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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0389100 |
| Transcript ID | LotjaGi2g1v0389100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT2G18280.1 tubby like protein 2; Swiss-Prot: sp|Q8GVE5|TLP2_ARATH Tubby-like F-box protein 2; TrEMBL-Plants: tr|A0A1J7HDX1|A0A1J7HDX1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0389100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88510217..88511883) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCATTCAAAAGCATAGTGCGAGAACTCAAAGAGATGAGAGATGGGATTGGTAGCACGTCAAGGCGAGGAGGTTCAGG GAGCAGGCATTGGCATAGTCGGACTAAGTCGCACATTGTTCCGGATGTTACTTTAGCTCCGCTTGAACATGTTCAGCAGG GACAGTGGGCAAACCTACCGTTTGATTTGCTTGTGGACATAATCCGGAGGGTTGAAGAGAGCGAGACGACTTGGCCTGCA CGTGCCGTCGTTGTTTCTTGTGCTTCAGTCTGTAAATCATGGAGGGCAGTTACTAAAGAGATTGTCAAGACTCCTGAGCA ATGTGGAAGGCTTACATTTCCTATTTCATTGAAGCAGGTGATAAACTCTCCACCATTTTTCTTTTGGTGCTTCTTTTCCC TTCAGGTTTTTTTGTTTCTCATGCTTTTTTTCCTTTGTGTATGTGAATAGCCGGGTCCTCGTGATTCTCCGTTTCAGTGC TTTATCAGGAGGAACAGAGAGACTTCAACATATTTATTGTACTTTGGACTGGTGCCATGTAAGTTTGTTTCAATGCTGGA GATGAGATTCTTGAGATATTATACTGTTGTCATTTACACCCAGTGATCATCGTAATTATGTTATGAAATCTGTTCTTAAA TGGATTACTTGGTATTCATAAATATTATTATAGTCATAAATAGGCGAGCAGAACGAAGTTTGTTTAACTGCTGAATGAGC TCTTGAAAGTATATTTGAGAAGTTTGTTGTGTTATGAATTTACTTATACAGCGGAGAATGAGACTGATAAGCTGTTATTA GCTGCTAAAAAGATTAGAAGGGCAACAGGGACAGACTTTATCATATCTTTGGTTGCAGATGATTTTTCTCGGTCCAGCAA CACATATATTGGGAAACTCAGGCAAGTTTTGTTTGATAGCAATTTTACTTGCCTTCTTTTCAATTTCTAACCTTGCCCTT TCCCTGTTTGCAACTTGATGACAAACTTCGACAGGTCAAACTTTTTGGGAACCAAGTTCACTGTATATGACAGCCAACCT CCACATGGAGCTGGAATGCAACTAAATAGTCGGTCTAGTCGGAGATTTCATTCTAAGCAGGTGTCTCCAAGAGTTCCGGC TGGTAACTATGTTGTTAGCACCATTGCCTATGAGCTGAACGTTCTCCGGACAAGAGGGCCAAGAAGAATGCAGTGCACCA TGAACTCCATTCCTATCTCAGCTATCCAGGAAGGGGGCAGTGCGCCAACTCCTACATCATTTCCTCAAATCATTGATAAG CATTTTTCTCCCTCACCAGCGGCAAAAGGAAAAGGTCTAATTAGTGATTTAAACCACGCAACCCTCTCGGAGGTGCCGGT ACAGAGTGAAGGCTCACTTGAGGGTCTGGTGCTGAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAGTGCTGGTGCT TGAACTTTAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAATTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTT TCTCCTGCGGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGGAAAGACATATTTACCATGGATTACCGCTATCC ACTCTCTGCGTTCCAAGCCTTTGCCTTATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA
