCAAAGAAAAAGTAGGAGACAAAGATGGATTTGGGGCTCCCTTACGACTGTGATTGCACTTAGTAC TGCAGCAATAGCATGGTCTTATCTCCCAACAGGTAACGGATCATCCTCTGCAGACGATCATCTGGTTCCCGAACATGAAG ATGCAGCTAAGTAGTTTACTCTATACCACTAACTGTAACTCAGTAGGAGAGGTCGAGAGGAAAATAAAAGTTCTACAGGC CACTTTGTGGTAAACTTCAATCTTGATCAGTTGCAATTTTCAGGCATTTAAGTGTTTGTTCATAATTTAGCTATTTAAAG AATCCGCGGCCTTCCACTTGAAATCTTGGTGAGTAGTTCAATGAGGTGTTTTGGTCCGCATTGTAGAGAAATATTCCGTT CCTACCTGTGCACATTTGTCCAAGCTGTGTCACTTGGAAATTTTGAGTACTTACATATATGTTTGTCCAATTTGATACAT TTGGCTCAGTGCACTTATAGTAGATTGTTTCATCAATTCGTGGATTACTCACTCTACAAAAGAGAAAGAGAGGATAGGGT AGGTTTCCTTTATCTGGAACATGTTTTGTTATAGGTTTTTGACCAACTAAACTATATCAGATTATTCCAGCCACACTTCA TGAGTGTAAGGTTGTGTTCTGGTAAAGGATTTTGACCGACCTATAATCAGTAACAGAGGTTTGATATAAATAATTGTTAT ACAACTAAATTGTTTGCTGACTAATTCCCTGGAAGCAGTTAAAGTTTGTTAATTTTTGTTTTGGCAAGTGTAAGTTAACA TCAATTTTTTAAGGAAGATTTACAAGTGTAGTATTCAAGAGTGAGACCACACAATTAAAAACATTGTTTATTTTTTAGCA GGTATTGCAATAGGTAAATTGGGTTTTTTTGTTTGTGAAAATGATGTGGGCTTTCTTAGGAGAATGAAAACATGGCTTAG AGTTAGGTTTGATATTGGCTCCTTCTTTGATCTTTGACAATGCTTTGTAATAGAGGTTTTGCCTAGGCTAAGGGCTTAAG GGAAAGGAGCGTTAGTGAGTGATGTGAGTCTTATAGTAGGGTTTAGAGTTTATTGATTGAGGGCACCGCATTGGAAGCAA GCAAAAAGTGAGGCGGTAGTTGGTGATTGTATTGATGCAGTTGCTGAGTTAGTTGTAAGAAGTGAAGGATTAATGATAGG TTGAGATGTTAGGTGAGCTATATTGATGGAACCAAAATGTTTGTGAGACATTACTGAACACATTTTTTCGACAAATTTGT ACTACAGTATCTAACAATGGCCTTACCATATCCAGAACAGACAAATATATATTTCTATTTTTGTTTTGAAGTTCTTGAGT TTTTGTGAAAAAGGGTATTCTTGAGTTCCTGGAAGGAGAGTGTGGTGTTAGATGGATCTGGTGATTGAATTGT
CDS sequence (LotjaGi2g1v0387600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGACTTTTACTGCCATAGCATTGGATACCTTGTTAGAGCCTGGACCTTCCAAGCCCGTTTCACCTTCAATGCCTGT TCCGGAATTTCACAAGCTAGAGAGGACTACTAGTGCACCGAAAAGTAAGGCTCCTCGTCCGCGATTGAAGCCAGCACTTT ATGCCACCCCTGAGGTGAAGCCGCTTCAAGATGCAACTTCTTCGTCGTTCCCTCCTTCGCCGTACATTGTCAACCACAAA TGCCGGGGGCCGCGATTGCTCAAGAGTTCTTCCGAGGCTAGTGTACTGTCCCATCAGAATGTTAATGGCGATCAAAAGGT TAATGATAAGGAGTTAGAAAATGTGGTGTCAAGTTCGGCTGGTGACCTTCAAGTCACTTTTACAAAACCTGAACTTGAAG ACAAGCAGGTGAATGGTGTCTGTGGTGGTGAACTTGATAGAAGCAATGGACACAGAGAACCTGAAAACGGTAGCTTGACG GATGTTTTACTCAGGGAAAAGGCACTGGCATTGAATTCGGAAAGAGATAGAGAGATTGAAGACTTCTTTGACACACAAGA TTCGTTGAGTTTCACAAGTAATACAGATGGAGAGGATAATGCAGGGACAGAACTGTCTATGAAATTCAGCAGTCCTGGAG GGGAGTTTTATGATGCTTGGGAAGAACTATCTTCCAAAGGCACGCCTCAAAAATCTACTACATATGATGTTGAAGCTGAA TTGCGTGAAATGAGGTTGAGTCTATTGATGGAGATAGAGAAGCGGAAGCAAGCTGAAGAATCCCTGAATAACTTCAGAAA CCAATGGGAGAGTGTTAGGCAAGGGTTATGTCAGGCAGGAATTATTTTGCCTTCAGATCTTAGTGTTGTTGCTGAAGGCG AGCAGCCTAATCATGACCCTGTGCAAGATCTTTGTCAACAGATTTATGTTGCTAGGTTCATATCAAATATTGTCGGGAGA GGAACTGTCAGGGCTGAGGTAGAGAAGGAGATGGAAGCCCAACTTGAGTCCAAGAATTTTGAGATCACTCGGCTCTTGGA ACGACTCCGCTGTTATGAGACCATGAACCGGGAGATGTCTCAGAGAAACCAGGAGGCAGTAGAGATGGCACGGCGGGAGA GGCAAAGAAAAAGTAGGAGACAAAGATGGATTTGGGGCTCCCTTACGACTGTGATTGCACTTAGTACTGCAGCAATAGCA TGGTCTTATCTCCCAACAGGTAACGGATCATCCTCTGCAGACGATCATCTGGTTCCCGAACATGAAGATGCAGCTAAGTA G
Protein sequence (LotjaGi2g1v0387600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTFTAIALDTLLEPGPSKPVSPSMPVPEFHKLERTTSAPKSKAPRPRLKPALYATPEVKPLQDATSSSFPPSPYIVNHK CRGPRLLKSSSEASVLSHQNVNGDQKVNDKELENVVSSSAGDLQVTFTKPELEDKQVNGVCGGELDRSNGHREPENGSLT DVLLREKALALNSERDREIEDFFDTQDSLSFTSNTDGEDNAGTELSMKFSSPGGEFYDAWEELSSKGTPQKSTTYDVEAE LREMRLSLLMEIEKRKQAEESLNNFRNQWESVRQGLCQAGIILPSDLSVVAEGEQPNHDPVQDLCQQIYVARFISNIVGR GTVRAEVEKEMEAQLESKNFEITRLLERLRCYETMNREMSQRNQEAVEMARRERQRKSRRQRWIWGSLTTVIALSTAAIA WSYLPTGNGSSSADDHLVPEHEDAAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 382 | 382 | - | – | |
| PANTHER | 1 | 425 | 425 | 3.4E-179 | – | |
| MobiDBLite | 9 | 49 | 41 | - | – | |
| Coils | 248 | 268 | 21 | - | – | |
| Coils | 328 | 348 | 21 | - | – | |
| Coils | 356 | 376 | 21 | - | – | |
| Phobius | 383 | 404 | 22 | - | – | |
| TMHMM | 383 | 405 | 23 | - | – | |
| Phobius | 405 | 426 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0387600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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