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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0389100 |
| Transcript ID | LotjaGi2g1v0389100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT2G18280.1 tubby like protein 2; Swiss-Prot: sp|Q8GVE5|TLP2_ARATH Tubby-like F-box protein 2; TrEMBL-Plants: tr|A0A1J7HDX1|A0A1J7HDX1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0389100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88509119..88512243) extracted from Lotus japonicus Gifu genome v1.2.
AAAGATTCGTTAATCCTAACTTATTAAATTCCCAAATTTAGGAAACTCAGTTGATCAAAGACTTATTAATCAAAATAACA AAAACAATAAGACACGTGTCAGAACGTAGGAGTTAGGGAACAGTGAGAACACCCACACTGGATTCCCTCCAATAATAATA AATAATCAAAATAAGAAGATTACTAAAATAAGATTTTCACATAAAAATAAATCAAACACACCAAACGCACGCTGGATCCG ATTCATGCCTCACCATTCCGGTCCCGGCGGTAACCTTTCTTGCGGTGGTGCCGGTGGCGGAGCTTCCATTGTCTCCTCCA TCTCGCCGCTCACCCATCCTGCAGCAACATTATTATTATTATTCACTAATCATTCTCTCACAAGCACTTGATCTTCTTCT GCTTCTCCTTCTCCGATTCGCTGGTTTGGTTTTGGTTTCCGTCGTTTATGGATCCGGGTTCTACACCCTCCCTTTCTCAT TGCTTCTTCCCTCTCTCACCGTTTTGCTTCACCTGATTCATCTTCTTCGCTTCAATTTTGCTTTTACAGGTTTTTATTCT TTTTTTTTATGCTTCATCATTCTACATTCTGGGTAATTTTCGTGATTTTTAGATCGCTGAGGCCATGGTATCTGCAACTA GTTGTAATCAAATTTTCCCAGTTATAAAGTTCTTAAATTTTTTATTTTAAATTTTTTGGTCAAGGAGAAGGTAAATTAGG TTAAGGGTTATTGCTTTGATTGTTGTGTTGTTGGTGGATTGTAAAATGTGTTAACATTTTTTACCCAATGGGTATGTAAA GATTTAGTTTTTGATGTTTAATGAATGTGGGTATATCTTGTCTGTAATTAATTGATTATGAATGTGAGCTAATGTAGTTT TGGTGAATTGGGTATGTTACGAATTATGATATGGTTTTTGATGCGTTGATTGAATCTAGAGTTACCTGTGTATAATTTGT TAGATTATGAAGCCTGTGTGTGTGTTCATGTTGGTATTAGAAAAGTTGGAAGAGTTTACATTGTTGTAATATGATTTTGG TTATGTTTTGATGGTTGCAGTTTTTGTGGTGTGAGGAAGACTGGTATGCCGTGTGAAAATGTCATTCAAAAGCATAGTGC GAGAACTCAAAGAGATGAGAGATGGGATTGGTAGCACGTCAAGGCGAGGAGGTTCAGGGAGCAGGCATTGGCATAGTCGG ACTAAGTCGCACATTGTTCCGGATGTTACTTTAGCTCCGCTTGAACATGTTCAGCAGGGACAGTGGGCAAACCTACCGTT TGATTTGCTTGTGGACATAATCCGGAGGGTTGAAGAGAGCGAGACGACTTGGCCTGCACGTGCCGTCGTTGTTTCTTGTG CTTCAGTCTGTAAATCATGGAGGGCAGTTACTAAAGAGATTGTCAAGACTCCTGAGCAATGTGGAAGGCTTACATTTCCT ATTTCATTGAAGCAGGTGATAAACTCTCCACCATTTTTCTTTTGGTGCTTCTTTTCCCTTCAGGTTTTTTTGTTTCTCAT GCTTTTTTTCCTTTGTGTATGTGAATAGCCGGGTCCTCGTGATTCTCCGTTTCAGTGCTTTATCAGGAGGAACAGAGAGA CTTCAACATATTTATTGTACTTTGGACTGGTGCCATGTAAGTTTGTTTCAATGCTGGAGATGAGATTCTTGAGATATTAT ACTGTTGTCATTTACACCCAGTGATCATCGTAATTATGTTATGAAATCTGTTCTTAAATGGATTACTTGGTATTCATAAA TATTATTATAGTCATAAATAGGCGAGCAGAACGAAGTTTGTTTAACTGCTGAATGAGCTCTTGAAAGTATATTTGAGAAG TTTGTTGTGTTATGAATTTACTTATACAGCGGAGAATGAGACTGATAAGCTGTTATTAGCTGCTAAAAAGATTAGAAGGG CAACAGGGACAGACTTTATCATATCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAACACATATATTGGGAAACTCAGG CAAGTTTTGTTTGATAGCAATTTTACTTGCCTTCTTTTCAATTTCTAACCTTGCCCTTTCCCTGTTTGCAACTTGATGAC AAACTTCGACAGGTCAAACTTTTTGGGAACCAAGTTCACTGTATATGACAGCCAACCTCCACATGGAGCTGGAATGCAAC TAAATAGTCGGTCTAGTCGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCGGCTGGTAACTATGTTGTTAGCACC ATTGCCTATGAGCTGAACGTTCTCCGGACAAGAGGGCCAAGAAGAATGCAGTGCACCATGAACTCCATTCCTATCTCAGC TATCCAGGAAGGGGGCAGTGCGCCAACTCCTACATCATTTCCTCAAATCATTGATAAGCATTTTTCTCCCTCACCAGCGG CAAAAGGAAAAGGTCTAATTAGTGATTTAAACCACGCAACCCTCTCGGAGGTGCCGGTACAGAGTGAAGGCTCACTTGAG GGTCTGGTGCTGAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAGTGCTGGTGCTTGAACTTTAAGGGTCGTGTTAC AGTGGCTTCTGTTAAGAATTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTCCTGCGGAGCAAGAAAAGG TAATCTTGCAGTTTGGAAAGATTGGGAAAGACATATTTACCATGGATTACCGCTATCCACTCTCTGCGTTCCAAGCCTTT GCCTTATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGAGACCAATCTATGTCACTTGATCATCATCTGCTGGT TTGTTTCATGTTATATATAATATGCTAGGCGCAGTTTGTCAGAATGGTGAGATGAAGCTCACACATTTTAGCTATGCAGC CATTAGTATTTTCCTGTTATGTTAGTTGTTGATTCTGGAAATTAACTTGTATTTTGTTTCATAGCCCTGCAACTAAATTA AGTTTAGTGAATTTTTCACCCTTATAATATATTGTCGCATGGCCCTCACTTATGAATCTCCTTTTTTTTTCCACCTAGTG AATTTTTAGTTGTAGATATCCCTTTCTGTTTATGATGTTTGGTGCATTACTCTTTCAACCTGTATTTCTCGTTAGTCACT AATCA