CDS sequence (LotjaGi2g1v0389100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTCAAAAGCATAGTGCGAGAACTCAAAGAGATGAGAGATGGGATTGGTAGCACGTCAAGGCGAGGAGGTTCAGG GAGCAGGCATTGGCATAGTCGGACTAAGTCGCACATTGTTCCGGATGTTACTTTAGCTCCGCTTGAACATGTTCAGCAGG GACAGTGGGCAAACCTACCGTTTGATTTGCTTGTGGACATAATCCGGAGGGTTGAAGAGAGCGAGACGACTTGGCCTGCA CGTGCCGTCGTTGTTTCTTGTGCTTCAGTCTGTAAATCATGGAGGGCAGTTACTAAAGAGATTGTCAAGACTCCTGAGCA ATGTGGAAGGCTTACATTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGATTCTCCGTTTCAGTGCTTTATCAGGAGGA ACAGAGAGACTTCAACATATTTATTGTACTTTGGACTGGTGCCATCGGAGAATGAGACTGATAAGCTGTTATTAGCTGCT AAAAAGATTAGAAGGGCAACAGGGACAGACTTTATCATATCTTTGGTTGCAGATGATTTTTCTCGGTCAAACTTTTTGGG AACCAAGTTCACTGTATATGACAGCCAACCTCCACATGGAGCTGGAATGCAACTAAATAGTCGGTCTAGTCGGAGATTTC ATTCTAAGCAGGTGTCTCCAAGAGTTCCGGCTGGTAACTATGTTGTTAGCACCATTGCCTATGAGCTGAACGTTCTCCGG ACAAGAGGGCCAAGAAGAATGCAGTGCACCATGAACTCCATTCCTATCTCAGCTATCCAGGAAGGGGGCAGTGCGCCAAC TCCTACATCATTTCCTCAAATCATTGATAAGCATTTTTCTCCCTCACCAGCGGCAAAAGGAAAAGGTCTAATTAGTGATT TAAACCACGCAACCCTCTCGGAGGTGCCGGTACAGAGTGAAGGCTCACTTGAGGGTCTGGTGCTGAAAAACAAGGCTCCC AGATGGCATGAGCAGCTGCAGTGCTGGTGCTTGAACTTTAAGGGTCGTGTTACAGTGGCTTCTGTTAAGAATTTTCAACT TGTGGCTGCTGTTGATCCATCTCATAATGTTTCTCCTGCGGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGGA AAGACATATTTACCATGGATTACCGCTATCCACTCTCTGCGTTCCAAGCCTTTGCCTTATGCTTGAGCAGCTTTGATACA AAACCAGCCTGTGAATGA
Protein sequence (LotjaGi2g1v0389100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFKSIVRELKEMRDGIGSTSRRGGSGSRHWHSRTKSHIVPDVTLAPLEHVQQGQWANLPFDLLVDIIRRVEESETTWPA RAVVVSCASVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPFQCFIRRNRETSTYLLYFGLVPSENETDKLLLAA KKIRRATGTDFIISLVADDFSRSNFLGTKFTVYDSQPPHGAGMQLNSRSSRRFHSKQVSPRVPAGNYVVSTIAYELNVLR TRGPRRMQCTMNSIPISAIQEGGSAPTPTSFPQIIDKHFSPSPAAKGKGLISDLNHATLSEVPVQSEGSLEGLVLKNKAP RWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFALCLSSFDT KPACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 405 | 405 | 5.6E-218 | – | |
| PANTHER | 1 | 405 | 405 | 5.6E-218 | – | |
| MobiDBLite | 14 | 34 | 21 | - | – | |
| SUPERFAMILY | 51 | 99 | 49 | 7.72E-6 | ||
| Pfam | 56 | 108 | 53 | 9.1E-8 | ||
| SUPERFAMILY | 105 | 405 | 301 | 5.49E-87 | ||
| Gene3D | 114 | 405 | 292 | 1.6E-84 | ||
| Pfam | 119 | 400 | 282 | 9.2E-80 | ||
| PRINTS | 177 | 201 | 25 | 2.0E-61 | ||
| PRINTS | 226 | 253 | 28 | 2.0E-61 | ||
| PRINTS | 315 | 332 | 18 | 2.0E-61 | ||
| PRINTS | 333 | 349 | 17 | 2.0E-61 | ||
| ProSitePatterns | 333 | 346 | 14 | - | ||
| PRINTS | 362 | 381 | 20 | 2.0E-61 | ||
| PRINTS | 383 | 405 | 23 | 2.0E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0389100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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