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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0389500 |
| Transcript ID | LotjaGi2g1v0389500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant (LEA) protein; TAIR: AT4G36600.2 Late embryogenesis abundant (LEA) protein; Swiss-Prot: sp|Q8SVY9|Y3G1_ENCCU Uncharacterized protein ECU03_1610; TrEMBL-Plants: tr|C6T960|C6T960_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0389500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88544140..88547236) extracted from Lotus japonicus Gifu genome v1.2.
ATTAATAAACCGCCAATGAAAAGAAAATAATCTTTTTTTCGTACATTACAGACGAAGAGAAAATAGATAGTGAAACGAAA TGGGAAACAGAAAGGTTTTGTTGTTGTTTGTGATATTGTTTGCAGTGTGTGTGGGGATTTGCAGGTGTTGGGGTGAAGAT GCCAAAGCCAAAGCGGAAGAAGCTGTCAATGATGCTCGTAACACCTTCTCCGAGTAATCTTCTTTCTCTCTGTATCCTTT TTCACCATCTCACATTCTCACTAGATTTTAGTCATGCAAATATGCTATGCAAGAAAACATGTGTTTTCTTTTTTATGTTT ATTTATCATTGCTTAATTGTGATGGGCAATTATTTATTTTTATTTTGCTAAGCCGTAGTGCATGTGTGTTTTTTTATTCT GGATTAGACAATATTTTTCCTTTTCCAAAATCACATTGTACGAGTTTTGTTGAAGCACATTACGACGAGATATTCGAGTA TTGTTAAGGAATCAATGGCTAACCTTATCTTGTTATCCCAATCTGAAAAGGGACTGTTTCCCTTAATACATTTGGGAAAT CAAACTAATGATGGATAGTTAGTTCTGATAATCATAATTAGGAGGTGGGGAACGAAAACGCGGGAGGGGTTTGGATCCTC TCCATCCATGTTCCCTCCATCCTCTCTTCATCCAAATCTGAGCCATTGATTTTGAAATTTAAAGGCTTGGATCAATTTAA GAAGAGAGAGAAAAATTGAATTGTATTTAAAGGCTTGGATCAATTTAAGAAGAGAGAGAAAACATGAATTAATCCTCATC TTTAAAATTTAAAATGGATGGCTCAGATTTTGGATGGAGAGGGGATGGAGAGAAGTTGGATGGAGAGGATCCAAATCCGA AAAAACGGGTTTGGATTCTCTCCATCCATGTTCCCTCCATCCTCTCTCCATCCAAATCTGAGCCATTGATTTTGAAATTT AAAGGCTTGGATCAATTTAAGAAGAGAGAAAAAAAAATGAATTATATTTAAAGGCTTGGATCAATTTAAGAAGAGAGAGA GGGGCTTGGAGTGTAGGAGATTGATGCAAACAATAGCGTGGATTGATGCCTCATGCCTCTATATCAGAAATATAATATAT AAAAAAATTCATCTCTCTAGGCAAAACATTGTTTATAATATGGTATTGGAACCAAAATCTATATGGTTAAATGGTTATTG CTCCCATTATTCTAATCCTCATTGCTCTAGTTGTTCTAATAAAAAAGATTAAATTTCATCTCATATTTAAATTGCAACAT ACACTTTAAGTATTTTCACCCCGCCACAACTTAGTATGTGTTTGTTTATCTGTTGGATTGGATTTGATGTGAATGTGCTT TAGACTTGAAAACAAACACACTCTTGGTGTGTTTTTGTATTTCTGTCAGTGCAATGTGCTTTTGTGCTCCTTTTGCAATC CATGTCTCTTGTATCATTGCATTAATGTGTTCTTGGCCAACTTGACGCAAATACATACCCACATTTAAGATTTTAGGATA GGATCTGCTTTCTCTCATGCTTGACCAGTATATGTTTTGTCTGTCTTTGAATAAATTATTGCTAGTTCTAGTGCATTTGT AGGCCAAACCTTAAATTTTGTCATATTGTTCATTTGTTTACAATTATTGTGCCAGAGGTTTGGGGTCCCAAAATGATAAT GTAAGACAAGCCACTCAAAACGCGAAGTACAAAGCTGAAGATGCTGCCTCAAGGGCAACAGAGACAATGAAGTCTGCAGC ATCAGGTATTTCATATTTGTTCATTATTTGTCAATCTTTACATCTGGATTTTAAATTGGTATATCGACTTCAAGCAATGT AATCTTAATCAAAATTCCTTTTATATTTGCTTGTCCAGGAGCTTCAGATTATGCTTCTCAAAAAGCTACTGACGCTCGGG AAGCAGTTTCAGAAGCCGTATCATATGGAAGGGAAAAAGCCTCCAAGGCTTATGATGATTCTGATGAGGTCATCAGAATG CCAACAGACAAGAATAAGATCAATGATGCAAAAGACATGGTGGGAGACACCTATGAGGATGCTAAACAAAAAATGTACAT GGCTTCAGATAAAGCTTCAACCATGGCTCGCAACGCCAAAGACAACATGGCAGAGAAAGCATCCAATGTCTATGAGCAGG GGAAGGAGAAAATAAACACGGCTTCAGATATGGCTTCGGAGAAATTCCACGATGCTAATGATTGCGCTCAGGGGAGGATG AAGAGCGCTCCGCCAAAAATTCAAAGCGTGAAAAGCAAAGGGAAAAGAATAGTGGATTATGGAAGAGATAAGGCCTTTGC