CDS sequence (LotjaGi2g1v0389100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTCAAAAGCATAGTGCGAGAACTCAAAGAGATGAGAGATGGGATTGGTAGCACGTCAAGGCGAGGAGGTTCAGG GAGCAGGCATTGGCATAGTCGGACTAAGTCGCACATTGTTCCGGATGTTACTTTAGCTCCGCTTGAACATGTTCAGCAGG GACAGTGGGCAAACCTACCGTTTGATTTGCTTGTGGACATAATCCGGAGGGTTGAAGAGAGCGAGACGACTTGGCCTGCA CGTGCCGTCGTTGTTTCTTGTGCTTCAGTCTGTAAATCATGGAGGGCAGTTACTAAAGAGATTGTCAAGACTCCTGAGCA ATGTGGAAGGCTTACATTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCGTTTCAGTGCTTTATCAGGAGGA ACAGAGAGACTTCAACATATTTATTGTACTTTGGACTGGTGCCATCGGAGAATGAGACTGATAAGCTGTTATTAGCTGCT AAAAAGATTAGAAGGGCAACAGGGACAGACTTTATCATATCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAACACATA TATTGGGAAACTCAGGTCAAACTTTTTGGGAACCAAGTTCACTGTATATGACAGCCAACCTCCACATGGAGCTGGAATGC AACTAAATAGTCGGTCTAGTCGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCGGCTGGTAACTATGTTGTTAGC ACCATTGCCTATGAGCTGAACGTTCTCCGGACAAGAGGGCCAAGAAGAATGCAGTGCACCATGAACTCCATTCCTATCTC AGCTATCCAGGAAGGGGGCAGTGCGCCAACTCCTACATCATTTCCTCAAATCATTGATAAGCATTTTTCTCCCTCACCAG CGGCAAAAGGAAAAGGTCTAATTAGTGATTTAAACCACGCAACCCTCTCGGAGGTGCCGGTACAGAGTGAAGGCTCACTT GAGGGTCTGGTGCTGAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAGTGCTGGTGCTTGAACTTTAAGGGTCGTGT TACAGTGGCTTCTGTTAAGAATTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTCCTGCGGAGCAAGAAA AGGTAATCTTGCAGTTTGGAAAGATTGGGAAAGACATATTTACCATGGATTACCGCTATCCACTCTCTGCGTTCCAAGCC TTTGCCTTATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA
Protein sequence (LotjaGi2g1v0389100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFKSIVRELKEMRDGIGSTSRRGGSGSRHWHSRTKSHIVPDVTLAPLEHVQQGQWANLPFDLLVDIIRRVEESETTWPA RAVVVSCASVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPFQCFIRRNRETSTYLLYFGLVPSENETDKLLLAA KKIRRATGTDFIISLVADDFSRSSNTYIGKLRSNFLGTKFTVYDSQPPHGAGMQLNSRSSRRFHSKQVSPRVPAGNYVVS TIAYELNVLRTRGPRRMQCTMNSIPISAIQEGGSAPTPTSFPQIIDKHFSPSPAAKGKGLISDLNHATLSEVPVQSEGSL EGLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQA FALCLSSFDTKPACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 415 | 415 | 1.5E-229 | – | |
| PANTHER | 1 | 415 | 415 | 1.5E-229 | – | |
| MobiDBLite | 14 | 34 | 21 | - | – | |
| SUPERFAMILY | 51 | 99 | 49 | 7.59E-6 | ||
| Pfam | 56 | 108 | 53 | 9.5E-8 | ||
| SUPERFAMILY | 105 | 415 | 311 | 2.28E-94 | ||
| Gene3D | 114 | 415 | 302 | 6.2E-95 | ||
| Pfam | 119 | 410 | 292 | 7.5E-91 | ||
| PRINTS | 171 | 187 | 17 | 4.4E-74 | ||
| PRINTS | 187 | 211 | 25 | 4.4E-74 | ||
| PRINTS | 236 | 263 | 28 | 4.4E-74 | ||
| PRINTS | 325 | 342 | 18 | 4.4E-74 | ||
| ProSitePatterns | 343 | 356 | 14 | - | ||
| PRINTS | 343 | 359 | 17 | 4.4E-74 | ||
| PRINTS | 372 | 391 | 20 | 4.4E-74 | ||
| PRINTS | 393 | 415 | 23 | 4.4E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0389100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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