TGCTTATGATGAAACCAAGGAGCGGGTGAATGATGCAAAAGATAAGATGGGTGAGGCAATGGGATTAGATAGAGACAAAA TTGCAGAAACTTTTGAGCAAGCTAAAGATGAAGTGGGTGAGAGATACATGTCTGCAAAGAATACAATGAGTGAAGAGGCC AAGGCTAGGTATGAGGCTGCAAAGGAGAAGGCTTCTGAAGCCACAGGAGAATTTGGAGAAATGTTGAGGAACACCCCAGA ACTAGAACTATAAGGATATATGGTCAGTATCTTTCACTTGTTAGCTGAAACAACCTCACTAGTTCACTTTAGTTAGATTT TAGCTCTTTGGCTCTTTTGCAAACCGTTAGCGTGTTTGGATTAACTTCTCTTTTATCTGGATCAATTCTGACTCAGATGA TAATTTTGTAAGCTTCTGGTCAGTTTTAGATTCTGAATCAATTGTAGAAGGATTTTCAAACATGTATGCCGTGTTTTGTT GCATTTCCTTTTTTGTACAAAAGCTGGTAAGGTTCCAAGGTTTGTTATATATCTAGATGCTAGGTAGATTCATATAAGCT GATATCCCGTTTTGTTTTTGGGGTTTTTTGTAACCTACCACACCCTATGTATCTTATGTAACCTATAATTAATTATGATA CTTTTGCTGCTAGTGTATGCTGACATAGTGACATCTGATATAAAATGTTGGGGCCCTTTCCTAACATGCGTAGTTTGTTA TCTTTGTTATAAGAATAGCGTATTAGCATCTAAAGGTTGCATGGTTTAATAAAGGCA
CDS sequence (LotjaGi2g1v0389500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACAGAAAGGTTTTGTTGTTGTTTGTGATATTGTTTGCAGTGTGTGTGGGGATTTGCAGGTGTTGGGGTGAAGA TGCCAAAGCCAAAGCGGAAGAAGCTGTCAATGATGCTCGTAACACCTTCTCCGAAGGTTTGGGGTCCCAAAATGATAATG TAAGACAAGCCACTCAAAACGCGAAGTACAAAGCTGAAGATGCTGCCTCAAGGGCAACAGAGACAATGAAGTCTGCAGCA TCAGGAGCTTCAGATTATGCTTCTCAAAAAGCTACTGACGCTCGGGAAGCAGTTTCAGAAGCCGTATCATATGGAAGGGA AAAAGCCTCCAAGGCTTATGATGATTCTGATGAGGTCATCAGAATGCCAACAGACAAGAATAAGATCAATGATGCAAAAG ACATGGTGGGAGACACCTATGAGGATGCTAAACAAAAAATGTACATGGCTTCAGATAAAGCTTCAACCATGGCTCGCAAC GCCAAAGACAACATGGCAGAGAAAGCATCCAATGTCTATGAGCAGGGGAAGGAGAAAATAAACACGGCTTCAGATATGGC TTCGGAGAAATTCCACGATGCTAATGATTGCGCTCAGGGGAGGATGAAGAGCGCTCCGCCAAAAATTCAAAGCGTGAAAA GCAAAGGGAAAAGAATAGTGGATTATGGAAGAGATAAGGCCTTTGCTGCTTATGATGAAACCAAGGAGCGGGTGAATGAT GCAAAAGATAAGATGGGTGAGGCAATGGGATTAGATAGAGACAAAATTGCAGAAACTTTTGAGCAAGCTAAAGATGAAGT GGGTGAGAGATACATGTCTGCAAAGAATACAATGAGTGAAGAGGCCAAGGCTAGGTATGAGGCTGCAAAGGAGAAGGCTT CTGAAGCCACAGGAGAATTTGGAGAAATGTTGAGGAACACCCCAGAACTAGAACTATAA
Protein sequence (LotjaGi2g1v0389500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNRKVLLLFVILFAVCVGICRCWGEDAKAKAEEAVNDARNTFSEGLGSQNDNVRQATQNAKYKAEDAASRATETMKSAA SGASDYASQKATDAREAVSEAVSYGREKASKAYDDSDEVIRMPTDKNKINDAKDMVGDTYEDAKQKMYMASDKASTMARN AKDNMAEKASNVYEQGKEKINTASDMASEKFHDANDCAQGRMKSAPPKIQSVKSKGKRIVDYGRDKAFAAYDETKERVND AKDKMGEAMGLDRDKIAETFEQAKDEVGERYMSAKNTMSEEAKARYEAAKEKASEATGEFGEMLRNTPELEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Gene3D | 25 | 196 | 172 | 1.9E-5 | – | |
| Phobius | 26 | 312 | 287 | - | – | |
| PANTHER | 26 | 249 | 224 | 4.3E-32 | – | |
| PANTHER | 26 | 249 | 224 | 4.3E-32 | – | |
| MobiDBLite | 43 | 69 | 27 | - | – | |
| MobiDBLite | 43 | 60 | 18 | - | – | |
| PANTHER | 223 | 301 | 79 | 4.3E-32 | – | |
| PANTHER | 223 | 301 | 79 | 4.3E-32 | – | |
| Coils | 224 | 244 | 21 | - | – | |
| Coils | 272 | 299 | 28 | - | – | |
| MobiDBLite | 283 | 312 | 30 | - | – | |
| MobiDBLite | 283 | 298 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0389500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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